View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_high_11 (Length: 338)
Name: NF5018_high_11
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_high_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 84 - 338
Target Start/End: Complemental strand, 39305545 - 39305294
Alignment:
| Q |
84 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctcn |
183 |
Q |
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| T |
39305545 |
cactcgagggacaagttagaattattttttctctcacaaaagaagttaaaatggctaaatcaattctattagagaatatctaagcattctctgtctctca |
39305446 |
T |
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| Q |
184 |
nnnnnnn-tctaagcattctcttagcacgtcaaaattaattaattatgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
282 |
Q |
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| T |
39305445 |
aaaaaaaatctaagcattctctaagcacgtcaaaattaatta----tgcgcctctgaaatcaattttgcctctttaaaaggtgtaacttaattaacaaac |
39305350 |
T |
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| Q |
283 |
cagaatcatctcatgagtaattggccatcataagtacgtttagtgattctgtttga |
338 |
Q |
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| T |
39305349 |
cagaatcctctcatgagtcattggccatcataagtacgttgagtgattctgtttga |
39305294 |
T |
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