View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_low_3 (Length: 515)
Name: NF5018_low_3
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_3 |
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| [»] chr1 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 11 - 515
Target Start/End: Original strand, 35093849 - 35094324
Alignment:
| Q |
11 |
cacagaatcatttagaagtaaacactatatctgggcatggttttatgt-aattgttaaattattaaatgaagaaaagggaaagaaaactgagaaactgag |
109 |
Q |
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| T |
35093849 |
cacagaatcatttagaagtaaacactatatctgggcatggttttatgttaattgttaaattattaaatgaagaaa-------------------actgag |
35093929 |
T |
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| Q |
110 |
ggaaatgacaactgaagatctcatccctgatctccttatccaccacccttgaggcaaagatgttaactctactcctttatctgatctgttaatgatggca |
209 |
Q |
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| T |
35093930 |
ggaaatgacaactgaagatctc------------cttatccaccacccttgaggcaaagatgttaactctactcctttatctgatctgttaatgatggca |
35094017 |
T |
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| Q |
210 |
taatttgttctgcagattcaggcagtttccttacaagggtacatttttactaaactgcttatattgtcnnnnnnn-gggttttctagttgtagatactcc |
308 |
Q |
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| T |
35094018 |
taatttgttctgcagattcaggcagtttccttacatgggtacatttttactaaactgcttatattgtctcttttttgggttttctagttgtagatactcc |
35094117 |
T |
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| Q |
309 |
ttcaacagcacctatctgtgtaaattccacaccagatttcagtgagcaccatgcttctacatcgacgggtgactggggggaactagagaatggaattgac |
408 |
Q |
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| T |
35094118 |
ttcaacagcacctatctgtgtaaattccacaccagatttcagtgagcaccatgcttctacatcgacagatgactggggggaactagagaatggaattgac |
35094217 |
T |
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| Q |
409 |
gaggagcctgaaaacgacaagggtgtgtgggaagatctagaaccacttgaagagacaaagccaactccagctcttactaacattcaagcagctcaaaggc |
508 |
Q |
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| T |
35094218 |
gaggagcctgaaaacgacaagggtgcgtgggaagatctagaaccacttgaagagacaaagccaactccagctcttactaacattcaagcagctcaaaggc |
35094317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 290 - 515
Target Start/End: Original strand, 32586580 - 32586814
Alignment:
| Q |
290 |
ttctagttgtagatactccttcaacagcacctatctgtgtaaattccacaccagatttcagtgagcaccatgc---------ttctacatcgacgggtga |
380 |
Q |
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| T |
32586580 |
ttctagttgcagacactccttcaacagcacctatccgtgtaaattccacaccagatttcactgaccaccatgcccctacatctcctacatcaacggatgg |
32586679 |
T |
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| Q |
381 |
ctggggggaactagagaatggaattgacgaggagcctgaaaacgacaagggtgtgtgggaagatctagaaccacttgaagagacaaagccaactccagct |
480 |
Q |
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| T |
32586680 |
ctggggggagctagagaatggaattgacgaggaacctgaaaatgacaaggatgggtgggatgatttagaaccacttgaagaaacaaagccgactccagct |
32586779 |
T |
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| Q |
481 |
cttactaacattcaagcagctcaaaggccgccagt |
515 |
Q |
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| T |
32586780 |
cttactaacattcaagcagctcaaaggcggccagt |
32586814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 67 - 222
Target Start/End: Original strand, 32586357 - 32586517
Alignment:
| Q |
67 |
aattattaaatgaagaaaag----ggaaagaaaactgagaaactgagggaaatgacaactgaagatctcatccc-tgatctccttatccaccacccttga |
161 |
Q |
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| T |
32586357 |
aattattaaatgaagaaaagtaaagggaagaaaactgagaaactgagggaagtggcagctgaaaatcttatcccctcatctccctatccacaactcttga |
32586456 |
T |
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| Q |
162 |
ggcaaagatgttaactctactcctttatctgatctgttaatgatggcataatttgttctgc |
222 |
Q |
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| T |
32586457 |
ggcaaatatgttgattctactctttcatcttatctgttaacactgccataatttgttctgc |
32586517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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