View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5017_low_8 (Length: 383)

Name: NF5017_low_8
Description: NF5017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5017_low_8
NF5017_low_8
[»] chr7 (25 HSPs)
chr7 (1-338)||(21787157-21787509)
chr7 (232-362)||(21746565-21746698)
chr7 (223-359)||(21803282-21803420)
chr7 (1-120)||(21667061-21667180)
chr7 (1-119)||(21789915-21790033)
chr7 (1-120)||(21658205-21658324)
chr7 (1-204)||(21994989-21995202)
chr7 (1-122)||(21630522-21630643)
chr7 (235-358)||(21648449-21648575)
chr7 (261-327)||(21667273-21667342)
chr7 (1-67)||(21793553-21793619)
chr7 (1-120)||(15715376-15715494)
chr7 (261-327)||(21698398-21698463)
chr7 (1-120)||(21706046-21706165)
chr7 (312-358)||(21683615-21683661)
chr7 (312-358)||(21728385-21728431)
chr7 (1-67)||(21773629-21773695)
chr7 (1-94)||(21698186-21698279)
chr7 (21-120)||(21765692-21765791)
chr7 (312-358)||(21717678-21717724)
chr7 (19-67)||(21653621-21653669)
chr7 (302-342)||(21794176-21794216)
chr7 (19-82)||(21648294-21648357)
chr7 (221-258)||(21794112-21794149)
chr7 (1-73)||(21803514-21803586)
[»] scaffold0182 (1 HSPs)
scaffold0182 (9-115)||(27024-27130)


Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-100; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 21787157 - 21787509
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||| |||||||| ||||||||| |  |||| |||||| ||  |||||||||||||    
T  21787157 ttgggccattattgcattcattgctgcgtttactgcccttgttcttactttcattcaaacatggtttacggttaacccggctagcaaataaaggtggttc 21787256  T
Q  101 gttatagcaatgttgctttcatacgaataaaatttcgtaac-------------gtttgagttggtaatgcaccacgcataataattgccttctggtaag 187  Q
    ||||| |||||||||||||||||| | ||||| ||||||||             || || ||||||| ||||||  |||||||||||| |||||||||||    
T  21787257 gttatggcaatgttgctttcatacaattaaaaattcgtaacaaaaataggtcgagtatgtgttggtattgcaccgtgcataataattgtcttctggtaag 21787356  T
Q  188 gcaagtagtgtacttcacttctctg--gattttgttgaattttttagttaagttggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaa 285  Q
    ||||||||||||||| |||||||||  |||| | ||||||||||  ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21787357 gcaagtagtgtactttacttctctgtggattgttttgaatttttgcgttaagttggtgtgtcccttcatgagtcttgactatgagtatctcagaaataaa 21787456  T
Q  286 gagtgccttttctgtgttgtgtgtttgaattgaaacatgaattttcatatttc 338  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  21787457 gagtgccttttctgtgttgtttgtttgaattgaaacatgaattttcatatttc 21787509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 232 - 362
Target Start/End: Original strand, 21746565 - 21746698
Alignment:
Q  232 gttaagttggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaagagtgccttt---tctgtgttgtgtgtttgaattgaaacatgaatt 328  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||   | |||| || |||||||||||||||||||||||    
T  21746565 gttaagtttgtgtgtcccttcttgagtcttgactatgagtatttcaaaaataaagagtgtctttttctttgtgatgagtgtttgaattgaaacatgaatt 21746664  T
Q  329 ttcatatttcaagttaatttatttaaattaatat 362  Q
    ||||||||||||||||||||||| |||| |||||    
T  21746665 ttcatatttcaagttaatttattcaaataaatat 21746698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 223 - 359
Target Start/End: Complemental strand, 21803420 - 21803282
Alignment:
Q  223 aattttttagttaagttggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaagagtgcctttt-ctgtgt--tgtgtgtttgaattgaa 319  Q
    |||||||  |||||||| | |||||| |||||||||||||||||||||||| ||| |||||||| | ||||||| || |||  |||||||||||||||||    
T  21803420 aatttttgggttaagtttgagtgtcc-ttcttgagtcttgactatgagtatttcaaaaataaagtgagcctttttctttgtaatgtgtgtttgaattgaa 21803322  T
Q  320 acatgaattttcatatttcaagttaatttatttaaattaa 359  Q
    |||||||||||||||||| ||||||||||||| |||||||    
T  21803321 acatgaattttcatattttaagttaatttattcaaattaa 21803282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 21667061 - 21667180
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    ||||||||||| |||| || |||||||||||| |||| |||||||||| |||||||||||||||||| | ||| | |||||||||| |||||||||| ||    
T  21667061 ttgggccattactgcattccttgctgcgtttatcgccattgttcttactttcattcagacatggtttacgattcacccggcttgctaataaaggtggctc 21667160  T
Q  101 gttatagcaatgttgctttc 120  Q
    |||||  |||||||| ||||    
T  21667161 gttatgacaatgttgttttc 21667180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 21789915 - 21790033
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    |||||||||||||||| || |||||||||||| |||||||| ||| || |||||||| |||||||||||  || | ||||||||||  |||||||||||     
T  21789915 ttgggccattattgcattccttgctgcgtttatcgcccttgctctaactttcattcaaacatggtttgcggttgacccggcttgctagtaaaggtggttt 21790014  T
Q  101 gttatagcaatgttgcttt 119  Q
    ||||| |||||||||||||    
T  21790015 gttatggcaatgttgcttt 21790033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 21658205 - 21658324
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    |||||||||||||||| ||| ||||||| ||| ||||||||||||||| |||||||||||||||||| ||||| | |||||| ||  ||||| ||| |||    
T  21658205 ttgggccattattgcattcactgctgcggttatcgcccttgttcttactttcattcagacatggtttacaattcaaccggctagcaaataaatgtgattc 21658304  T
Q  101 gttatagcaatgttgctttc 120  Q
    |||||  |||||||| ||||    
T  21658305 gttatgacaatgttgttttc 21658324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 21994989 - 21995202
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    ||||||| | |||||| || ||||||| |||| |||||||| |||||| || ||||||||||||||| || || | |||||| |   ||||||||||||     
T  21994989 ttgggccttcattgcattcgttgctgcatttatcgcccttgctcttactttaattcagacatggtttacagttcaaccggctagtaaataaaggtggttt 21995088  T
Q  101 gttatagcaatgttgctttcatacgaataaaatttcgtaac--------gt---ttgagttggtaatgcaccacgcataataattgccttctggtaaggc 189  Q
    ||||| |||||||||||||| || || ||||||||||||||        ||    || ||||||||| |||||| ||||||||||| |||||||||||||    
T  21995089 gttatggcaatgttgctttcttaagattaaaatttcgtaacaaaaataggtcaagtgtgttggtaatacaccacacataataattgtcttctggtaaggc 21995188  T
Q  190 aagtagtgtacttca 204  Q
    |||| ||||||||||    
T  21995189 aagt-gtgtacttca 21995202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 21630522 - 21630643
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    |||||||||||||||| ||||||||||| ||  || |||||||||||| |||||||||||||||||| ||||| | ||| || ||  ||||| ||| |||    
T  21630522 ttgggccattattgcattcattgctgcggttgtcgtccttgttcttactttcattcagacatggtttacaattcacccgactagcaaataaaagtgattc 21630621  T
Q  101 gttatagcaatgttgctttcat 122  Q
    |||||  |||||||| ||||||    
T  21630622 gttatgacaatgttgttttcat 21630643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 235 - 358
Target Start/End: Original strand, 21648449 - 21648575
Alignment:
Q  235 aagttggtgtgtcccttcttgagtcttgactatgagtatctcagaaataaagagtgccttttc---tgtgttgtgtgtttgaattgaaacatgaattttc 331  Q
    ||||||| |||| ||||||| ||||||||||||| |||| |   |||| ||||||| |||||    |||| ||||| |  ||||||||||||||||||||    
T  21648449 aagttggcgtgtaccttctttagtcttgactatgtgtatttataaaatgaagagtgtctttttgattgtgctgtgtataagaattgaaacatgaattttc 21648548  T
Q  332 atatttcaagttaatttatttaaatta 358  Q
    |||||||||||||||||||| ||||||    
T  21648549 atatttcaagttaatttattcaaatta 21648575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 21667273 - 21667342
Alignment:
Q  261 tgactatgagtatctcagaaataaagagtgcctttt---ctgtgttgtgtgtttgaattgaaacatgaat 327  Q
    ||||||||||||| ||| ||||||||||||||||||   |||| ||||||||||||||||||||||||||    
T  21667273 tgactatgagtatttcaaaaataaagagtgccttttttcctgtattgtgtgtttgaattgaaacatgaat 21667342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21793553 - 21793619
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggttt 67  Q
    ||||||||||| |||| || |||||||||||| |||||||| |||||| ||||||||||||||||||    
T  21793553 ttgggccattactgcattccttgctgcgtttatcgcccttgctcttactttcattcagacatggttt 21793619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 15715376 - 15715494
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    ||||||||||| |||| || |||||||||||| |||||||| |||||| |||||||||||||| ||| |  |||| ||| || ||  | |||||||||||    
T  15715376 ttgggccattactgcattccttgctgcgtttatcgcccttgctcttactttcattcagacatgatttactgttaacccgcctagc-aaaaaaggtggttc 15715474  T
Q  101 gttatagcaatgttgctttc 120  Q
    |||||  |||||||| ||||    
T  15715475 gttatgacaatgttgttttc 15715494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 261 - 327
Target Start/End: Original strand, 21698398 - 21698463
Alignment:
Q  261 tgactatgagtatctcagaaataaagagtgcc-ttttctgtgttgtgtgtttgaattgaaacatgaat 327  Q
    |||||||||||| |||| |||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21698398 tgactatgagta-ctcaaaaataaagagtgcctttttctgtgttgtgtg-ttgaattgaaacatgaat 21698463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 21706046 - 21706165
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttc 100  Q
    ||||||| |||||||  || ||||||| ||||| ||||||| |||||| |||||||||||||||||| || || | ||||||  |  ||||||||| |||    
T  21706046 ttgggccgttattgccttccttgctgcttttactgcccttgctcttactttcattcagacatggtttacagttcacccggctaacaaataaaggtgcttc 21706145  T
Q  101 gttatagcaatgttgctttc 120  Q
    |||||  |||||||| ||||    
T  21706146 gttatgacaatgttgttttc 21706165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 21683615 - 21683661
Alignment:
Q  312 gaattgaaacatgaattttcatatttcaagttaatttatttaaatta 358  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||    
T  21683615 gaattgaaacatgaattttcatatttcaacttaatttattcaaatta 21683661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 21728385 - 21728431
Alignment:
Q  312 gaattgaaacatgaattttcatatttcaagttaatttatttaaatta 358  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  21728385 gaattgaaacatgaactttcatatttcaagttaatttattcaaatta 21728431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 21773629 - 21773695
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggttt 67  Q
    |||||||||||||||| ||||||||||  | | ||| ||||||||||| ||||||||||||||||||    
T  21773629 ttgggccattattgcattcattgctgctctcatcgcgcttgttcttactttcattcagacatggttt 21773695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 21698186 - 21698279
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaagg 94  Q
    |||| ||||||||||| ||| |||||||| || |||||||||||||||  |||||||||||| |||| | ||| | |||||||||  |||||||    
T  21698186 ttggaccattattgcattcagtgctgcgtctatcgcccttgttcttactctcattcagacattgtttacgattcacccggcttgcaaataaagg 21698279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 21765692 - 21765791
Alignment:
Q  21 ttgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttcgttatagcaatgttgctttc 120  Q
    ||||||| ||||| ||||||| |||||| |||||||||||||||||| |  || | |||||| ||  |||| |||||||||||||  |||||||| ||||    
T  21765692 ttgctgcatttactgcccttgctcttactttcattcagacatggtttacggttcacccggctagcaaataatggtggttcgttatgacaatgttgttttc 21765791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 21717678 - 21717724
Alignment:
Q  312 gaattgaaacatgaattttcatatttcaagttaatttatttaaatta 358  Q
    |||||||||||||||||||||||| | ||||||||||||| ||||||    
T  21717678 gaattgaaacatgaattttcatatattaagttaatttattcaaatta 21717724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 21653621 - 21653669
Alignment:
Q  19 cattgctgcgtttaccgcccttgttcttacgttcattcagacatggttt 67  Q
    |||||||||| ||| |||||||| |||||| ||||||||||||||||||    
T  21653621 cattgctgcggttatcgcccttgctcttactttcattcagacatggttt 21653669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 342
Target Start/End: Original strand, 21794176 - 21794216
Alignment:
Q  302 ttgtgtgtttgaattgaaacatgaattttcatatttcaagt 342  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  21794176 ttgtctgtttgaattgaaacatgaattgtcatatttcaagt 21794216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 21648294 - 21648357
Alignment:
Q  19 cattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggct 82  Q
    ||||||||| |||| |||||||| |||||| ||||||||||||  |||||||||| | ||||||    
T  21648294 cattgctgcatttatcgcccttgctcttactttcattcagacagtgtttgcaattcacccggct 21648357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 258
Target Start/End: Original strand, 21794112 - 21794149
Alignment:
Q  221 tgaattttttagttaagttggtgtgtcccttcttgagt 258  Q
    |||||||||  |||||||||||||||||||||||||||    
T  21794112 tgaatttttgggttaagttggtgtgtcccttcttgagt 21794149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 21803586 - 21803514
Alignment:
Q  1 ttgggccattattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaatt 73  Q
    |||| ||||||||||| || ||||||| ||||  ||||| | |||||| ||||||||||||| |||| |||||    
T  21803586 ttggaccattattgcattccttgctgcatttattgccctcgctcttactttcattcagacattgtttacaatt 21803514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 115
Target Start/End: Original strand, 27024 - 27130
Alignment:
Q  9 ttattgcagtcattgctgcgtttaccgcccttgttcttacgttcattcagacatggtttgcaattaatccggcttgctgataaaggtggttcgttatagc 108  Q
    |||||||| || ||| ||| ||||| ||||||| |||||| |||||||||||||||||| |  || | |||||| ||  |||||||| |||||||||  |    
T  27024 ttattgcattccttgttgcatttactgcccttgctcttactttcattcagacatggtttacggttcacccggctagcaaataaaggttgttcgttatgac 27123  T
Q  109 aatgttg 115  Q
    |||||||    
T  27124 aatgttg 27130  T

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