View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018-Insertion-4 (Length: 669)
Name: NF5018-Insertion-4
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018-Insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 295 - 666
Target Start/End: Original strand, 49919673 - 49920045
Alignment:
| Q |
295 |
atgtatccaattaattatgaagacagattccagcatttatcaaaagagagcgcgaatatcgctttttatctgtgagttgtctttctttttatgagcaaaa |
394 |
Q |
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| T |
49919673 |
atgtatccaattaattatgaagacagattccagcatttatcaaaagagagcgcgaatatcgctttttatctgtgagttgtctttctttttatgagcaaaa |
49919772 |
T |
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| Q |
395 |
atatgaaatttaatccaaacatatctgctgcaagagttccaaatataatctgataattattatttatattgtcaggttttccctgaatcactagatgggg |
494 |
Q |
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| T |
49919773 |
atatgaaatttaatccaaacatatctgctgcaagagttccaaatataatctgataattattatttatattgtcaggttttccctgaatcactagatgggg |
49919872 |
T |
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| Q |
495 |
tgccatttaccagtccagcagtatgttatgttaattcaaatgttacatttgtagctattttcccattcataaattaagtaaattgattttcctgctggtt |
594 |
Q |
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| T |
49919873 |
tgccatttaccagtccagcagtatgttatgttaattcaaatgttacatttgtagctattttcctattcataaattaagtaaattgattttcctgctggtt |
49919972 |
T |
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| Q |
595 |
agaattaattg-aagatattatggnnnnnnnagtttgatgatattgtggtttcttcgctgcaggtcctatgtg |
666 |
Q |
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| T |
49919973 |
agaattaattgtaagatatgatggtttttttagtttgatgatattgtggtttcttcgctgcaggtcctatgtg |
49920045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 7 - 185
Target Start/End: Original strand, 49919434 - 49919612
Alignment:
| Q |
7 |
aggtgaaaccattataattactgtttttgatattaagaaatcagaggtattgttttttgtaacttatgctgtaaaaacttttgctaatgcatccaattca |
106 |
Q |
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| T |
49919434 |
aggtgaaaccattataattactgtttttgatattaagaaatcagaggtatcgttttttgtaacttatgctgtaaaaacttttgctaatgcatccaattca |
49919533 |
T |
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| Q |
107 |
atcatatctcatcaatcatcattatatcaatttgttctacttgttcttaaaatatcttcacaagtatctacatggtaaa |
185 |
Q |
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| T |
49919534 |
atcatatctcatcaatcatcattatatcaatttgttctacttgttcttaaaatatcttcacaattatctacatggtaaa |
49919612 |
T |
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