View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_low_29 (Length: 227)
Name: NF5018_low_29
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_29 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 50968313 - 50968087
Alignment:
| Q |
1 |
aactaaaatttactccttaaaatcatcaattgttgtatttgagttaaatttttcagcgatatcatcttctaaatcatgtaatctataagaaaatcatctt |
100 |
Q |
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| T |
50968313 |
aactaaaatttactccttaaaatcatcaattgttgtatttgagttaaatttttcagcgatatcatcttctaaataatgtaatctataagaaaatcatctt |
50968214 |
T |
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| Q |
101 |
caatcttcttcggtagccttgtttttatagattcttataaattaatcccatgcttgtttttctctctaataaaaagttaacattctaattctgttatggt |
200 |
Q |
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| T |
50968213 |
caatcttcttcggtagccttgtttttatagattcttataaattaatcccatgcttgtttttctctctaataaaaagttaacattctaattctgttatggt |
50968114 |
T |
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| Q |
201 |
ttccatgataaatatttttctttaagt |
227 |
Q |
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| T |
50968113 |
ttccatgataaatatttttctttaagt |
50968087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 50970275 - 50970193
Alignment:
| Q |
67 |
ttctaaatcatgtaatctataagaaaatcatcttcaatcttcttcggtagccttgtttttatagattcttataaattaatccc |
149 |
Q |
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| T |
50970275 |
ttctaaatcatgtaatctatgagaaaatcatcttcaatctgcttatgtagccttgtttttatagattctaataaatcaatccc |
50970193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 163 - 226
Target Start/End: Original strand, 27932813 - 27932876
Alignment:
| Q |
163 |
tctctaataaaaagttaacattctaattctgttatggtttccatgataaatatttttctttaag |
226 |
Q |
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|||| |||||||| |||||||| |||||||||||||||||||||||||| | ||||||| |||| |
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| T |
27932813 |
tctccaataaaaaattaacattttaattctgttatggtttccatgataactgtttttctctaag |
27932876 |
T |
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