View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_low_18 (Length: 241)
Name: NF5017_low_18
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 44186042 - 44185821
Alignment:
| Q |
3 |
tctcttcacccactcgtcaggatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctc |
102 |
Q |
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| T |
44186042 |
tctcttcacccactcgtcaggatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattatc |
44185943 |
T |
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| Q |
103 |
atcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatctta |
202 |
Q |
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| T |
44185942 |
atcgctcaagttaaaagaaaccatgtatggatcagctacattcgtatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatctta |
44185843 |
T |
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| Q |
203 |
tagtcgtcattaacagggtcat |
224 |
Q |
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||||||||||||| |||||||| |
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| T |
44185842 |
tagtcgtcattaatagggtcat |
44185821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 7 - 185
Target Start/End: Complemental strand, 1327196 - 1327019
Alignment:
| Q |
7 |
ttcacccactcgtcaggatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcg |
106 |
Q |
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| T |
1327196 |
ttcacccactcgtcaggatcagtttctatctt-cacccactcattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattg |
1327098 |
T |
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| Q |
107 |
ctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacacct |
185 |
Q |
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| T |
1327097 |
ctcaagttaaaagaaaccatgtatgcatcagctacattcgtgttcgcccaccaatgacacattccattcaagtacacct |
1327019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 4877718 - 4877677
Alignment:
| Q |
49 |
atcaggatagctatcttgcatatccaagggtaaatgtgtagt |
90 |
Q |
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| T |
4877718 |
atcagaatagctatcttgcatatccaagggtaaatgtgtagt |
4877677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 224
Target Start/End: Complemental strand, 4877479 - 4877441
Alignment:
| Q |
186 |
catgacgaatgatcttatagtcgtcattaacagggtcat |
224 |
Q |
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| T |
4877479 |
catgacgaatgatcttatagtcgttattaacagggtcat |
4877441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 191 - 224
Target Start/End: Complemental strand, 1326869 - 1326836
Alignment:
| Q |
191 |
cgaatgatcttatagtcgtcattaacagggtcat |
224 |
Q |
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| T |
1326869 |
cgaatgatcttatagtcgtcattaacagggtcat |
1326836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 93 - 183
Target Start/End: Complemental strand, 5388269 - 5388179
Alignment:
| Q |
93 |
agaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacac |
183 |
Q |
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| T |
5388269 |
agaagttctcattgctcaagttaaaagaaaccatgtatgcatcatctatatctctattcgcccaccaatgacacagtccattcaagtacac |
5388179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 5388053 - 5388018
Alignment:
| Q |
189 |
gacgaatgatcttatagtcgtcattaacagggtcat |
224 |
Q |
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| T |
5388053 |
gacgaatgatcttatagtcgtcattaatagggtcat |
5388018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 26532269 - 26532180
Alignment:
| Q |
40 |
cacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgta |
129 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||| ||||||| | || ||||| |||||||||||||||||||||||| |
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| T |
26532269 |
cacccattcatcatgatatctatcttgcatatccaagggtaacagtgtagtagaaaacatctcagtgctcaagttaaaagaaaccatgta |
26532180 |
T |
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