View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018-Insertion-7 (Length: 468)
Name: NF5018-Insertion-7
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 242
Target Start/End: Original strand, 28320197 - 28320431
Alignment:
| Q |
8 |
cctatgatattagaaaaactgaggattaatgattgaaaaataagaaagtagtaaaacttattgatttaaatgcatattcatagggtggtccaaaccaaaa |
107 |
Q |
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| T |
28320197 |
cctatgatattaaaaaaactgaggattaatgattgaaaaataagaaagtagtaaaacttattgatttaaatgtatattcatagagtggtccaaaccaaaa |
28320296 |
T |
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| Q |
108 |
ttaaccggatatcaaaatagtcaaaacaatcattgatttaaatgcatattcattgaataagttgctaatttttgtgagtaatcaaaattgaaagtgacat |
207 |
Q |
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| T |
28320297 |
ttaaccggatatcaaaatagtcaaaacaatcattgatttaaatgcatattcattgaataagttgctaatttttgtgagtaatcaaaattgaaagtgacat |
28320396 |
T |
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| Q |
208 |
gtgctaaacaatatgagctagtgtctaaagtggtc |
242 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
28320397 |
gtgccaaacaatatgagctagtgtctaaagtggtc |
28320431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 308 - 468
Target Start/End: Original strand, 28320498 - 28320658
Alignment:
| Q |
308 |
cagatgcaccatctcattgcggctcaattccgaatttgcttctccaatattaatattaagaagtgaatctaacacatcattgcaaacctcaacaactttg |
407 |
Q |
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| T |
28320498 |
cagatgcaccatctcactgcggctcaattccgaagttgcttctccaatattaatattaagaagtgaatctaacacatcattgcaaacctcaacaactttg |
28320597 |
T |
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| Q |
408 |
gaggatcttgaacgaattctttcttcaataattccatcaaaaatatcacacaacttcttca |
468 |
Q |
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| T |
28320598 |
gaggatcttgaacgaattctttcttcaataattccatcaaaaatctcacacaacttcttca |
28320658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 308 - 468
Target Start/End: Original strand, 28330974 - 28331140
Alignment:
| Q |
308 |
cagatgcaccatctcattgcggctcaattccgaatttgcttctccaatat---taatattaagaagtgaatctaacacatcattgcaaacctcaa---ca |
401 |
Q |
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| T |
28330974 |
cagatgcaccatctcattgcgggtcaattccaaagtggtttctccaacatggttgttgttaagaagtgaatctaacacatcattgcacaccacataatca |
28331073 |
T |
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| Q |
402 |
actttggaggatcttgaacgaattctttcttcaataattccatcaaaaatatcacacaacttcttca |
468 |
Q |
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| T |
28331074 |
actttggaagatcttgaactaattcttttttcaataattccatcaaaaatatcacataacttcttca |
28331140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 361 - 468
Target Start/End: Original strand, 28304379 - 28304486
Alignment:
| Q |
361 |
tattaagaagtgaatctaacacatcattgcaaacctcaacaactttggaggatcttgaacgaattctttcttcaataattccatcaaaaatatcacacaa |
460 |
Q |
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| T |
28304379 |
tattgagaagtgaatctaacccatcattgcaaacctcatcagctttggaagctcttgaacaaattctttcttcaataattccataaaaaatatcacataa |
28304478 |
T |
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| Q |
461 |
cttcttca |
468 |
Q |
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|||||||| |
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| T |
28304479 |
cttcttca |
28304486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 309 - 463
Target Start/End: Original strand, 28296431 - 28296594
Alignment:
| Q |
309 |
agatgcaccatctcattgcggctcaattccgaatttgcttctccaatattaat------attaagaagtgaatctaacacatcattgcaaacctcaa--- |
399 |
Q |
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||||||||||||||||||||||||||||| || | |||||||||| || | ||||||||||||||| |||||||||||| | ||||||| |
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| T |
28296431 |
agatgcaccatctcattgcggctcaattcataagtgctttctccaataatattgttgctattaagaagtgaatccaacacatcattgaacacctcaaaat |
28296530 |
T |
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| Q |
400 |
caactttggaggatcttgaacgaattctttcttcaataattccatcaaaaatatcacacaactt |
463 |
Q |
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| T |
28296531 |
caccattggaagctcttgaacaaattctttcttcaataattccattaaaaatatcacacaactt |
28296594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 311 - 468
Target Start/End: Original strand, 28309927 - 28310087
Alignment:
| Q |
311 |
atgcaccatctcattgcggctcaattccgaatttgcttctccaatattaatattaagaagtgaatctaacacatcattgcaaacctcaacaact---ttg |
407 |
Q |
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| T |
28309927 |
atgcaccatttcattgcggctcaatttattagtggtttcttcaatattgtaattaagaagtgaatctaacacatcattgcacaccttagaatcagaattg |
28310026 |
T |
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| Q |
408 |
gaggatcttgaacgaattctttcttcaataattccatcaaaaatatcacacaacttcttca |
468 |
Q |
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| T |
28310027 |
gaatctcttgaactaattctttcttcaattattccatcaaaaatctcacacaactttttca |
28310087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 396
Target Start/End: Complemental strand, 28288716 - 28288683
Alignment:
| Q |
363 |
ttaagaagtgaatctaacacatcattgcaaacct |
396 |
Q |
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| T |
28288716 |
ttaagaagtgaatctaacacatcattgcaaacct |
28288683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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