View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5018_low_32 (Length: 203)
Name: NF5018_low_32
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 77; Significance: 6e-36; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 29469540 - 29469456
Alignment:
| Q |
19 |
ctttgaatgtaacaaatgattttatcattttataatttatagagttggtcttctccttaca-caacaaaataacttttagccctt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29469540 |
ctttgaatgtaacaaatgattttatcattttataatttatagagttggtcttctccttacaccaacaaaataacttttagccctt |
29469456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 29481417 - 29481336
Alignment:
| Q |
19 |
ctttgaatgtaacaaatgattttatcattttataatttatagagttggtcttctccttaca-caacaaaataacttttagcc |
99 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||| |
|
|
| T |
29481417 |
ctttgcatgtaacaaatgattttatcattttataatttatagagttggcattctccttacaccaacaaaatagtttttagcc |
29481336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 29469418 - 29469369
Alignment:
| Q |
138 |
tcataaaattagaataattattgaatctctcttaactacattaaagtatt |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29469418 |
tcataaaattagaataattattgaatctctcttaactacattaaagtatt |
29469369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 29481300 - 29481247
Alignment:
| Q |
134 |
cccttcataaaattagaataattattgaatctctcttaactacattaaagtatt |
187 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||| |||| |
|
|
| T |
29481300 |
cccttcataaaattagaataattatggaatctctctcaactacattaaattatt |
29481247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University