View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5018-Insertion-6 (Length: 514)

Name: NF5018-Insertion-6
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5018-Insertion-6
NF5018-Insertion-6
[»] chr2 (9 HSPs)
chr2 (177-348)||(37642282-37642451)
chr2 (351-462)||(8985574-8985685)
chr2 (351-452)||(32291155-32291256)
chr2 (351-462)||(8986927-8987038)
chr2 (364-423)||(32276952-32277011)
chr2 (351-474)||(38583480-38583602)
chr2 (394-464)||(38588196-38588266)
chr2 (9-86)||(37642505-37642580)
chr2 (351-451)||(1172776-1172875)
[»] chr3 (12 HSPs)
chr3 (351-457)||(46691454-46691559)
chr3 (351-474)||(814375-814498)
chr3 (351-458)||(42531289-42531396)
chr3 (351-456)||(50297460-50297565)
chr3 (357-462)||(30057091-30057196)
chr3 (352-464)||(16462968-16463079)
chr3 (351-458)||(42530590-42530695)
chr3 (351-457)||(50294658-50294762)
chr3 (351-443)||(814260-814351)
chr3 (357-451)||(18088145-18088238)
chr3 (396-457)||(46694050-46694111)
chr3 (403-456)||(29556795-29556847)
[»] chr7 (13 HSPs)
chr7 (351-462)||(15614250-15614361)
chr7 (351-462)||(2628243-2628354)
chr7 (351-462)||(46963064-46963175)
chr7 (372-462)||(6840606-6840696)
chr7 (350-462)||(46964418-46964530)
chr7 (352-464)||(21814428-21814539)
chr7 (351-452)||(44339050-44339151)
chr7 (397-462)||(26403493-26403558)
chr7 (389-452)||(44337385-44337448)
chr7 (388-462)||(26402359-26402433)
chr7 (351-427)||(6841471-6841547)
chr7 (357-405)||(17921256-17921304)
chr7 (388-420)||(21811705-21811737)
[»] chr1 (10 HSPs)
chr1 (351-462)||(15629347-15629458)
chr1 (351-462)||(15630146-15630257)
chr1 (351-462)||(6696015-6696126)
chr1 (388-462)||(28665017-28665090)
chr1 (351-465)||(2073362-2073479)
chr1 (351-465)||(2076894-2077011)
chr1 (424-465)||(2070734-2070775)
chr1 (351-430)||(2071561-2071641)
chr1 (351-422)||(2075099-2075171)
chr1 (403-459)||(3774327-3774382)
[»] chr4 (10 HSPs)
chr4 (351-462)||(16871651-16871762)
chr4 (348-462)||(16543357-16543471)
chr4 (388-456)||(37945521-37945589)
chr4 (358-446)||(16869513-16869601)
chr4 (400-456)||(24131825-24131881)
chr4 (388-462)||(54146651-54146724)
chr4 (399-471)||(52849337-52849409)
chr4 (389-462)||(54148313-54148384)
chr4 (387-462)||(14458575-14458650)
chr4 (424-475)||(24226122-24226171)
[»] chr6 (14 HSPs)
chr6 (352-462)||(33423977-33424087)
chr6 (389-462)||(22868499-22868572)
chr6 (388-455)||(9290661-9290728)
chr6 (351-458)||(21862689-21862796)
chr6 (351-452)||(18984497-18984598)
chr6 (351-458)||(10741772-10741878)
chr6 (391-462)||(18792843-18792914)
chr6 (350-462)||(10740573-10740682)
chr6 (350-458)||(13166434-13166541)
chr6 (403-462)||(28064663-28064723)
chr6 (403-462)||(28063008-28063066)
chr6 (354-405)||(236581-236632)
chr6 (403-462)||(9365107-9365165)
chr6 (412-462)||(2979649-2979698)
[»] chr5 (5 HSPs)
chr5 (359-458)||(24137606-24137705)
chr5 (351-451)||(11320486-11320585)
chr5 (357-462)||(11343924-11344028)
chr5 (390-461)||(6643402-6643473)
chr5 (392-465)||(9512489-9512562)
[»] scaffold0511 (1 HSPs)
scaffold0511 (391-462)||(11227-11298)
[»] scaffold0002 (1 HSPs)
scaffold0002 (351-462)||(406245-406356)
[»] chr8 (11 HSPs)
chr8 (351-452)||(20242727-20242828)
chr8 (351-452)||(20250332-20250433)
chr8 (351-438)||(43615458-43615545)
chr8 (357-457)||(33199415-33199516)
chr8 (389-452)||(20241063-20241126)
chr8 (389-452)||(20251941-20252004)
chr8 (391-462)||(44374651-44374722)
chr8 (351-451)||(43414101-43414199)
chr8 (403-494)||(43516178-43516262)
chr8 (357-462)||(20093300-20093403)
chr8 (388-453)||(16578791-16578856)
[»] scaffold0325 (1 HSPs)
scaffold0325 (351-462)||(14526-14638)
[»] scaffold0007 (1 HSPs)
scaffold0007 (351-425)||(14290-14364)


Alignment Details
Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 177 - 348
Target Start/End: Complemental strand, 37642451 - 37642282
Alignment:
Q  177 ctcaattacaatgtttgcacagaaaaattacaaactctcaaaacaaacttctactcgaaccctaattcatctaaaagactagtattgtttgatgaagaaa 276  Q
    |||||||||||||||||||  ||||||||||||||| |||||||| ||  ||||||||||||||||||| ||||||||||||| ||||  ||||||||||    
T  37642451 ctcaattacaatgtttgcatggaaaaattacaaactttcaaaacacacaactactcgaaccctaattcacctaaaagactagtgttgt--gatgaagaaa 37642354  T
Q  277 actcaatacaagtctctggtaaagggatatctatggaatggtttgtaaacccattaaaatgtatgggtaggt 348  Q
    ||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37642353 actcaatacaagtctcttgtgaagggatatccatggaatggtttgtaaacccattaaaatgtatgggtaggt 37642282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 351 - 462
Target Start/End: Original strand, 8985574 - 8985685
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||   ||||||||| ||||  ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||    
T  8985574 tgttagataataaagtattaggcttaagttattggacatttatattagtaagttaaagtccattagattttattatatattctcttataaccttttgtaa 8985673  T
Q  451 tgttaagctatt 462  Q
    ||||||||||||    
T  8985674 tgttaagctatt 8985685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 32291155 - 32291256
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  32291155 tgttagataataaagtattgagcttaagttattgtgtctttatattagtaagttagagtccattaagatttattatatattctcttataaccttttgtaa 32291254  T
Q  451 tg 452  Q
    ||    
T  32291255 tg 32291256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 462
Target Start/End: Original strand, 8986927 - 8987038
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||   ||||||||| |||   |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  8986927 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaa 8987026  T
Q  451 tgttaagctatt 462  Q
    ||||||||||||    
T  8987027 tgttaagctatt 8987038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 364 - 423
Target Start/End: Original strand, 32276952 - 32277011
Alignment:
Q  364 agtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttat 423  Q
    |||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  32276952 agtattgagcttaagttattggacctttatattagtaagttagagtccattaggttttat 32277011  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 474
Target Start/End: Complemental strand, 38583602 - 38583480
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||| ||||   ||||| ||| |||  ||||||||||||||||||||  || |||| ||||||||||||||| |||||||||||||||||    
T  38583602 tgttagataataaaatattaggcttaaattattgggcctttatattagtaagttagaacccgttagattttattatatattcgcttataaccttttgtaa 38583503  T
Q  451 tgttaagctattttggtattctat 474  Q
    ||| ||  |||||| |||||||||    
T  38583502 tgtcaatttatttt-gtattctat 38583480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 394 - 464
Target Start/End: Complemental strand, 38588266 - 38588196
Alignment:
Q  394 attagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatttt 464  Q
    |||| |||||||||||   ||||||||||||||||||| ||||||||||||||||||||| || |||||||    
T  38588266 attaataagttagagtaggttaggttttattatatattttcttataaccttttgtaatgtcaatctatttt 38588196  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Complemental strand, 37642580 - 37642505
Alignment:
Q  9 ttttcaagtaaatgggggtggtacactactttgccttctcttccttccttgatcgaatcatttgctatgatctcctta 86  Q
    ||||||||||||||| | |||| || || ||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  37642580 ttttcaagtaaatggtg-tggtgcattagtttgc-ttctcttccttccttgatcgaatcatttgctctgatctcctta 37642505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 451
Target Start/End: Complemental strand, 1172875 - 1172776
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||| ||||||  || | |  ||| |||||| ||| |||||||||||| | ||| |||||||||||||| ||||| |||| |||    
T  1172875 tgttagataataaagtattgtacttaaactattaggccttaatattaataaattagagtccattcgattt-attatatattctctcataacattttataa 1172777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 4e-39; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 351 - 457
Target Start/End: Complemental strand, 46691559 - 46691454
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46691559 tgttagataataaagtattgaacttaagttattggacctttatactagtaagttagagtccatta-gttttattatatattctcttataaccttttgtaa 46691461  T
Q  451 tgttaag 457  Q
    |||||||    
T  46691460 tgttaag 46691454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 351 - 474
Target Start/End: Complemental strand, 814498 - 814375
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttt--tattatatattctcttataaccttttgt 448  Q
    ||||| |||||||||||||| |||||||||| |||   ||||||||||||||||||||||||||||||||  |  |||||||||||||||||||| ||||    
T  814498 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgttatatatattctcttataacctcttgt 814399  T
Q  449 aatgttaagctattttggtattctat 474  Q
    ||||||||||||  ||||||||||||    
T  814398 aatgttaagcta--ttggtattctat 814375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 351 - 458
Target Start/End: Original strand, 42531289 - 42531396
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||||| ||||  ||| ||||| ||||  ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  42531289 tgttagataataaaggattgggcttgagttattggacttttatattagtaagttaaagttcattaggttttattatatattctcttataaccttttgtaa 42531388  T
Q  451 tgttaagc 458  Q
    ||||||||    
T  42531389 tgttaagc 42531396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 351 - 456
Target Start/End: Original strand, 50297460 - 50297565
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||||||||||  ||||||||| ||  ||||||||||||||||||||||| ||||| |||||||||||| ||| |||||||||||||||||    
T  50297460 tgttagataataaagtattgtgcttaagttattgagtctttatattagtaagttagagttcattatgttttattatatgttcacttataaccttttgtaa 50297559  T
Q  451 tgttaa 456  Q
    ||||||    
T  50297560 tgttaa 50297565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 357 - 462
Target Start/End: Original strand, 30057091 - 30057196
Alignment:
Q  357 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaa 456  Q
    ||||||||||||| |||| |||||| |||   ||||||||  |||||||||||||||||| |||| |||||||||||||||||| |||||||||||||||    
T  30057091 ataataaagtattaaactcaagttattgggcatttatattcataagttagagtccattagattttgttatatattctcttataatcttttgtaatgttaa 30057190  T
Q  457 gctatt 462  Q
    ||||||    
T  30057191 gctatt 30057196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 464
Target Start/End: Original strand, 16462968 - 16463079
Alignment:
Q  352 gttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaat 451  Q
    |||| ||||||||||||||| |||||| || |    |||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||    
T  16462968 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctctaatattcttttgtaat 16463066  T
Q  452 gttaagctatttt 464  Q
    ||||| |||||||    
T  16463067 gttaatctatttt 16463079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 351 - 458
Target Start/End: Original strand, 42530590 - 42530695
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||| |||| ||||| ||  | ||||||||||||| ||| ||| |||||||||||||||||||||||||||||||| |||||||    
T  42530590 tgttagataataaagtattggacttgagttagtgact-tttatattagtaaattaaagttcattaggttttattatatattctcttataacc-tttgtaa 42530687  T
Q  451 tgttaagc 458  Q
    ||||||||    
T  42530688 tgttaagc 42530695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 351 - 457
Target Start/End: Original strand, 50294658 - 50294762
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| || |||||||||||  ||||||||| || | |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||    
T  50294658 tgttagatgataaagtattgg-cttaagttattg-acctttatattaataagttagagtccattaggttttattatatattatcttataacattttgtaa 50294755  T
Q  451 tgttaag 457  Q
    | |||||    
T  50294756 tattaag 50294762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 443
Target Start/End: Original strand, 814260 - 814351
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataacct 443  Q
    ||||| |||||||||||||| |||||||||| |||   ||||||||||||||||||||||||||||||||  || ||||||||||||||||||    
T  814260 tgttagataataaagtattggacttaagttattgggcatttatattagtaagttagagtccattaggtttcgtt-tatattctcttataacct 814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 451
Target Start/End: Complemental strand, 18088238 - 18088145
Alignment:
Q  357 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaat 451  Q
    ||||||||||||||  |||||| || | |  |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||    
T  18088238 ataataaagtattgggcttaagctattaggcctttatattagtaagttagagtccattagg-tttattatatattctctcataacattttgtaat 18088145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 396 - 457
Target Start/End: Complemental strand, 46694111 - 46694050
Alignment:
Q  396 tagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaag 457  Q
    |||||| ||||||| ||||| |||||||||||||||||| ||||| ||||| ||| ||||||    
T  46694111 tagtaacttagagttcattatgttttattatatattctcatataatcttttctaaagttaag 46694050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 456
Target Start/End: Original strand, 29556795 - 29556847
Alignment:
Q  403 ttagagtccattaggttttattatatattctcttataaccttttgtaatgttaa 456  Q
    ||||| ||||| |||||||||| |||||||| ||||| ||||||||||||||||    
T  29556795 ttagaatccataaggttttatt-tatattcttttatacccttttgtaatgttaa 29556847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 3e-37; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 15614361 - 15614250
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||||||||||  ||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15614361 tgttagataataaagtattgggcttaagttattggacctttatattagcaagttagagtccattaggttttattatatattcttttataaccttttgtaa 15614262  T
Q  451 tgttaagctatt 462  Q
    | ||||||||||    
T  15614261 tattaagctatt 15614250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 2628354 - 2628243
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||||||||||| ||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||    
T  2628354 tgttagataataaagtattgagcttaagttattgagtctttatattagtaagttagagtccattaggttttattatatattctctcataattttttgtaa 2628255  T
Q  451 tgttaagctatt 462  Q
    |||||| |||||    
T  2628254 tgttaaactatt 2628243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 46963175 - 46963064
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||   ||||||||| |||   |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  46963175 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattagatattctcttataaccttttgtaa 46963076  T
Q  451 tgttaagctatt 462  Q
    ||||||||||||    
T  46963075 tgttaagctatt 46963064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 372 - 462
Target Start/End: Complemental strand, 6840696 - 6840606
Alignment:
Q  372 acttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    |||||||||| |||  |||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  6840696 acttaagttattgggcctttatatcagtaagttagagtccgttaggttttattatatattcttttataaccttttgtaatgtaaagctatt 6840606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 350 - 462
Target Start/End: Complemental strand, 46964530 - 46964418
Alignment:
Q  350 ctgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgta 449  Q
    |||||| ||||||||| |||   ||||||||| |||   |||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||    
T  46964530 ctgttagataataaaggattaggcttaagttattgggcatttatattagtacgttagagtccattagattttattatatattctcttataactttttgta 46964431  T
Q  450 atgttaagctatt 462  Q
    || ||||||||||    
T  46964430 atattaagctatt 46964418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 352 - 464
Target Start/End: Original strand, 21814428 - 21814539
Alignment:
Q  352 gttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaat 451  Q
    |||| ||||||||||||||| |||||| || |    |||||||||||||||||||||||||||||| ||||||||||||||||| |||  ||||||||||    
T  21814428 gttagataataaagtattgagcttaagatattaagcctttatattagtaagttagagtccattagg-tttattatatattctctaatattcttttgtaat 21814526  T
Q  452 gttaagctatttt 464  Q
    ||||| |||||||    
T  21814527 gttaatctatttt 21814539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 44339050 - 44339151
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    |||||||||||||| ||||| | |||||||| |||| |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||| ||| ||||    
T  44339050 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacatttagtaa 44339149  T
Q  451 tg 452  Q
    ||    
T  44339150 tg 44339151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 462
Target Start/End: Original strand, 26403493 - 26403558
Alignment:
Q  397 agtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    |||||||||||| | ||||| |||||||||||||||||||||||| ||||||||||||| ||||||    
T  26403493 agtaagttagagccgattagattttattatatattctcttataactttttgtaatgttatgctatt 26403558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 44337385 - 44337448
Alignment:
Q  389 tttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatg 452  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||    
T  44337385 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatg 44337448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 26402359 - 26402433
Alignment:
Q  388 ctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||||||||| ||||||||||  ||||  |||||||||||||||| || |||| ||||||||||||| ||||||    
T  26402359 ctttatattagcaagttagagtttattaaattttattatatattcttttgtaactttttgtaatgttatgctatt 26402433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 6841547 - 6841471
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattata 427  Q
    ||||| |||||||| ||| | |||||||||| |||  |||||||| ||||||||||||||| |||| ||||||||||    
T  6841547 tgttagataataaaatatcggacttaagttattgggcctttatatcagtaagttagagtccgttagattttattata 6841471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 17921304 - 17921256
Alignment:
Q  357 ataataaagtattgaacttaagttactggatctttatattagtaagtta 405  Q
    |||||||||||||  |||||||||| ||  |||||||||||||||||||    
T  17921304 ataataaagtattagacttaagttattgtgtctttatattagtaagtta 17921256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 420
Target Start/End: Original strand, 21811705 - 21811737
Alignment:
Q  388 ctttatattagtaagttagagtccattaggttt 420  Q
    ||||||||||||||||||||||| |||||||||    
T  21811705 ctttatattagtaagttagagtcaattaggttt 21811737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 15629458 - 15629347
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||| |||||  ||||||||| |||| |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  15629458 tgttagataataaaatattgggcttaagttattggacctttatattagtaagttagagttcattagattttattatatattctcttataaccttttgtaa 15629359  T
Q  451 tgttaagctatt 462  Q
    | ||||||||||    
T  15629358 tattaagctatt 15629347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 15630257 - 15630146
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||||||||||||||||||| ||||| ||| |||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  15630257 tgttaaataataaagtattgagcttaaattattgggcctttatattagtaagttagagtctattaggttttattatatattctcttataaccttttggaa 15630158  T
Q  451 tgttaagctatt 462  Q
    | ||||| ||||    
T  15630157 tattaagttatt 15630146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 462
Target Start/End: Original strand, 6696015 - 6696126
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||   ||||||||| |||   |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  6696015 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattaaatattctcttataaccttttgtaa 6696114  T
Q  451 tgttaagctatt 462  Q
    ||||||||||||    
T  6696115 tgttaagctatt 6696126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 28665017 - 28665090
Alignment:
Q  388 ctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||||||    
T  28665017 ctttatattagtaagttagagtccattagg-tttattatatattctctcataacattttgtaatattaagctatt 28665090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 465
Target Start/End: Complemental strand, 2073479 - 2073362
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccattaggttttattatatat--tctcttataaccttttg 447  Q
    ||||| |||||||| |||||  |||||| || | |  ||| ||||||||||||||| |||||||||||||||| |||||||  ||||||||||| |||||    
T  2073479 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataactttttg 2073380  T
Q  448 taatgttaagctattttg 465  Q
    ||||| || |||||||||    
T  2073379 taatgctatgctattttg 2073362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 351 - 465
Target Start/End: Complemental strand, 2077011 - 2076894
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccattaggttttattatatat--tctcttataaccttttg 447  Q
    ||||| |||||||| |||||  |||||| || | |  ||| ||||||||||||||| |||||||||||||||| |||||||  ||||||||||| |||||    
T  2077011 tgttagataataaaatattgggcttaagctattagtccttaatattagtaagttagcagtccattaggttttagtatatatattctcttataactttttg 2076912  T
Q  448 taatgttaagctattttg 465  Q
    ||||| || |||||||||    
T  2076911 taatgctatgctattttg 2076894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 424 - 465
Target Start/End: Complemental strand, 2070775 - 2070734
Alignment:
Q  424 tatatattctcttataaccttttgtaatgttaagctattttg 465  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  2070775 tatatattctcttataactttttgtaatgttatgctattttg 2070734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 351 - 430
Target Start/End: Complemental strand, 2071641 - 2071561
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccattaggttttattatatat 430  Q
    ||||| |||||||| |||||  |||||| || |||  ||| ||||||||||||||| |||||||||||||||| |||||||    
T  2071641 tgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggttttagtatatat 2071561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 351 - 422
Target Start/End: Complemental strand, 2075171 - 2075099
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccattaggtttta 422  Q
    ||||| |||||||| |||||  |||||| || |||  ||| ||||||||||||||| ||||||||||||||||    
T  2075171 tgttagataataaaatattgggcttaagctattgggccttaatattagtaagttagcagtccattaggtttta 2075099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 459
Target Start/End: Complemental strand, 3774382 - 3774327
Alignment:
Q  403 ttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagct 459  Q
    ||||| ||||||||||||||| |||||||||||  ||  ||||||||||||||||||    
T  3774382 ttagaatccattaggttttat-atatattctctattattcttttgtaatgttaagct 3774327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 351 - 462
Target Start/End: Original strand, 16871651 - 16871762
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||   ||||||||| |||   |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  16871651 tgttagataataaagtattaggcttaagttattgggcatttatattagtaagttagagtccattagattttattatatattatcttataaccttttgtaa 16871750  T
Q  451 tgttaagctatt 462  Q
    ||||||||||||    
T  16871751 tgttaagctatt 16871762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 348 - 462
Target Start/End: Original strand, 16543357 - 16543471
Alignment:
Q  348 tactgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttg 447  Q
    |||||||| ||||||||||| || |||||||||| |||   ||||||||||||||||||||| ||||| |||||||||||||||||| | ||||||||||    
T  16543357 tactgttagataataaagtaatggacttaagttattggccttttatattagtaagttagagttcattaagttttattatatattctcatgtaaccttttg 16543456  T
Q  448 taatgttaagctatt 462  Q
     ||||||||| ||||    
T  16543457 caatgttaaggtatt 16543471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 388 - 456
Target Start/End: Original strand, 37945521 - 37945589
Alignment:
Q  388 ctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaa 456  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  37945521 ctttatattagtaagttagagtccattaaattttattatatattctcttataaccttttgtaatgttaa 37945589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 358 - 446
Target Start/End: Original strand, 16869513 - 16869601
Alignment:
Q  358 taataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataacctttt 446  Q
    |||||||||||||| ||||||||| |||   ||||||||||||||||||||| |||||| |||||||||||| ||||||||||| ||||    
T  16869513 taataaagtattgagcttaagttattgggcttttatattagtaagttagagttcattagattttattatatactctcttataacttttt 16869601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 400 - 456
Target Start/End: Original strand, 24131825 - 24131881
Alignment:
Q  400 aagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaa 456  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  24131825 aagttagagtccattaggttttattatatgttctcttataacattttgtaatgttaa 24131881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 388 - 462
Target Start/End: Original strand, 54146651 - 54146724
Alignment:
Q  388 ctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    |||||||||||||||||||||||||||| | ||||| ||||||||||| ||||| ||||||||| ||||||||||    
T  54146651 ctttatattagtaagttagagtccatta-gatttatcatatattctctcataacattttgtaatattaagctatt 54146724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 52849409 - 52849337
Alignment:
Q  399 taagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctattttggtattc 471  Q
    ||||||||||||||||| ||||||||||||||||||   || ||||||||||| || | ||||||| ||||||    
T  52849409 taagttagagtccattaagttttattatatattctcgagtatccttttgtaatatttatctatttttgtattc 52849337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 54148313 - 54148384
Alignment:
Q  389 tttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    |||||||||||||||||||||||| || | ||||||||||||||||| |||| | |||||| | ||||||||||    
T  54148313 tttatattagtaagttagagtccaata-gatttattatatattctctcataa-catttgtattattaagctatt 54148384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 462
Target Start/End: Original strand, 14458575 - 14458650
Alignment:
Q  387 tctttatattagtaagttag-agtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||||||||| |||||||| |||| |||||||||||| ||| |||||||| ||||||||||| || ||||| ||||    
T  14458575 tctttatattactaagttagtagtctattaggttttat-atacattctcttgtaaccttttgtgatattaagttatt 14458650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 424 - 475
Target Start/End: Original strand, 24226122 - 24226171
Alignment:
Q  424 tatatattctcttataaccttttgtaatgttaagctattttggtattctata 475  Q
    |||||||||||| |||||||||||||||||||| |||  |||||||||||||    
T  24226122 tatatattctctaataaccttttgtaatgttaaacta--ttggtattctata 24226171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 2e-29; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 352 - 462
Target Start/End: Complemental strand, 33424087 - 33423977
Alignment:
Q  352 gttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaat 451  Q
    |||| ||||||||||||||| ||||||||| ||  ||||||||||||||||||| ||| ||||||||||||||||||||||||  |||||| ||||||||    
T  33424087 gttagataataaagtattgagcttaagttattgcgtctttatattagtaagttaaagttcattaggttttattatatattctcccataaccctttgtaat 33423988  T
Q  452 gttaagctatt 462  Q
    ||| |||||||    
T  33423987 gttgagctatt 33423977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 22868499 - 22868572
Alignment:
Q  389 tttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  22868499 tttatattagtaagttagagtccattaggttttattatatattctcttataactttttgtaatgttatgctatt 22868572  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 388 - 455
Target Start/End: Complemental strand, 9290728 - 9290661
Alignment:
Q  388 ctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgtta 455  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9290728 ctttatattaataagttagagtccattaggttttattatatattctcttataaccttttgtaatgtta 9290661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 351 - 458
Target Start/End: Original strand, 21862689 - 21862796
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||||||||||| |||||| || ||| |||||||||||| |||||||||| |||||||||||||||||||||||||  ||||  |||||||    
T  21862689 tgttagataataaagtattgagcttaagctattgggtctttatattagcaagttagagtgcattaggttttattatatattctctagtaactctttgtaa 21862788  T
Q  451 tgttaagc 458  Q
    | ||||||    
T  21862789 tattaagc 21862796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 18984497 - 18984598
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    |||||||||||||| |||||  ||||  ||| |||  |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||    
T  18984497 tgttaaataataaaatattgggcttagattattgggcctttatattagtaagttagagtacattatgttttattatatattctcttataacctttagtaa 18984596  T
Q  451 tg 452  Q
    ||    
T  18984597 tg 18984598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 351 - 458
Target Start/End: Original strand, 10741772 - 10741878
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||| |||||  ||||||||| ||| |||||||||||| |||||||||||||||| | ||||||||||||||||| ||||| ||||||||    
T  10741772 tgttagataataaaatattgggcttaagttattgggtctttatattagaaagttagagtccatta-gatttattatatattctctcataacattttgtaa 10741870  T
Q  451 tgttaagc 458  Q
    | ||||||    
T  10741871 tattaagc 10741878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 462
Target Start/End: Complemental strand, 18792914 - 18792843
Alignment:
Q  391 tatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  18792914 tatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgtaatgttaaactatt 18792843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 350 - 462
Target Start/End: Original strand, 10740573 - 10740682
Alignment:
Q  350 ctgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgta 449  Q
    |||||| |||||||| |||||  ||||||||| ||  |||||||||||| || ||||||||||||| |||| |||||||||||||| ||||| |||||||    
T  10740573 ctgttagataataaaatattgggcttaagttattg--tctttatattagcaaattagagtccattacgttt-attatatattctctcataacattttgta 10740669  T
Q  450 atgttaagctatt 462  Q
    || ||||| ||||    
T  10740670 atattaagttatt 10740682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 350 - 458
Target Start/End: Original strand, 13166434 - 13166541
Alignment:
Q  350 ctgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgta 449  Q
    |||||| |||||||||| |||  ||||||||   || || ||||||||  |||||||||| ||||| || |||||||||||||||| |||||||||| ||    
T  13166434 ctgttagataataaagttttgggcttaagttggcgggtccttatattaacaagttagagttcattaagtgttattatatattctctcataacctttt-ta 13166532  T
Q  450 atgttaagc 458  Q
    |||||||||    
T  13166533 atgttaagc 13166541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 28064723 - 28064663
Alignment:
Q  403 ttagagtccattaggttttat-tatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||||||||||||||||||| | ||||||||||  |||||||||||||||||||||||||    
T  28064723 ttagagtccattaggttttatatttatattctctagtaaccttttgtaatgttaagctatt 28064663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 28063066 - 28063008
Alignment:
Q  403 ttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    |||||||||||||| |||||| |||||||||||  |||||||||||||||||||||||||    
T  28063066 ttagagtccattagattttat-atatattctctagtaaccttttgtaatgttaagctatt 28063008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 354 - 405
Target Start/End: Original strand, 236581 - 236632
Alignment:
Q  354 taaataataaagtattgaacttaagttactggatctttatattagtaagtta 405  Q
    |||||||||||||||||| ||||||||| ||| ||||||||||| |||||||    
T  236581 taaataataaagtattgagcttaagttattgggtctttatattactaagtta 236632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 462
Target Start/End: Complemental strand, 9365165 - 9365107
Alignment:
Q  403 ttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||| || |||||||||||| |||||||||||| |||||||||||||||||||| ||||    
T  9365165 ttagattcgattaggttttat-atatattctcttgtaaccttttgtaatgttaagttatt 9365107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 462
Target Start/End: Original strand, 2979649 - 2979698
Alignment:
Q  412 attaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    |||||||||||| | |||||||||| ||| |||||||||||||||||||||    
T  2979649 attaggttttat-acatattctcttgtaatcttttgtaatgttaagctatt 2979698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 9e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 359 - 458
Target Start/End: Original strand, 24137606 - 24137705
Alignment:
Q  359 aataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagc 458  Q
    ||||||||||||| ||| ||||| |||  ||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  24137606 aataaagtattgagcttcagttattgggcctttacactagtaagttagagtctattaggttttattatatattctcttataaccttctgtaatgttaagc 24137705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 451
Target Start/End: Complemental strand, 11320585 - 11320486
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| ||||||| |||||  |||||||||| ||| |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||    
T  11320585 tgttagataataatgtattagacttaagttattggctctttatattagtaagttggagtccatta-attttattatatattctcttataaccttttgtaa 11320487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 11344028 - 11343924
Alignment:
Q  357 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataac-cttttgtaatgtta 455  Q
    ||||||||||||||  ||||| ||| ||| | |||||||||||||||||||||| |||| ||||||||||||| |||||||||||  |||||||||||||    
T  11344028 ataataaagtattgggcttaa-ttattggctatttatattagtaagttagagtc-attaagttttattatatactctcttataacatttttgtaatgtta 11343931  T
Q  456 agctatt 462  Q
    |||||||    
T  11343930 agctatt 11343924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 390 - 461
Target Start/End: Original strand, 6643402 - 6643473
Alignment:
Q  390 ttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctat 461  Q
    ||||||||||||| ||||||| ||||  ||||||||||||||||| |||||||||||  |||||||||||||    
T  6643402 ttatattagtaagatagagtcaattaaattttattatatattctcatataaccttttacaatgttaagctat 6643473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 392 - 465
Target Start/End: Original strand, 9512489 - 9512562
Alignment:
Q  392 atattagtaagttagagtccattaggttttattatatattctctt-ataaccttttgtaatgttaagctattttg 465  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||   ||||||||||||| |||| ||||||||    
T  9512489 atattagtaaattagagtccattagg-tttattatatattctcttgcaaaccttttgtaatattaatctattttg 9512562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0511 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0511
Description:

Target: scaffold0511; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 11227 - 11298
Alignment:
Q  391 tatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||    
T  11227 tatattagtaagttaaagtgcattaagttttattgtatattctcttataaccttttgtaatgttaaactatt 11298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 406356 - 406245
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    ||||| |||||||||||||    |||||||| |||  ||||||||||| |||||||||||| ||| ||||||||||||||||| |||||||||||| |||    
T  406356 tgttagataataaagtattaggtttaagttattgggcctttatattagcaagttagagtcctttaagttttattatatattctattataaccttttctaa 406257  T
Q  451 tgttaagctatt 462  Q
    | ||||| ||||    
T  406256 tattaagttatt 406245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 452
Target Start/End: Original strand, 20242727 - 20242828
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    |||||||||||||| ||||| | |||||||| |||| |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||| ||| ||||    
T  20242727 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacatttagtaa 20242826  T
Q  451 tg 452  Q
    ||    
T  20242827 tg 20242828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 351 - 452
Target Start/End: Complemental strand, 20250433 - 20250332
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    |||||||||||||| ||||| | |||||||| |||| |||||||||||||||||| ||||  |||  |||||||||||||||| ||||||| ||| ||||    
T  20250433 tgttaaataataaaatattggatttaagttattggacctttatattagtaagttaaagtcttttaaattttattatatattctgttataacatttagtaa 20250334  T
Q  451 tg 452  Q
    ||    
T  20250333 tg 20250332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 43615458 - 43615545
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttat 438  Q
    ||||| |||||||| |||||||||| ||||| ||    |||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  43615458 tgttagataataaaatattgaactttagttattgagcttttatattagtaagttagagtccattagattttattatatattttcttat 43615545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 357 - 457
Target Start/End: Original strand, 33199415 - 33199516
Alignment:
Q  357 ataataaagtattgaacttaagttactggatctttatattagtaagttagagtcca-ttaggttttattatatattctcttataaccttttgtaatgtta 455  Q
    ||||||||||||||| ||||||||| ||    ||||||||||||||| |||||  | |||||||||||||||||||  ||||||| ||||||||||||||    
T  33199415 ataataaagtattgatcttaagttattgagcttttatattagtaagtcagagtataattaggttttattatatatttccttataatcttttgtaatgtta 33199514  T
Q  456 ag 457  Q
    ||    
T  33199515 ag 33199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 452
Target Start/End: Original strand, 20241063 - 20241126
Alignment:
Q  389 tttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatg 452  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||    
T  20241063 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatg 20241126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 389 - 452
Target Start/End: Complemental strand, 20252004 - 20251941
Alignment:
Q  389 tttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatg 452  Q
    |||||| |||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||    
T  20252004 tttatagtagtaagttagagtccgttagattttattatatattctcttataacatttagtaatg 20251941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 44374651 - 44374722
Alignment:
Q  391 tatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctatt 462  Q
    ||||||||| |||||||||| |||| ||||||||||||||||| |||||| ||||| ||||||| |||||||    
T  44374651 tatattagtgagttagagtctattatgttttattatatattcttttataatcttttttaatgtttagctatt 44374722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 351 - 451
Target Start/End: Original strand, 43414101 - 43414199
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttattatatattctcttataaccttttgtaa 450  Q
    |||||||||||||||||||| || ||||||| || |  ||||||||| |||||||||||||  ||   ||||||||||||||||| ||||||||||||||    
T  43414101 tgttaaataataaagtattggac-taagttattgaacttttatattaataagttagagtccgcta-aatttattatatattctctcataaccttttgtaa 43414198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 403 - 494
Target Start/End: Original strand, 43516178 - 43516262
Alignment:
Q  403 ttagagtccattaggttttattatatattctcttataaccttttgtaatgttaagctattttggtattctatatattgaaaccctagccgtc 494  Q
    ||||||||||||||||||||| |||||||||||  ||||||| |||||||||||||||   ||||||||    |||||||||||||||||||    
T  43516178 ttagagtccattaggttttat-atatattctctagtaaccttatgtaatgttaagcta--atggtattc----tattgaaaccctagccgtc 43516262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 462
Target Start/End: Complemental strand, 20093403 - 20093300
Alignment:
Q  357 ataataaagtattgaacttaagttactggatctttatattagtaagttag-agtccattaggttttattatatattctcttataaccttttgtaatgtta 455  Q
    |||||||||||||   | ||||||| ||||| ||||||||| ||| |||| |||| ||||||||||||   |||||||||| |||||| |||||||||||    
T  20093403 ataataaagtattaggcataagttattggatatttatattactaaattagcagtctattaggttttat---atattctcttgtaacctcttgtaatgtta 20093307  T
Q  456 agctatt 462  Q
    || ||||    
T  20093306 agttatt 20093300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 453
Target Start/End: Complemental strand, 16578856 - 16578791
Alignment:
Q  388 ctttatattagtaagttag-agtccattaggttttattatatattctcttataaccttttgtaatgt 453  Q
    |||||||||| |||||||| |||||||||| |||||| ||||||||| || ||||||||||||||||    
T  16578856 ctttatattactaagttagcagtccattagattttat-atatattctattgtaaccttttgtaatgt 16578791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 14638 - 14526
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttat-attagtaagtt-agagtccattaggttttattatatattctcttataaccttttgt 448  Q
    ||||| ||||||||||||||  |||||| || |||  |||||| |||| |||||| | ||||  ||||||||||| ||||||||||||||||||||||||    
T  14638 tgttagataataaagtattgggcttaagctattgggcctttatcattactaagttcatagtctgttaggttttat-atatattctcttataaccttttgt 14540  T
Q  449 aatgttaagctatt 462  Q
    | | ||||||||||    
T  14539 agtattaagctatt 14526  T

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Target: scaffold0007 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 14364 - 14290
Alignment:
Q  351 tgttaaataataaagtattgaacttaagttactggatctttatattagtaagttagagtccattaggttttatta 425  Q
    |||||||||||||| |||||  ||||| |||  ||  |||||||||||||||||||||| | ||| |||||||||    
T  14364 tgttaaataataaaatattgggcttaaattatggggcctttatattagtaagttagagtacgttatgttttatta 14290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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