View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5017_low_2 (Length: 543)
Name: NF5017_low_2
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5017_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 84 - 543
Target Start/End: Original strand, 42376433 - 42376898
Alignment:
| Q |
84 |
catatttatgactttattttctcacaaggtgactacttaacaaacagtacaagtttcttcaaaactgcaaaccctaactataacactcacaaacctcaaa |
183 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42376433 |
catatttatgactttattttctctcaaggtgactacttaacaaacagtacaagtttcttcaaaactgcaaaccctaactataacactcacaaacctcaaa |
42376532 |
T |
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| Q |
184 |
tcaaacccattacaatatttgcactcaccacactttaactactatatcaaggtcataacatatatcttccactagtataagatatgnnnnnnnnncaaaa |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42376533 |
tcaaacccattacaatatttgcactcaccacactttaactactatatcaaggtcataacatatatcttccactagtataagatatgaaaaaaaaacaaaa |
42376632 |
T |
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| Q |
284 |
taagcttaaaatctaaatctagttggagagtaaccaagctaaatttagtcactaacaaactctactaagctaaaatgatcataaataattaagggatgga |
383 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42376633 |
taagcttaaaatctaaatctagttggagtgtaaccaagctaaatttagtcactaacaaactctactaagctaaaatgatcataaataattaagggatgga |
42376732 |
T |
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| Q |
384 |
aaaactttcccctaatatcaatggtcacttcaaaatccatagttctgaacacggttctaaattgtggtcc------gcaactgcaactgcagtctcatta |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
42376733 |
aaaactttcccctaatatcaatggtcacttcaaaatccatagttctgaacacggttctaaattgtggtccgcaattgcaactgcaactgcagtctcatta |
42376832 |
T |
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| Q |
478 |
cacaaatatcgattagcaaacaaatgaagctagagaatcttgaagtgcaacacacaaaaatttctc |
543 |
Q |
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| T |
42376833 |
cacaaatatcgactagcaaacaaatgaagctagagaatcttgaagtgcaacacacaaaaatttctc |
42376898 |
T |
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Back To:
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Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 20320899 - 20320820
Alignment:
| Q |
279 |
caaaataagcttaaaatctaaatctagttggagagtaaccaagctaaatttagtcactaacaaactctactaagctaaaa |
358 |
Q |
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|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
20320899 |
caaaatcagcttaaaatctaaatatcgttggagagtaaccaagctaaatttagtcactatcaaactctactaagctaaaa |
20320820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 279 - 358
Target Start/End: Complemental strand, 34151644 - 34151565
Alignment:
| Q |
279 |
caaaataagcttaaaatctaaatctagttggagagtaaccaagctaaatttagtcactaacaaactctactaagctaaaa |
358 |
Q |
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|||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
34151644 |
caaaatcagcttaaaatctaaatatcgttggagagtaaccaagctaaatttagtcactatcaaactctactaagctaaaa |
34151565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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