View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5018_high_2 (Length: 520)
Name: NF5018_high_2
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 173 - 513
Target Start/End: Complemental strand, 34869325 - 34868972
Alignment:
| Q |
173 |
atcagaaaaatattaattttcttaattgcattttcaagtgaatcaattaactaaacaaatccaaaatgtatatcatcaatttagtttggtctattcaact |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34869325 |
atcagaaaaatattaattttcttaattgcattttcaagtgaatcaattaactaaacaaatccaaaatgtatatcatcaatttagtttggtctattcaact |
34869226 |
T |
|
| Q |
273 |
tttaaaaaatgatgaaaattgaacaaaatcaatgtaaaagacatctaatttaaaccttgatcacaac-------------gttttaccttttatctaaaa |
359 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
34869225 |
tttaaaaaatgatgaaaattgaacaaaatcaatgtaaaagacatctaatttaaaccttgatcagaacgtttaatctaaaagttttaccttttatctaaaa |
34869126 |
T |
|
| Q |
360 |
aggcaaaatgataattaactgttagaatttattgagaagcttctctcataagctaccgaaaacacgtgaaattatgaaacggtcaacactctgcaactcg |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
34869125 |
aggcaaaatgataattaactgttagaatttattgagaagcttctctcataagctaccgaaaacacgtgaaattgtgaaacggtcaacactctgcaactcg |
34869026 |
T |
|
| Q |
460 |
cgaaccctagcagcaccgtgtttctcctcttctccatcttccttcttcatctca |
513 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
34869025 |
cgaaccctagcagcaccgtgtctctcctcttctccatcttccttcttcaactca |
34868972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 60 - 175
Target Start/End: Complemental strand, 34869479 - 34869364
Alignment:
| Q |
60 |
ttcatttctcgattttcaaatttgatatgttaaaaacaaaagttgcaacaaacacaaaagaatcaatcaatttagtttggtctgattccacttttaaaaa |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
34869479 |
ttcatttctcgattttcaaatttgatatgttaaaaacaaaagttgcaacaaacacaaaagaatcaatcaatttagtttggtctgactccacttttaaaaa |
34869380 |
T |
|
| Q |
160 |
attaatttgtttgatc |
175 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
34869379 |
attaatttgtttgatc |
34869364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 34869540 - 34869497
Alignment:
| Q |
20 |
tcatatgctcctgaaaattactcgatcttttttagttcagttca |
63 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34869540 |
tcatatgctcctgaaaattactcgatcttttttagttcagttca |
34869497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 51856404 - 51856476
Alignment:
| Q |
100 |
agttgcaacaaacacaaaagaatcaatcaatttagtttggtctgattccacttttaaaaaattaatttgtttg |
172 |
Q |
| |
|
|||||||||||||||||| ||| |||||| ||| || ||| |||||||||||||||||||||| ||||| |
|
|
| T |
51856404 |
agttgcaacaaacacaaacaaatagatcaatgtagcttagtccatttccacttttaaaaaattaattagtttg |
51856476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University