View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018-Insertion-2 (Length: 874)
Name: NF5018-Insertion-2
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 370 - 867
Target Start/End: Original strand, 34933180 - 34933666
Alignment:
| Q |
370 |
acttacatacatacctgcaaccctagaagaagaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgag |
469 |
Q |
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| T |
34933180 |
acttacatacatacctgcaaccctagaagaacaagtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcctgag |
34933279 |
T |
|
| Q |
470 |
cctctctatttatgaatgaacatgtgccatttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattgttttcatgccttca |
569 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34933280 |
cctctctatttatgaatgaacatgtgccctttacacgagagaatattcaaacctctcctgttcttttttgtaagtgtttttcattgttttcaagccttca |
34933379 |
T |
|
| Q |
570 |
ttacttgaaatcattccatgaggagaacaacagaaagagacatatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacataga |
669 |
Q |
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| T |
34933380 |
ttacttgaaatcattccatga-gagaacaacagaaagagacatatatgataatcaacttgagttttgacaaaataaagaagaagaatgaaaatacataga |
34933478 |
T |
|
| Q |
670 |
taccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattcaacaaatt |
769 |
Q |
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| T |
34933479 |
taccttgcgagtgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagag---------acaaatt |
34933569 |
T |
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| Q |
770 |
cttctcattctacttataaggaagcttcaacccaagagattacgaaacgaaaactgtcatgc-atgaaaatacatagataccttggagcttcttcttct |
867 |
Q |
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| T |
34933570 |
cttctcattctacttataa-gaagcttcaaccctagagattacg-aacgaaaactatcatgcaatgaaaatacatagatacgttggagcttcttcttct |
34933666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 8 - 304
Target Start/End: Original strand, 34932818 - 34933114
Alignment:
| Q |
8 |
ctttaaacacaggaatgttgtcgaacatgtgcgcaggagttattccgtgtgcgtatctcgatgggcatcccgctgagtatctcatctttgcgctatagat |
107 |
Q |
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| T |
34932818 |
ctttaaacacaggaaggttgtcgaacatgtgcgcaggagttattccgtgtgtgtatctcgatgggcatcccgctgagtatctcatctttgcactatagat |
34932917 |
T |
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| Q |
108 |
gttgaagatttgggagagagtcggcttcgcagataatatgaaagaacagaattgttagatggtaattagatgatgatgatgatatgtactaattaattaa |
207 |
Q |
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| T |
34932918 |
gttgaagatttgggagagagtcggcttcgcagataatatgaaagaacaaaattgttagatggtaattagatgatgatgatgatatgtactaattaattaa |
34933017 |
T |
|
| Q |
208 |
acacactctatcaaaactaatataatcattccatcaaagaagagaaaatcccgaattcataaggtttaaaccctaacccccaaatcagagaagattc |
304 |
Q |
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| T |
34933018 |
acacactctatcaaaactaatataatcattccatcaaagaagagaaaatcccgaattcacaaggtttaaaccctaacccccaaatcagagaagattc |
34933114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 130; E-Value: 7e-67
Query Start/End: Original strand, 663 - 867
Target Start/End: Original strand, 34926958 - 34927161
Alignment:
| Q |
663 |
acatagataccttgcgaatgaagcaacgattatgaaaatatgattgaaagagatacaaacgaaaactgtcatgcaatgcaaccctagagagacaaattca |
762 |
Q |
| |
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|||||||||||||| || ||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34926958 |
acatagataccttgagagtgaagcaacgaatatgaaaataagattgaaagagataagaacgaaaactgtcatgcaatgcaaccctagagagacaagttca |
34927057 |
T |
|
| Q |
763 |
acaaattcttctcattctacttataaggaagcttcaacccaagagattacgaaacgaaaactgtcatgc-atgaaaatacatagataccttggagcttct |
861 |
Q |
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| T |
34927058 |
acaaattcttctcattctacgtataa-gaagcttcaaccctagagattacgaaa-aaaaactgtcatgcaatgaaattacatagataccttcaagcttct |
34927155 |
T |
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| Q |
862 |
tcttct |
867 |
Q |
| |
|
|||||| |
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| T |
34927156 |
tcttct |
34927161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 385 - 465
Target Start/End: Original strand, 34926734 - 34926816
Alignment:
| Q |
385 |
tgcaaccctagaagaagaagtgt--gtgtgtataaccgaaagagttagttatttgggctgaatgatattttcaagcccaagcc |
465 |
Q |
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| T |
34926734 |
tgcaacccgagaagaacaagtgtgtgtgtgtataaccgaaagagttagttatttgggctgaatgatatttccaaacccaagcc |
34926816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 522 - 566
Target Start/End: Original strand, 34926842 - 34926885
Alignment:
| Q |
522 |
ctctcctgttcttttttgtaagtgtttttcattgttttcatgcct |
566 |
Q |
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| T |
34926842 |
ctctcctgttctttt-tgtaagtgtttttcattgttttcatgcct |
34926885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 299
Target Start/End: Original strand, 38649189 - 38649236
Alignment:
| Q |
252 |
aaaatcccgaattcataaggtttaaaccctaacccccaaatcagagaa |
299 |
Q |
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|||||||| |||||||| ||||||||||||| |||||||||| ||||| |
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| T |
38649189 |
aaaatccccaattcatacggtttaaaccctagcccccaaatccgagaa |
38649236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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