View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5017_low_15 (Length: 264)
Name: NF5017_low_15
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 3546398 - 3546613
Alignment:
| Q |
26 |
tttaagcacaatatatgatatcataaggaaattcaaacgacgatgagtcgtacacaactcaacaaagatacaaaaactagaacatagtaaaagaatcaat |
125 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3546398 |
tttaagcacaatatatgatatcataaggcaattcaaacgacgatgagtcgtacacaactcaacaaagatacaaaaactagaacatagtaaaagaatcaat |
3546497 |
T |
|
| Q |
126 |
acatcagatattgtattcttcatattacagataaaagaaggatttcaagaactgctgaaactagtgacaatgggaataacaatgatgagaaccagaataa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3546498 |
acatcagatattgtattcttcatattacagataaaagaaggatttcaagaactgctgaaactagtgacaatgggaataacaatgatgagaaccagaataa |
3546597 |
T |
|
| Q |
226 |
gcaagagtataatccc |
241 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
3546598 |
gcaagagtataatccc |
3546613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University