View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5018_low_16 (Length: 332)

Name: NF5018_low_16
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5018_low_16
NF5018_low_16
[»] chr7 (4 HSPs)
chr7 (18-330)||(30120252-30120564)
chr7 (22-273)||(30123949-30124202)
chr7 (205-332)||(30131253-30131380)
chr7 (229-332)||(28180518-28180624)
[»] chr5 (2 HSPs)
chr5 (18-332)||(29261072-29261386)
chr5 (106-146)||(29688021-29688061)
[»] chr4 (9 HSPs)
chr4 (106-147)||(48852573-48852614)
chr4 (104-148)||(48875754-48875798)
chr4 (104-147)||(48870450-48870493)
chr4 (104-147)||(48886136-48886179)
chr4 (109-147)||(48898632-48898670)
chr4 (102-147)||(45372193-45372238)
chr4 (106-147)||(49044320-49044361)
chr4 (110-147)||(50672412-50672449)
chr4 (103-147)||(48170704-48170748)
[»] chr2 (2 HSPs)
chr2 (234-332)||(21430104-21430202)
chr2 (209-266)||(21426387-21426440)
[»] scaffold1051 (1 HSPs)
scaffold1051 (221-262)||(2080-2121)
[»] chr8 (2 HSPs)
chr8 (73-147)||(43165169-43165243)
chr8 (291-332)||(43165020-43165061)
[»] chr3 (1 HSPs)
chr3 (110-147)||(47452031-47452068)


Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 18 - 330
Target Start/End: Complemental strand, 30120564 - 30120252
Alignment:
Q  18 catacttgattttatggatcaccaacaacatcctcaaatcggaggttcatgcagggggtttgtgtttttgcactctgacaaaggcttctatctatggaat 117  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30120564 cataattgattttatggatcaccaacaacatccacaaatcggaggttcatgcagggggtttgtgtttttgcactctgacaaaggcttctatctatggaat 30120465  T
Q  118 ccatccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtatggct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  30120464 ccatccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcaatattttaaggtttttgtatggct 30120365  T
Q  218 ttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattaccttggagat 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  30120364 ttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctggtttgattaccttggagat 30120265  T
Q  318 tttctcattgaga 330  Q
    |||||||||||||    
T  30120264 tttctcattgaga 30120252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 22 - 273
Target Start/End: Complemental strand, 30124202 - 30123949
Alignment:
Q  22 cttgattttatggatcaccaacaacatcctcaaatcggaggttcatgcagggggtttgtgttttt-gcactctgacaaaggcttctatctatggaatcca 120  Q
    ||||||||||||  ||||||| | | |||||||||||||||||| || ||||||||||||||||| ||| |||||||||||||||||  |||||||||||    
T  30124202 cttgattttatgcgtcaccaatatcgtcctcaaatcggaggttcgtgtagggggtttgtgttttttgcagtctgacaaaggcttctagttatggaatcca 30124103  T
Q  121 tccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtatggctttg 220  Q
    |||||||||||| || | ||||||||||||||  |||| ||||||| | || | | ||||| || |||||   ||||| |   ||||||||||| |||||    
T  30124102 tccaccggagtctaccagcaaatacctaggtcttctataactattgtattcgatcataataatcccaatcataatattctcgtgtttttgtatgcctttg 30124003  T
Q  221 catacgaa-ccgtcaactgatgattacttggtagttttagggtcctataaatgc 273  Q
    | |||||| |||| |||  ||||||||||||||||||| |||||||| ||||||    
T  30124002 cttacgaacccgttaacatatgattacttggtagttttggggtcctacaaatgc 30123949  T

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Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 205 - 332
Target Start/End: Complemental strand, 30131380 - 30131253
Alignment:
Q  205 tttttgtatggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttga 304  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||| |||||||||       
T  30131380 tttttgtatggcttggcatatgaaccatcaactgatgattacttggtagttttagggtcctatgaatgcgatgatggctatgatcggatatctagttcac 30131281  T
Q  305 ttaccttggagattttctcattgagagc 332  Q
    ||  ||||| ||||||||||||||||||    
T  30131280 ttgacttggggattttctcattgagagc 30131253  T

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Target: chr7; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 229 - 332
Target Start/End: Complemental strand, 28180624 - 28180518
Alignment:
Q  229 ccgtcaactgatgattacttggtagttttagggtcctataaatgc---tataatgactatgatcgggtatctagtttgattaccttggagattttctcat 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||    || ||| || ||||| |||||||||||  |||   || |||||||||||||    
T  28180624 ccgtcaactgatgattacttggtagttttagggtcctataaatgcggtgatgatggctttgatccggtatctagttcaattgaattagagattttctcat 28180525  T
Q  326 tgagagc 332  Q
    |||||||    
T  28180524 tgagagc 28180518  T

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Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 29261072 - 29261386
Alignment:
Q  18 catacttgattttatggatcaccaacaacatcctcaaatcggaggttcatgcagggggtttgtgtttttgcactctgacaaaggcttctatctatggaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  29261072 catacttgattttatggatcaccaacaacatcctcaaatcggaggttcatgcagagggtttgtgtttttgcactctgacaaaggcttctatctatggaat 29261171  T
Q  118 ccatccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtatggct 217  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  29261172 ccatcaaccggagtccacaaacaaatacctagatcacctatgactattggaatcaagcttaatattctcaatcacaatattttaaggtttttctatggct 29261271  T
Q  218 ttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattaccttggagat 317  Q
    ||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||    
T  29261272 ttgcatatgaaccgtcaactgatgattacttcgtagttttaaggtcctataaatgctataatgactatgatcgggtatctagattgattcccttggatat 29261371  T
Q  318 tttctcattgagagc 332  Q
    |||||||||||||||    
T  29261372 tttctcattgagagc 29261386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 29688021 - 29688061
Alignment:
Q  106 tatctatggaatccatccaccggagtccacaaacaaatacc 146  Q
    |||||||||||||||||||||||||| |||| |||||||||    
T  29688021 tatctatggaatccatccaccggagttcacagacaaatacc 29688061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 48852573 - 48852614
Alignment:
Q  106 tatctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  48852573 tatctatggaatccatccaccggagttcacaaacaaatacct 48852614  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 48875754 - 48875798
Alignment:
Q  104 tctatctatggaatccatccaccggagtccacaaacaaataccta 148  Q
    |||| ||||||||||||||||||||| | ||||||||||||||||    
T  48875754 tctacctatggaatccatccaccggatttcacaaacaaataccta 48875798  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 48870450 - 48870493
Alignment:
Q  104 tctatctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    |||| ||||||||||||||||||||| | |||||||||||||||    
T  48870450 tctacctatggaatccatccaccggatttcacaaacaaatacct 48870493  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 48886136 - 48886179
Alignment:
Q  104 tctatctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    |||| ||||||||||||||||||||| | |||||||||||||||    
T  48886136 tctacctatggaatccatccaccggatttcacaaacaaatacct 48886179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 48898632 - 48898670
Alignment:
Q  109 ctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    ||||||||||||||||||||||  |||||||||||||||    
T  48898632 ctatggaatccatccaccggagctcacaaacaaatacct 48898670  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 45372238 - 45372193
Alignment:
Q  102 cttctatctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    |||||||||||||||||||||||| || || || ||||||||||||    
T  45372238 cttctatctatggaatccatccactggtgttcagaaacaaatacct 45372193  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 49044361 - 49044320
Alignment:
Q  106 tatctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    ||||||||||||||||||||  |||| |||||||||||||||    
T  49044361 tatctatggaatccatccactagagttcacaaacaaatacct 49044320  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Original strand, 50672412 - 50672449
Alignment:
Q  110 tatggaatccatccaccggagtccacaaacaaatacct 147  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  50672412 tatggaatccatccacaggagttcacaaacaaatacct 50672449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 48170748 - 48170704
Alignment:
Q  103 ttctatctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    ||||| |||||||||||||||||| |||| || ||||||||||||    
T  48170748 ttctacctatggaatccatccacccgagttcataaacaaatacct 48170704  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 21430104 - 21430202
Alignment:
Q  234 aactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattaccttggagattttctcattgagagc 332  Q
    |||||||||||||||||||||||| | ||||||  ||| | ||||| ||| |||   |||||||||||  |||  ||| ||||||||||||||||||||    
T  21430104 aactgatgattacttggtagttttcgagtcctacgaattcaataatcactctgagtcggtatctagttcaattgacttagagattttctcattgagagc 21430202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 21426387 - 21426440
Alignment:
Q  209 tgtatggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtccta 266  Q
    |||||| ||| ||||||||||||||||    |||||||||||||||||| ||||||||    
T  21426387 tgtatgccttggcatacgaaccgtcaa----tgattacttggtagttttggggtccta 21426440  T

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Target: scaffold1051 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 2121 - 2080
Alignment:
Q  221 catacgaaccgtcaactgatgattacttggtagttttagggt 262  Q
    |||| |||||||||||||||||||||||||||||||| ||||    
T  2121 catatgaaccgtcaactgatgattacttggtagttttggggt 2080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 43165243 - 43165169
Alignment:
Q  73 gggtttgtgtttttgcactctgacaaaggcttctatctatggaatccatccaccggagtccacaaacaaatacct 147  Q
    |||||| |||||||  ||||| ||| || ||||||  |||||||||||||||| ||  |||||||||||||||||    
T  43165243 gggtttctgtttttaaactcttacagagacttctacatatggaatccatccacaggcatccacaaacaaatacct 43165169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Complemental strand, 43165061 - 43165020
Alignment:
Q  291 ggtatctagtttgattaccttggagattttctcattgagagc 332  Q
    ||||||||||| ||||  ||||||||||||||||||||||||    
T  43165061 ggtatctagttcgattgacttggagattttctcattgagagc 43165020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 147
Target Start/End: Complemental strand, 47452068 - 47452031
Alignment:
Q  110 tatggaatccatccaccggagtccacaaacaaatacct 147  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  47452068 tatggaatccatccactggagttcacaaacaaatacct 47452031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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