View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5018_low_6 (Length: 467)

Name: NF5018_low_6
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5018_low_6
NF5018_low_6
[»] chr2 (13 HSPs)
chr2 (160-322)||(27645227-27645389)
chr2 (1-98)||(27645074-27645166)
chr2 (250-322)||(27645499-27645572)
chr2 (399-452)||(27645499-27645552)
chr2 (254-322)||(27554426-27554495)
chr2 (255-322)||(27554734-27554802)
chr2 (403-452)||(27554446-27554495)
chr2 (406-452)||(27554300-27554346)
chr2 (254-322)||(27554582-27554651)
chr2 (403-452)||(27554602-27554651)
chr2 (397-452)||(27645314-27645369)
chr2 (345-388)||(27645419-27645461)
chr2 (404-452)||(27554754-27554802)


Alignment Details
Target: chr2 (Bit Score: 96; Significance: 7e-47; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 160 - 322
Target Start/End: Original strand, 27645227 - 27645389
Alignment:
Q  160 tcagtttatctgtggttaatccaaaatttggtccaaaaatattttttgcgtgtgaattcttaccccttaagatattcctttnnnnnnnnngattttcatt 259  Q
    |||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||| ||||         |||||| |||    
T  27645227 tcagtttatctgtggttaattcaaaattcggttcaaaaatattttttgcgtgtgaattcttaccccttaaaatatttcttt-aaaaaaaagatttttatt 27645325  T
Q  260 aaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 322  Q
     ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27645326 gaatgaaaaattaccatatacattatgaatacctttcgtatgattttgttcaaaggaggaaaag 27645389  T

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Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 27645074 - 27645166
Alignment:
Q  1 tttatagaccaaaaaggaacgggccacgcggtgtctcttctcttccttaacagagaagattttaaacccctaaattgatggacaaaattaggatgggt 98  Q
    |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  27645074 tttatagaccaaaaaggaacgggccacgcggtgtctc-----ttccttaacagagaagattttaaacccctaaattgatgaacaaaattaggatgggt 27645166  T

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Target: chr2; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 27645499 - 27645572
Alignment:
Q  250 gattttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 322  Q
    |||||||||||||||||||||||||||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgattttgttcaaaggaggaaaag 27645572  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 452
Target Start/End: Original strand, 27645499 - 27645552
Alignment:
Q  399 gattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 452  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27645499 gattttcattaaatgaaaaattaccatatacatttcgaataccttttgtatgat 27645552  T

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Target: chr2; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 27554495 - 27554426
Alignment:
Q  254 ttcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 322  Q
    ||||||||||||||||||| |||| |||||  |||||||||| |||||||||||||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatgattttgttcaaaggaggaaaag 27554426  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 27554802 - 27554734
Alignment:
Q  255 tcattaaatgaaaaattaccata-acattatgaatacctttcgtatgattttgttcaaaggaggaaaag 322  Q
    ||||||||| |||||||| |||| |||||| |||||| ||| |||||||||||||||||||||||||||    
T  27554802 tcattaaataaaaaattatcatatacattacgaatactttttgtatgattttgttcaaaggaggaaaag 27554734  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 27554495 - 27554446
Alignment:
Q  403 ttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 452  Q
    |||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  27554495 ttcattaaatgaaaaattaacatatacatttggaataccttttgtatgat 27554446  T

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Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 406 - 452
Target Start/End: Complemental strand, 27554346 - 27554300
Alignment:
Q  406 attaaatgaaaaactaccatatacatttcgaataccttttgtatgat 452  Q
    ||||||||||||| ||||| ||||||||| |||||||||||||||||    
T  27554346 attaaatgaaaaattaccaaatacatttcaaataccttttgtatgat 27554300  T

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Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 27554651 - 27554582
Alignment:
Q  254 ttcattaaatgaaaaattaccataac-attatgaatacctttcgtatgattttgttcaaaggaggaaaag 322  Q
    ||||||||||||||||||| ||||   |||  |||||||||| ||||||||||||| |||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatgattttgtttaaaggaggaaaag 27554582  T

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Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 27554651 - 27554602
Alignment:
Q  403 ttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 452  Q
    |||||||||||||||| || |||||  |||||||||||||||||||||||    
T  27554651 ttcattaaatgaaaaattatcatatttatttcgaataccttttgtatgat 27554602  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 452
Target Start/End: Original strand, 27645314 - 27645369
Alignment:
Q  397 aagattttcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 452  Q
    |||||||| ||| ||||||||| |||||||||||||  |||||||||| |||||||    
T  27645314 aagatttttattgaatgaaaaattaccatatacattatgaatacctttcgtatgat 27645369  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 388
Target Start/End: Original strand, 27645419 - 27645461
Alignment:
Q  345 gtgtgtgaattctttactccttaagatatttatttaatgatagt 388  Q
    |||||||||||||| |||| ||||||||||||||||||||||||    
T  27645419 gtgtgtgaattctt-actctttaagatatttatttaatgatagt 27645461  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 452
Target Start/End: Complemental strand, 27554802 - 27554754
Alignment:
Q  404 tcattaaatgaaaaactaccatatacatttcgaataccttttgtatgat 452  Q
    ||||||||| ||||| || |||||||||| ||||||| |||||||||||    
T  27554802 tcattaaataaaaaattatcatatacattacgaatactttttgtatgat 27554754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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