View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_low_21 (Length: 250)
Name: NF5018_low_21
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_21 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 29239024 - 29238955
Alignment:
| Q |
181 |
taattactaccaccaccgaggccaaggctacctaattcccgtccctttcttatccctaaaggctaaagtt |
250 |
Q |
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| T |
29239024 |
taattactaccaccaccaaggccaaggctacctaattcccgtccctttcttatccctaaaggctaaagtt |
29238955 |
T |
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Target: chr3; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29239159 - 29239103
Alignment:
| Q |
1 |
gaaaatttaaagagaagaggatcaacaatcaagcaatatatattactttttatattc |
57 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
29239159 |
gaaaacttaaagagaagagggtcaacaatcaagcaatatatattactttttatattc |
29239103 |
T |
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