View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018-Insertion-3 (Length: 838)
Name: NF5018-Insertion-3
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018-Insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 652; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 111 - 826
Target Start/End: Complemental strand, 39304771 - 39304060
Alignment:
| Q |
111 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaat |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304771 |
gaacattaactttctcaccttcaatatctctatatttttgaaggtaacattttaatggttccacatattcttcaaagcctaacgttgtaatagcccaaat |
39304672 |
T |
|
| Q |
211 |
aatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccgacacacattcttgaact |
310 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304671 |
aatatcatcaccgttgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccgacacacattcttgaact |
39304572 |
T |
|
| Q |
311 |
gtctcttttgcatcctttgagatttttccatttgcaggaataacttttttcattattctaccaacatttgctataggaagaaaacgatcttgttctttat |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304571 |
gtctcttttgcatcctttgagatttttccatttgcaggaataacttttttcattattctaccaacatttgctataggaagaaaacgatcttgttctttat |
39304472 |
T |
|
| Q |
411 |
tgctattgtgatgatgattatgattattgttgttgattgtttttaaacaatgagtttcagggttttctgtgttgaatccatttggcaaattactatgact |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304471 |
tgctattgtgatgatgattatgattattgttgttgattgtttttaaacaatgagtttcagggttttctgtgttgaatccatttggcaaattactatgact |
39304372 |
T |
|
| Q |
511 |
ctcatcatccattggaactaaattaatgagcttataggaaggatgttacgtgaccttacaatattacatttaaaatttacattattgtatagatatataa |
610 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39304371 |
ctcatcatccattggaactaaattaatgagcttat----aggatgttacgtgaccttacaatattacatttaaaatttacattattgtatagatagataa |
39304276 |
T |
|
| Q |
611 |
actgaaagtgaggcataaaaataggcaagtaagaagggttagttaggagaagtaaaagttnnnnnnnnnnnnntaggcaagtcccccggactcgttctag |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
39304275 |
actgaaagtgaggcataaaaataggcaagtaagaagggttagttaggagaagtaaaagttaaaaaaagaaaaataggcaagtcccccggactcgttctag |
39304176 |
T |
|
| Q |
711 |
atgttgagtacttcatgtaactgccacgacccgatccaattccaacttagataacactattattgtcaatacaaatagaaataccctttgatgacaaatt |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39304175 |
atgttgagtacttcatgtaactgccacgacccgatccaattccaacttagataacactattattgtcaatacaaatagaaataccctttgatgacaaatt |
39304076 |
T |
|
| Q |
811 |
accaaacttaattaac |
826 |
Q |
| |
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|||||||||||||||| |
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|
| T |
39304075 |
accaaacttaattaac |
39304060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 194 - 350
Target Start/End: Complemental strand, 38281774 - 38281618
Alignment:
| Q |
194 |
gttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaaaacttatgaactccg |
293 |
Q |
| |
|
||||| |||||||||| || |||||||||||| ||||| || ||||||||||| ||||| ||||| || ||||| || || | ||||| |||||||| | |
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| T |
38281774 |
gttgtcatagcccaaagaagatcatcaccattaattgttttccttttttctctctgacacttatcagaagcttcaccagtaatgaaactaatgaactcag |
38281675 |
T |
|
| Q |
294 |
acacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaa |
350 |
Q |
| |
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| |||||||||||||| || |||||||| || ||||||||||| ||||||| |||| |
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|
| T |
38281674 |
agacacattcttgaaccgtttcttttgcttcttttgagattttagcatttgctggaa |
38281618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 8 - 48
Target Start/End: Complemental strand, 39304868 - 39304828
Alignment:
| Q |
8 |
gtatatacactattgttgaaatgttgattatttaattcatc |
48 |
Q |
| |
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| T |
39304868 |
gtatatacactattgttgaaatgttgattatttaattcatc |
39304828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 408
Target Start/End: Complemental strand, 44105545 - 44105492
Alignment:
| Q |
354 |
cttttttcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
408 |
Q |
| |
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|||||||||| |||||||| ||||| ||||||||| ||||||||||||||||||| |
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| T |
44105545 |
cttttttcatgattctacccacattggctatagga-gaaaacgatcttgttcttt |
44105492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 179 - 303
Target Start/End: Complemental strand, 41866750 - 41866626
Alignment:
| Q |
179 |
tcttcaaagcctaacgttgtaatagcccaaataatatcatcaccattgattgtctttcttttttctctttgacatttatccgatgcttccccggtgacaa |
278 |
Q |
| |
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|||||||| |||||||| || || ||||||| | ||| || || ||||| ||||||| ||| ||||| ||||| ||||| || ||||| ||||||| | |
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| T |
41866750 |
tcttcaaatcctaacgtagtcatcgcccaaagtagatcgtcgccgttgatcgtctttcgtttctctctctgacacttatcggaagcttcaccggtgatga |
41866651 |
T |
|
| Q |
279 |
aacttatgaactccgacacacattc |
303 |
Q |
| |
|
| || ||||||||||| |||||||| |
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| T |
41866650 |
agctgatgaactccgatacacattc |
41866626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 260 - 408
Target Start/End: Original strand, 39786371 - 39786519
Alignment:
| Q |
260 |
gatgcttccccggtgacaaaacttatgaactccgacacacattcttgaactgtctcttttgcatcctttgagatttttccatttgcaggaataacttttt |
359 |
Q |
| |
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|||||||| || || |||||||| | ||||| || ||||| ||||| | || ||||| ||||| || ||||||||| |||||| ||| | | || || |
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| T |
39786371 |
gatgcttcaccagttacaaaactaacaaactctgagacacactcttgcatggtttctttagcatctttcgagatttttgcatttggaggcaagatttgtt |
39786470 |
T |
|
| Q |
360 |
tcattattctaccaacatttgctataggaagaaaacgatcttgttcttt |
408 |
Q |
| |
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|||| || ||||||||||| ||||| ||||| ||||||||||| ||||| |
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|
| T |
39786471 |
tcatgatcctaccaacattagctattggaagcaaacgatcttgctcttt |
39786519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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