View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_high_4 (Length: 488)
Name: NF5018_high_4
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 31591205 - 31590737
Alignment:
| Q |
1 |
caaggaggtcagaccttagcaatgggaatggtggacaaattaataacattggaacaatgaaggagaagaagggtgttagcaagggaaagagagaaatcaa |
100 |
Q |
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| T |
31591205 |
caaggaggtcagaccttagcaatgggagtggtggacaaattaataacattggaacaaagaaggagaaggagggtgttagcaagggaaagagagaaatcaa |
31591106 |
T |
|
| Q |
101 |
aagccccgcttggatgaaggatttctatcgttactgaaggggtgcaactatcactagctttattttattatgtaactattaaaacactatgttattgtct |
200 |
Q |
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| T |
31591105 |
aagccccgcttggatgaaggatttctatcgttactgagggggtgcaactatcactagctttattttattatgtaactattaaaacactatgttattgtct |
31591006 |
T |
|
| Q |
201 |
tctaggcacatggcccaatagtaggctaaccctagatataaaagtgtaatgttgtctcttccttcaagagagaatgaattgaatgcattttatttgtgtt |
300 |
Q |
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| T |
31591005 |
tctaggc-------ccaatagtaggctagccctagatataaaagtgtaatgttgtctccgccttcaacagagaatgaattgaatgcattttatttgtgtt |
31590913 |
T |
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| Q |
301 |
ttattttcctttgcaacttagatcttgtgttaacctaaaaccatctatcattggtgttttcatcttgaatctcaatgcctcctaaacctgccaatccaac |
400 |
Q |
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| T |
31590912 |
ttattttcctttgcaacttagatcttgtgttaacctagaaccatctatcattggtgttttcatcttgaatctcaatgcctcctaaacctgccaattcaac |
31590813 |
T |
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| Q |
401 |
ttctaaagatttggatgaagctattcaagccaccaactccccacattgaagaagccatatgagccacccatcttcat |
477 |
Q |
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| T |
31590812 |
tcccaaagatttggatgaagttattcaagccaccaact-cccacattgaagaagccatatgagccacccatcttcat |
31590737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 31577348 - 31577275
Alignment:
| Q |
1 |
caaggaggtcagaccttagcaatgggaatggtggacaaattaataacattggaacaatgaaggagaagaagggt |
74 |
Q |
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| T |
31577348 |
caaggaggacagaccttagcactgggaatggtggacaaattaataacattggaacaaagaaggagaagaagggt |
31577275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 472
Target Start/End: Complemental strand, 44507602 - 44507472
Alignment:
| Q |
343 |
atctatcattggtgttttcat--cttgaatctcaatgcctcctaaacctgccaatccaacttctaaagatttggatgaagctattcaagccaccaactcc |
440 |
Q |
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| T |
44507602 |
atctatcattggtgctttcattacttgaatcccaatgcctcccaaaatcaccaatccaccgcccaaagactttgatgatgcgattcaagcca-caaatct |
44507504 |
T |
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| Q |
441 |
ccacattgaagaagccatatgagccacccatc |
472 |
Q |
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| T |
44507503 |
ccacattgacgacgccatccgagccacccatc |
44507472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 343 - 472
Target Start/End: Original strand, 8743812 - 8743942
Alignment:
| Q |
343 |
atctatcattggtgttttcat--cttgaatctcaatgcctcctaaacctgccaatccaacttctaaagatttggatgaagctattcaagccaccaactcc |
440 |
Q |
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|||||||||||||| |||||| |||||||| |||||||||| ||| |||||||| | | ||||| || ||||| || |||||||||| ||| || |
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| T |
8743812 |
atctatcattggtgctttcattacttgaatcccaatgcctcccaaaatcaccaatccaccgcccaaagactttgatgatgcgattcaagcca-caaatct |
8743910 |
T |
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| Q |
441 |
ccacattgaagaagccatatgagccacccatc |
472 |
Q |
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| T |
8743911 |
ccacattgacgacgccatccgagccacccatc |
8743942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 344 - 388
Target Start/End: Complemental strand, 44608793 - 44608749
Alignment:
| Q |
344 |
tctatcattggtgttttcatcttgaatctcaatgcctcctaaacc |
388 |
Q |
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|||||||||| || ||||||||||| ||||||||||||| ||||| |
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| T |
44608793 |
tctatcattgctgctttcatcttgattctcaatgcctcccaaacc |
44608749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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