View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_high_25 (Length: 237)
Name: NF5018_high_25
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_high_25 |
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| [»] chr7 (2 HSPs) |
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| [»] scaffold0929 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 6379019 - 6378801
Alignment:
| Q |
16 |
agatttttccttaacaacgtggtggggtgcatgagcagaaagcaaatcgcgctctgcaagcttcaacatgcgcgaggtgcattgggtctgtgtatgagat |
115 |
Q |
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| T |
6379019 |
agatttttccttaacaacgtggtggggtgcatgagcagaaagcaaatcgcgctctgcaagcttcaacatgcgcgaggtgcattgggtttgtgtatg---- |
6378924 |
T |
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| Q |
116 |
agatgcatggacttgagg-nnnnnnnnccatgttttcttcattcttcatgtttatttcatccttgatatgagctttggacttaggacaaaattcccccaa |
214 |
Q |
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| T |
6378923 |
agatgcatgaacttgaggttttttttcccttgttttcttcattcttcatgtttatttcatccttgatatgagctttggatttgggacaaaattcccccaa |
6378824 |
T |
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| Q |
215 |
attatttagtcttcatatgtttc |
237 |
Q |
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| T |
6378823 |
attatttagtcttcatatgtttc |
6378801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 30 - 237
Target Start/End: Complemental strand, 6370540 - 6370336
Alignment:
| Q |
30 |
caacgtggtggggtgcatgagcagaaagcaaatcgcgctctgcaagcttcaacatgcgcgaggtgcattgggtctgtgtatgagatagatgcatggactt |
129 |
Q |
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| T |
6370540 |
caacgtggtggggtgcatgagcagaaagcaaatcgcgctctgcaagcttcaacatgcgcgaggtgcattgggtttgtgtatgagat----gcatgaactt |
6370445 |
T |
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| Q |
130 |
gaggnnnnnnnnccat-gttttcttcattcttcatgtttatttcatccttgatatgagctttggacttaggacaaaattcccccaaattatttagtcttc |
228 |
Q |
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| T |
6370444 |
gaggttttttttcccttgttttcttcattcttcatgtttatttcatccttgatatgagctttggatttgggacaaaattcccccaaattatttagtcttc |
6370345 |
T |
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| Q |
229 |
atatgtttc |
237 |
Q |
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| T |
6370344 |
atatgtttc |
6370336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0929 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0929
Description:
Target: scaffold0929; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 145 - 237
Target Start/End: Complemental strand, 1391 - 1298
Alignment:
| Q |
145 |
tgttttcttcattcttcatgtttatttcatccttgatatgagctttggactta-ggacaaaattcccccaaattatttagtcttcatatgtttc |
237 |
Q |
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| T |
1391 |
tgttttcttcattcttcttgtttatttcatccttgatatgagcttgggacttagggacaaagttcccccaagttatttggtcttcatatgtttc |
1298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 147 - 207
Target Start/End: Original strand, 9854987 - 9855047
Alignment:
| Q |
147 |
ttttcttcattcttcatgtttatttcatccttgatatgagctttggacttaggacaaaatt |
207 |
Q |
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| T |
9854987 |
ttttcttcattcttcatgtttttttcatccttgatatgagtttgggactttagacaaaatt |
9855047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 212
Target Start/End: Complemental strand, 32073105 - 32073038
Alignment:
| Q |
145 |
tgttttcttcattcttcatgtttatttcatccttgatatgagctttggacttaggacaaaattccccc |
212 |
Q |
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| T |
32073105 |
tgttttcttcattcttcatgtactttccattcttaatatgagcttaggacttgggaaaaaattccccc |
32073038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 227
Target Start/End: Complemental strand, 38006607 - 38006531
Alignment:
| Q |
152 |
ttcattcttcatgt-ttatttcatccttgatatgagctttggacttaggacaaaattcccccaaattatttagtctt |
227 |
Q |
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| T |
38006607 |
ttcattcttcatgcgttttttaatccttgatatgagattgggacttgagacaaaattcccccgaattgttttgtctt |
38006531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 189
Target Start/End: Complemental strand, 10572064 - 10572020
Alignment:
| Q |
145 |
tgttttcttcattcttcatgtttatttcatccttgatatgagctt |
189 |
Q |
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| T |
10572064 |
tgttttcttcatacttcatgtgcttttcatccttgatatgagctt |
10572020 |
T |
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