View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_low_15 (Length: 334)
Name: NF5018_low_15
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 23 - 322
Target Start/End: Original strand, 27686195 - 27686494
Alignment:
| Q |
23 |
agccataaagaataaactagcaaagataaatatgaaaggaaaggccatgaagaaaggtaggtaacttaaattttaagcagaaaacaaaatgatgcttgtg |
122 |
Q |
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| T |
27686195 |
agccataaagaataaactagcaaagagaaatatgaaaggaaaggccatgaagaaaggtaggtaacttaaattttaagcagaaaacaaaatgatgcttgtg |
27686294 |
T |
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| Q |
123 |
tgtataaatgcagggtgtgtgtgagagtgatgggctactcagtgaaaggtgcatatggatgaagagtatggcagtacatattgatagtagtataaatata |
222 |
Q |
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| T |
27686295 |
tgtataaatgcagggtgtgtgtgagagtgatggactactcagtgaaaggtgcatatggatgaagagtatggcagtacatattgatagtagtataaatata |
27686394 |
T |
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| Q |
223 |
gaaaattaatgggtccctctacaatcgacaactatgaaacaccgggaacggcaatgggctaaacgttcaagaccaataagagagatagatgccacatctc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27686395 |
gaaaattaatgggtccctctacaatcgacaactatgaaacaccgggaacggcaatgagctaaacgttcaagaccaataagagagatagaagccacatctc |
27686494 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 322
Target Start/End: Complemental strand, 40053320 - 40053263
Alignment:
| Q |
265 |
cgggaacggcaatgggctaaacgttcaagaccaataagagagatagatgccacatctc |
322 |
Q |
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||||| |||||||| |||||||||||||||||| |||||| |||| |||||||||| |
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| T |
40053320 |
cgggagcggcaatgagctaaacgttcaagaccaccaagagacttagacgccacatctc |
40053263 |
T |
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