View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_low_14 (Length: 297)
Name: NF5017_low_14
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 279
Target Start/End: Original strand, 5032856 - 5033129
Alignment:
| Q |
13 |
aaaatgggagagtctgttttgttttgttatcttcgaatctatccttttttgtgaaaccaaaatgtaccattttttaaccttatgtcctattctgttatac |
112 |
Q |
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| T |
5032856 |
aaaatggaagagtctgttttgttttgttatcttcgaatctatccttttttgtgaaaccaaaatgtaccattttttaaccttatgtcctattctgttatac |
5032955 |
T |
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| Q |
113 |
ttttattatatgccaaaaactcatattctcttttgttttgttctaacctttctgctaaattataactaagttaaggtatgcttcattattcaatcaaaga |
212 |
Q |
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| T |
5032956 |
ttttattatatgccaaaa-ctcatattctcttttgttttgttctaacctttctgctaaattataactaagttaaggtatgcttcattattcaatcacaga |
5033054 |
T |
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| Q |
213 |
acatatataaaaggcatcaccgctataaa--------gtatgagtgaacaaaaagtcattgcaatcagaacctga |
279 |
Q |
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| T |
5033055 |
acatatataaaaggcatcaccgctataaagtatgactgtatgagtgaacaaaaagtcattgcaatcagaacctga |
5033129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 20 - 279
Target Start/End: Original strand, 5038673 - 5038930
Alignment:
| Q |
20 |
gagagtctgttttgttttgttatcttcgaatctatccttttttgtgaaaccaaaatgtaccattttttaaccttatgtcctattctgttatacttttatt |
119 |
Q |
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| T |
5038673 |
gagagtctgttttgttttgttatcttcgactctatccttttttgtgaaaccaaaatgcaccatattttaaccttatgtcctattctgttatacttttatt |
5038772 |
T |
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| Q |
120 |
atatgccaaaaactcatattctcttttgttttgttctaacctttctgctaaattataactaagttaaggtatgcttcattattcaatcaaagaacatata |
219 |
Q |
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| T |
5038773 |
atatgcc-aaaactcatattctcttttgttttgttcaaacaattctgctaaatggtacct-atataagttatgcttcattattcaatcacagaacatata |
5038870 |
T |
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| Q |
220 |
taaaaggcatcaccgctataaagtatgagtgaacaaaaagtcattgcaatcagaacctga |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||| |
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| T |
5038871 |
taaaaggcatcaccgctataaagtatgagtgaacaaaaattcattgtaatcggaacctga |
5038930 |
T |
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