View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5018_low_22 (Length: 247)
Name: NF5018_low_22
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_22 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 50538885 - 50538673
Alignment:
| Q |
17 |
ttttccatcatcatttaagttaagtaaccttaaattactagctactaattaatatcagatactaattgatatacaagtcaaactaatcaaattaattaat |
116 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50538885 |
ttttccatcatcatt-aagttaaataaccttaaattaccagctactaattaatatcagatactaattgatatacaagtcaaactaatcaaattaattaat |
50538787 |
T |
|
| Q |
117 |
accataaataagtatcattaaccaaacatacatcttcagattcatattcattctttggctccagctcctcccatctccattggagcaatcatatcctgaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50538786 |
accataaataagtatcattaaccaaacatacatcttcagcttcatattcattctttggctccagctcctcccatctccattggagcaatcatatcctgaa |
50538687 |
T |
|
| Q |
217 |
gaagcccattgttc |
230 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
50538686 |
gaagcccattgttc |
50538673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 66 - 230
Target Start/End: Original strand, 33318072 - 33318236
Alignment:
| Q |
66 |
taatatcagatactaattgatatacaagtcaaactaatcaaattaattaataccataaataagtatcattaaccaaacatacatcttcagattcatattc |
165 |
Q |
| |
|
||||| |||||| ||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||| |
|
|
| T |
33318072 |
taataccagatattaaatgatatacaaatcaaactaatcgaattaattaataccataaataagtatcattaacccaacatatatcttcagcttcatattc |
33318171 |
T |
|
| Q |
166 |
attctttggctccagctcctcccatctccattggagcaatcatatcctgaagaagcccattgttc |
230 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33318172 |
attctttggcttcagctcctcccatctccattggagcaatcatatcctgaagaagtccattgttc |
33318236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University