View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018-Insertion-1 (Length: 877)
Name: NF5018-Insertion-1
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 464 - 873
Target Start/End: Original strand, 1503464 - 1503872
Alignment:
| Q |
464 |
ttgggttaaatagaaaagtgttgagtcatggggttagtgaaaataaatgcagctag----gtagagataatatagaaagaggaagaagatgggnnnnnnn |
559 |
Q |
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| T |
1503464 |
ttgggttaaatagaaaagtgttgagtcatggggttagtgaaaataaatgcagctagctaggtagagataatatagaaagaggaagaagttgggaaaaaaa |
1503563 |
T |
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| Q |
560 |
gagtaaggtttgaggtgttgtgtgatgtgtatggnnnnnnnnaagtgaaaccgtgaactactctacgtgtctaacttttctagtttaggtgccttgtcta |
659 |
Q |
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| T |
1503564 |
gattaaggtttgaggtgttgtgtgatgtgtatggttttttttaagtgaaaccgtgaactactctacgtgtctaacttttctagtttaggtgccttctcta |
1503663 |
T |
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| Q |
660 |
atgctttatatttataatgtcttttgaaagaatacggcgatgaaactttacacacattaaatataacgataaaaatataaagtcggtttgaatatgtata |
759 |
Q |
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| T |
1503664 |
atgctttacatttataatgtcttttgaaagaatacggcgatgaaac-ttacacacattaaatataacgataaaaatataaagtcggttcgaatatgtata |
1503762 |
T |
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| Q |
760 |
tctataacttatcacatgtcta-cattttataatatgagttgtacgtacattgagaaccatctacagagaaccatctacacttatatatgtataaatgat |
858 |
Q |
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| T |
1503763 |
tccataacttatcacatgtctagcattttataatatgagttgtacgtatattgagaaccatctacagagaaccatctac----atttatgtataaatgat |
1503858 |
T |
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| Q |
859 |
atgttaagggttgtt |
873 |
Q |
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| T |
1503859 |
atgtt-agggttgtt |
1503872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 8 - 405
Target Start/End: Original strand, 1503019 - 1503405
Alignment:
| Q |
8 |
ataacaacggcaaaatggcctgttctcaaacaaatgatcaatcagtctaaaataataaaacataaaaacttcataacaactatttatctatataatgtta |
107 |
Q |
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| T |
1503019 |
ataaaaacggcaaaatggcctgttctcaaacaaatgatcaatcagtctaaaataataaaacataaaaacttcataacaattatttatctatataatgtta |
1503118 |
T |
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| Q |
108 |
agagaaacaccaaaagaaaataaaattgtcaagagaatttaatatttgtgcagtatgctgctgttagagtgatcctactcatgtgaatcatttcaaaact |
207 |
Q |
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| T |
1503119 |
agagaaataccaaaagaaaataaaattgtcaagagaatttaatatttgtgcagtatgctgctgtta----------actcatgtgaatcatttcataact |
1503208 |
T |
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| Q |
208 |
ttnnnnnnnnnnnnnnttgaatatcagaatagagagactgaaacacagaaacctacatgaagaaaaatggtgagagagtgggnnnnnnnntggtatgaaa |
307 |
Q |
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| T |
1503209 |
ttaaaaaaagaaaaaattgaatatcagaatagagagactgaaacacagaaacctacatgaagaaaaatggtgggagagtggg-aaaaaaatggtatgaaa |
1503307 |
T |
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| Q |
308 |
aagaaaagataagataaggggaaagtaacaatatagaatacgtacaagatcgacgctttcatttttaatctcttcgaggctgatacctcccattttgg |
405 |
Q |
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| T |
1503308 |
aagaaaagataagataaggggaaagtaacaatatagaatacgtacaagatcgacgctttcatttttaatctcttcgaggctgatacctcccatgttgg |
1503405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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