View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_low_10 (Length: 378)
Name: NF5018_low_10
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 5 - 361
Target Start/End: Original strand, 35293423 - 35293779
Alignment:
| Q |
5 |
tgaacacaatcaaaatcnnnnnnnttagaaagaaagggagaaaaagttttgaagacctaataggtatctaaatattattatgcaaatgttgaaaatccat |
104 |
Q |
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| T |
35293423 |
tgaacacaatcaaaatcaaaaaaattagaaagaaagggagaaaaagttttgaagacctaataggtatctaaatattattatgcaaatgttgaaaatccat |
35293522 |
T |
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| Q |
105 |
ggtaaagaaagctttcaagaaatgatctttatgttgatgagagagtgaaagaagaaattacctgtcctatggccaagataacaggatcagtcataatgag |
204 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293523 |
ggtaaagaaagcattcaagaaatgatctttatgttgatgagagagtgaaagaagaaattacctgtcctatggccaagataacaggatcagtcataatgag |
35293622 |
T |
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| Q |
205 |
acctgagatggggcaacgaaactgtggaggaacaggaagagataaatgatcgaatttacgagagaaagaagcactgcatttcatatccctaagaacagaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293623 |
acctgagatggggcaacgaaactgtggaggaacaggaagagataaatgatcgaatttacgagagaaagaagcactgcatttcatatccctaagaacagaa |
35293722 |
T |
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| Q |
305 |
agagcagtgatagcttcatcagcagcatgcacagtgaagtcatcaccttccactata |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35293723 |
agagcagtgatagcttcatcagcagcatgcacagtgaagtcatcaccttccactata |
35293779 |
T |
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