View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5018-Insertion-8 (Length: 400)

Name: NF5018-Insertion-8
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5018-Insertion-8
NF5018-Insertion-8
[»] chr2 (5 HSPs)
chr2 (31-94)||(34447374-34447438)
chr2 (148-213)||(11140044-11140109)
chr2 (167-214)||(20513305-20513352)
chr2 (57-93)||(18236253-18236289)
chr2 (57-93)||(39730575-39730611)
[»] chr3 (3 HSPs)
chr3 (297-360)||(20132014-20132077)
chr3 (147-212)||(40516711-40516776)
chr3 (57-93)||(11474975-11475011)
[»] scaffold0210 (1 HSPs)
scaffold0210 (296-377)||(25226-25307)
[»] chr7 (2 HSPs)
chr7 (14-212)||(29538881-29539079)
chr7 (283-331)||(24194507-24194555)
[»] scaffold0049 (1 HSPs)
scaffold0049 (296-377)||(39622-39703)
[»] chr6 (2 HSPs)
chr6 (296-377)||(2879092-2879173)
chr6 (50-93)||(14768212-14768255)
[»] chr8 (2 HSPs)
chr8 (142-213)||(1207341-1207412)
chr8 (261-377)||(1207178-1207293)
[»] chr4 (3 HSPs)
chr4 (242-289)||(43625431-43625478)
chr4 (51-174)||(43625536-43625659)
chr4 (57-93)||(23353750-23353786)
[»] chr5 (2 HSPs)
chr5 (48-93)||(24279568-24279612)
chr5 (48-93)||(24382602-24382646)
[»] chr1 (1 HSPs)
chr1 (296-377)||(22568242-22568322)


Alignment Details
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 34447374 - 34447438
Alignment:
Q  31 ttctcgattctctagtttccataactttcatgtgatgtcttg-ttttgccgaattatatgatttg 94  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||| | |||||||||||||||    
T  34447374 ttctcgattctctagcttccataactttcatgtgatgtcttgttttttctgaattatatgatttg 34447438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 11140109 - 11140044
Alignment:
Q  148 aattacaacgactcaaatcaaaacattataaaagatttcccaaaccatgaataactcactctaaaa 213  Q
    ||||||||||||| |||||||||||||| ||||  ||||| | |||||||  ||||||||||||||    
T  11140109 aattacaacgactaaaatcaaaacattacaaaacgtttccaacaccatgagaaactcactctaaaa 11140044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 167 - 214
Target Start/End: Complemental strand, 20513352 - 20513305
Alignment:
Q  167 aaaacattataaaagatttcccaaaccatgaataactcactctaaaat 214  Q
    ||||||||| ||| ||||||||||| ||||| ||||||||||||||||    
T  20513352 aaaacattacaaatgatttcccaaatcatgagtaactcactctaaaat 20513305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 18236253 - 18236289
Alignment:
Q  57 ttcatgtgatgtcttgttttgccgaattatatgattt 93  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  18236253 ttcatgtgatgtcttgttttgccgagttacatgattt 18236289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 39730611 - 39730575
Alignment:
Q  57 ttcatgtgatgtcttgttttgccgaattatatgattt 93  Q
    |||||||||||||||||||||| || |||||||||||    
T  39730611 ttcatgtgatgtcttgttttgctgatttatatgattt 39730575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 297 - 360
Target Start/End: Complemental strand, 20132077 - 20132014
Alignment:
Q  297 aaacttaaactgttgcttgttctgaagtaatgaaatagccaaaagttagaattttcaaaaattt 360  Q
    ||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||| || ||||||    
T  20132077 aaacttaaattgttggttgttctcaagtaatgaaatagctaaaagttagaatttgcataaattt 20132014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Original strand, 40516711 - 40516776
Alignment:
Q  147 aaattacaacgactcaaatcaaaacattataaaagatttcccaaaccatgaataactcactctaaa 212  Q
    |||||||||||||||||| ||||| |||| |||| |||  | |||||||||  |||||||||||||    
T  40516711 aaattacaacgactcaaaccaaaatattacaaaacattctcaaaaccatgatcaactcactctaaa 40516776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 11475011 - 11474975
Alignment:
Q  57 ttcatgtgatgtcttgttttgccgaattatatgattt 93  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  11475011 ttcatgtgatgtcttgttttgccgatttacatgattt 11474975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 25226 - 25307
Alignment:
Q  296 caaacttaaactgttgcttgttctgaagtaatgaaatagccaaaagttagaattttcaaaaatttaaaaatgacataccttt 377  Q
    |||||||||  |||||||||| || ||||||  ||||||  |||||||||||||| || |||||| ||||||||||||||||    
T  25226 caaacttaatatgttgcttgtcctcaagtaacaaaatagaaaaaagttagaatttgcacaaatttgaaaatgacataccttt 25307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 29539079 - 29538881
Alignment:
Q  14 tcttcaaatcttcgttgttctcgattctctagtttccataactttcatgtgatgtcttgttttgccgaattatatgatttgtataataaaaggctcaaat 113  Q
    |||||||| |||||| |  || |||| ||||| ||||||||||| ||   || || |||| |||| |||||| |||||||  || ||||||| || |||     
T  29539079 tcttcaaaccttcgtcgcacttgattatctagcttccataacttccaaaagaagtattgtcttgctgaattacatgatttaaatcataaaagactgaaaa 29538980  T
Q  114 cacttgtgaagttatttggttagagtagaaagtaaattacaacgactcaaatcaaaacattataaaagatttcccaaaccatgaataactcactctaaa 212  Q
    ||| | |||| |||| ||||||  | |||||  | | ||| |||||| ||| |||||||||| |||| |||||| |||||||||  |||||||||||||    
T  29538979 cacctatgaaattatctggttaaggaagaaataagagtacgacgacttaaaccaaaacattacaaaacatttccaaaaccatgagcaactcactctaaa 29538881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 331
Target Start/End: Original strand, 24194507 - 24194555
Alignment:
Q  283 gtcatcataatcacaaacttaaactgttgcttgttctgaagtaatgaaa 331  Q
    ||||||| || | |||||||||||||||||||||||| |||||| ||||    
T  24194507 gtcatcacaacctcaaacttaaactgttgcttgttctcaagtaacgaaa 24194555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 39622 - 39703
Alignment:
Q  296 caaacttaaactgttgcttgttctgaagtaatgaaatagccaaaagttagaattttcaaaaatttaaaaatgacataccttt 377  Q
    |||||||||  |||||||||| || ||| ||  ||||||  |||||| ||||||| || |||||||||||||||||||||||    
T  39622 caaacttaatatgttgcttgtcctcaaggaacaaaatagaaaaaagtcagaatttgcacaaatttaaaaatgacataccttt 39703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 2879173 - 2879092
Alignment:
Q  296 caaacttaaactgttgcttgttctgaagtaatgaaatagccaaaagttagaattttcaaaaatttaaaaatgacataccttt 377  Q
    |||||||||  |||||||||| || ||||||  |||||| |||||||||||| || || |||||| |||||| |||||||||    
T  2879173 caaacttaatatgttgcttgtcctcaagtaacaaaatagacaaaagttagaaattgcacaaatttgaaaatggcataccttt 2879092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 14768212 - 14768255
Alignment:
Q  50 cataactttcatgtgatgtcttgttttgccgaattatatgattt 93  Q
    |||| ||||||||||||||||||||||||||| ||| |||||||    
T  14768212 catatctttcatgtgatgtcttgttttgccgatttacatgattt 14768255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 1207412 - 1207341
Alignment:
Q  142 aaagtaaattacaacgactcaaatcaaaacattataaaagatttcccaaaccatgaataactcactctaaaa 213  Q
    ||||| ||||||| | |||| | ||||||| ||| |||| |||||| ||||||||| |||||||||||||||    
T  1207412 aaagtgaattacagccactccattcaaaactttacaaaacatttcctaaaccatgagtaactcactctaaaa 1207341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 1207293 - 1207178
Alignment:
Q  261 taaaactatcatatgatgaggcgtcatcataatcacaaacttaaactgttgcttgttctgaagtaatgaaatagccaaaagttagaattttcaaaaattt 360  Q
    ||||| ||||||||||||| || ||||| ||| |   |||| ||| |||||||||| || ||||||  |||||| |||| |||||||||| || |||  |    
T  1207293 taaaaatatcatatgatgatgcttcatcttaaaccggaactaaaattgttgcttgtcctcaagtaaccaaatagacaaatgttagaatttgcacaaa-at 1207195  T
Q  361 aaaaatgacataccttt 377  Q
    |||||| ||||||||||    
T  1207194 aaaaatcacataccttt 1207178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 242 - 289
Target Start/End: Complemental strand, 43625478 - 43625431
Alignment:
Q  242 aaagactcaaaaacatatataaaactatcatatgatgaggcgtcatca 289  Q
    |||||||| ||||||||| |||||  ||||||||||||||||||||||    
T  43625478 aaagactccaaaacatatctaaaaacatcatatgatgaggcgtcatca 43625431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 51 - 174
Target Start/End: Complemental strand, 43625659 - 43625536
Alignment:
Q  51 ataactttcatgtgatgtcttgttttgccgaattatatgatttgtataataaaaggctcaaatcacttgtgaagttatttggttagagtagaaagtaaat 150  Q
    ||||||| |||| | ||||||| |||||| |||||  |||||||||  ||||||| | | || |||||    |||| ||||||||| | | ||| | |||    
T  43625659 ataacttccatgaggtgtcttgctttgccaaattacttgatttgtaccataaaagacccgaaacacttacatagttgtttggttagggaataaattgaat 43625560  T
Q  151 tacaacgactcaaatcaaaacatt 174  Q
    ||||||||||||||||||||||||    
T  43625559 tacaacgactcaaatcaaaacatt 43625536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 23353786 - 23353750
Alignment:
Q  57 ttcatgtgatgtcttgttttgccgaattatatgattt 93  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  23353786 ttcatgtgatgtcttgttttgccgatttacatgattt 23353750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 24279568 - 24279612
Alignment:
Q  48 tccataactttcatgtgatgtcttgttttgccgaattatatgattt 93  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  24279568 tccataactt-catgtgatgtcttgttttgtcgatttatatgattt 24279612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 93
Target Start/End: Complemental strand, 24382646 - 24382602
Alignment:
Q  48 tccataactttcatgtgatgtcttgttttgccgaattatatgattt 93  Q
    |||||||||| ||||||||||||||||||| ||| |||||||||||    
T  24382646 tccataactt-catgtgatgtcttgttttgtcgatttatatgattt 24382602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 22568242 - 22568322
Alignment:
Q  296 caaacttaaactgttgcttgttctgaagtaatgaaatagccaaaagttagaattttcaaaaatttaaaaatgacataccttt 377  Q
    |||||||||||| ||| |||| || |||||| |||||  |||||||| ||||||| || |||| ||| ||||||||||||||    
T  22568242 caaacttaaactattg-ttgtcctcaagtaacgaaatgaccaaaagtaagaatttgcacaaatgtaataatgacataccttt 22568322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University