View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_low_10 (Length: 357)
Name: NF5017_low_10
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 24 - 342
Target Start/End: Original strand, 14618268 - 14618593
Alignment:
| Q |
24 |
agtttcatttcaatctaccaggtacttctctctgctatttctaattcattcaatgttattttgatttatattttcccaccatggttgttttggacttttg |
123 |
Q |
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| T |
14618268 |
agtttcatttcaatctaccaggtacttctctctgctatttctaattcattcaatgttattttgatttatattttcccaccatggttgttttggacttttg |
14618367 |
T |
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| Q |
124 |
tgatcattgattaagttttgttgtgattaagttttcccaccatttagagatgactactagaaaaccacataggtaaaattgttaattgtagtgttttctt |
223 |
Q |
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| T |
14618368 |
tgatcattgattaagttttgttgtgattaagttttcccaccatttagagatttctactggaaaaccacataggtaaaattgttaattgtaatgttttctt |
14618467 |
T |
|
| Q |
224 |
aaactggtcatgtaaaatttgtattatgaatg-ttgacc------tgtttgtatgaatgatctagattctctttggttcttcaacctcttgatgaataaa |
316 |
Q |
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|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||| |
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| T |
14618468 |
aaactggtcatgtaaaatttgtattatgaatgattgacctgtttgtgtttgtatgaatgatctatattctctatggttcttcaacctctt-atgaataaa |
14618566 |
T |
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| Q |
317 |
-ttaactttgttttcatttggtttatt |
342 |
Q |
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|||||||||||||||||||||||||| |
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| T |
14618567 |
gttaactttgttttcatttggtttatt |
14618593 |
T |
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