View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5017_low_7 (Length: 412)

Name: NF5017_low_7
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5017_low_7
NF5017_low_7
[»] chr3 (1 HSPs)
chr3 (1-392)||(17353852-17354239)
[»] chr4 (2 HSPs)
chr4 (94-185)||(55510541-55510633)
chr4 (2-40)||(55510629-55510667)
[»] chr8 (3 HSPs)
chr8 (1-78)||(16718298-16718375)
chr8 (2-164)||(14302049-14302207)
chr8 (1-78)||(16732151-16732228)
[»] chr7 (2 HSPs)
chr7 (17-81)||(44409496-44409560)
chr7 (2-46)||(44410963-44411007)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 17353852 - 17354239
Alignment:
Q  1 gaaaataaactgtcagatttaatcaatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacacacaannnnnnnctcgtttcatca 100  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||       ||| | ||||||    
T  17353852 gaaaataaaccgtcagatttaatcaatgattgagattcattaaaaacaaaagcaa---catttacatgttatcacacacaatttttttctcctatcatca 17353948  T
Q  101 tcaccaaaaacacacaagtgcaatttatgcatagaaacatcaagatcatcaatttgtctaacatttatcatcatctatagcagtttaagatatttttaga 200  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  17353949 tcaccaaaaacacacaagtgcaatttatgcatataaacatcaagattatcaatttgtctaacatttatcatcatctataggagtttaagagatttttaga 17354048  T
Q  201 tataaacttcacaaaatgtcaaacttcgcaaatttttagatccatatatgtaaccatcaaacattgnnnnnnnatgttgatccaatattataaagtatgt 300  Q
    |||| | |||||||||| |||||||||  |||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  17354049 tatacatttcacaaaatttcaaacttcataaatttttagatccatatatgtaaccatcaaacattg-ttttttatgttgatccaatattataaagtatgt 17354147  T
Q  301 ttatataactgtcaaacannnnnnnnnnngttgatccaatattacaaagtatgttcttgtatgttccccaattgttgctgccctgatgaaaa 392  Q
    |||| ||||| |||||||           ||||||||||||||| ||||||||||||| |||||||  ||| |||||||| |||||| ||||    
T  17354148 ttatgtaactctcaaacattgttttttttgttgatccaatattaaaaagtatgttcttatatgttcatcaagtgttgctgtcctgataaaaa 17354239  T

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Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 94 - 185
Target Start/End: Complemental strand, 55510633 - 55510541
Alignment:
Q  94 ttcatcatcaccaaaaacacacaagtgcaatttatgcata-gaaacatcaagatcatcaatttgtctaacatttatcatcatctatagcagtt 185  Q
    |||||||||||||||| ||||||| ||||| |||| |||  |||||||||||||||||||||||||||||||| |||| |||| |||| ||||    
T  55510633 ttcatcatcaccaaaaccacacaaatgcaaattatacatccgaaacatcaagatcatcaatttgtctaacattcatcaacatccataggagtt 55510541  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 40
Target Start/End: Complemental strand, 55510667 - 55510629
Alignment:
Q  2 aaaataaactgtcagatttaatcaatgattgagattcat 40  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  55510667 aaaaaaaattgtcagatttaatcaatgattgagattcat 55510629  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16718375 - 16718298
Alignment:
Q  1 gaaaataaactgtcagatttaatcaatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacaca 78  Q
    ||||||||||  ||||| || | ||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||    
T  16718375 gaaaataaaccatcagaattgaccaatgattgagattcattaaaaacaaaagtaagaaaatttacatattatcacaca 16718298  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 164
Target Start/End: Complemental strand, 14302207 - 14302049
Alignment:
Q  2 aaaataaactgtcagatttaatcaatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacacacaannnnnnnctcgtttcatcat 101  Q
    ||||||||| |||| ||||||||||||||| ||||||||| |||||||||| ||||||| |||||   |   ||||||||       ||    | |||||    
T  14302207 aaaataaaccgtcaaatttaatcaatgattcagattcattcaaaacaaaagtaagaacagttacacactt--acacacaattattatcta---taatcat 14302113  T
Q  102 caccaaaaacacacaagtgcaatttatgcatag-aaacatcaagatcatcaatttgtctaacat 164  Q
    |||||| ||||||||||||||| |||||| | | ||||||||||| ||||||||||||||||||    
T  14302112 caccaagaacacacaagtgcaaattatgcgttggaaacatcaagaccatcaatttgtctaacat 14302049  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 16732228 - 16732151
Alignment:
Q  1 gaaaataaactgtcagatttaatcaatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacaca 78  Q
    ||||||||||  ||| |||| | ||||||||||||||||||||||||||||  ||||| |||||||| || |||||||    
T  16732228 gaaaataaaccatcaaatttgaccaatgattgagattcattaaaaacaaaaataagaaaatttacatattgtcacaca 16732151  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 44409496 - 44409560
Alignment:
Q  17 atttaatcaatgattgagattcattaaaaacaaaagcaagaacatttacatgttatcacacacaa 81  Q
    ||||||| |||||| |||||||||||||| |||||| || ||||||||||| | |||||||||||    
T  44409496 atttaattaatgatcgagattcattaaaatcaaaagtaaaaacatttacatatcatcacacacaa 44409560  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 46
Target Start/End: Complemental strand, 44411007 - 44410963
Alignment:
Q  2 aaaataaactgtcagatttaatcaatgattgagattcattaaaaa 46  Q
    ||||||||| || |||||||||||||| || ||||||||||||||    
T  44411007 aaaataaaccgttagatttaatcaatgttttagattcattaaaaa 44410963  T

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