View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5018_high_23 (Length: 241)

Name: NF5018_high_23
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5018_high_23
NF5018_high_23
[»] chr2 (3 HSPs)
chr2 (1-75)||(31591181-31591255)
chr2 (144-215)||(31591267-31591338)
chr2 (5-75)||(31577328-31577398)


Alignment Details
Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 31591181 - 31591255
Alignment:
Q  1 ccattgctaaggtctgacctccttgatccaccacgtgttgttctggttccaaacaaaaaacaataaatacataat 75  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31591181 ccattgctaaggtctgacctccttgatccaccacgtgttgttctggttccaaacaaaaaacaataaatacataat 31591255  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 144 - 215
Target Start/End: Original strand, 31591267 - 31591338
Alignment:
Q  144 tggtataaaacctttatcatttttagtacaccaacaaccaagccctatattatcttacaaagtggatttttt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31591267 tggtataaaacctttatcatttttagtacaccaacaaccaagccctatattatcttacaaagtggatttttt 31591338  T

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Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 31577328 - 31577398
Alignment:
Q  5 tgctaaggtctgacctccttgatccaccacgtgttgttctggttccaaacaaaaaacaataaatacataat 75  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31577328 tgctaaggtctgtcctccttgatccaccacgtgttgttctggttccaaacaaaaaacaataaatacataat 31577398  T

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