View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5018_low_7 (Length: 433)
Name: NF5018_low_7
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 119 - 397
Target Start/End: Complemental strand, 23255452 - 23255176
Alignment:
| Q |
119 |
ggcaacatagaactcatacacaatagaacttgctaaacatttaccagttcaaatattatctttctgctaactttaagcatgataggttctaaaacaataa |
218 |
Q |
| |
|
||||||| | |||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| | |
|
|
| T |
23255452 |
ggcaacacaaaactcatacacaattgaacttgctaaacacttaccaattcaaatattatctttctgctaactttaagcaggataggttctaaaacaatga |
23255353 |
T |
|
| Q |
219 |
gacctgtaattgtcgctgttccatacgtggcagcatgatgtaatagaactattacacgacacagcggtacattacgagagaattaaacatctcaccactg |
318 |
Q |
| |
|
| |||||||||| | |||||||| |||||||||| || |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| |
|
|
| T |
23255352 |
aat-tgtaattgtcaccgttccatatgtggcagcatagtgaaatagaactattacacgacacaacggtacattacta-agaattaaacatctcaccactg |
23255255 |
T |
|
| Q |
319 |
tgagagatcttgacgacttgtcctttttccagtccatagtagctagcaatggcatcagttcttagcatgtgaggtagct |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23255254 |
tgagagatcttgacgacttgtcctttttccagtccatagtagctagcaatggcatcagttcttagcatgtgaggtagct |
23255176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 9 - 157
Target Start/End: Original strand, 4702455 - 4702614
Alignment:
| Q |
9 |
gattatactggtgaaggtgaagttgaaggtaaaatatataaaaagcttgaagtgac---ctttcaaagaa--------aataggattttactgcttatca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||||||||||| |
|
|
| T |
4702455 |
gattatactggtgaaggtgaagttgaaggtaaaatatataaaaagcttgaaggaaaagacttacatagattgagaaagaataggattttactgcttatca |
4702554 |
T |
|
| Q |
98 |
aagaaaattcaaaaccatgtaggcaacatagaactcatacacaatagaacttgctaaaca |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4702555 |
aagaaaattcaaaaccatgtaggcaacatagaactcatacacaatagaacttgctaaaca |
4702614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 415
Target Start/End: Original strand, 4704630 - 4704722
Alignment:
| Q |
325 |
atcttgacgacttgtcctttttccagtccatagtagctagcaat--ggcatcagttcttagcatgtgaggtagctaaaaacagcaacaaaata |
415 |
Q |
| |
|
||||||| |||||||||| ||||||| || |||||||||| || ||||||||||||||||||||||| ||| | |||| |||||||||||| |
|
|
| T |
4704630 |
atcttgaagacttgtcctctttccagctcaaagtagctagctatatggcatcagttcttagcatgtgagatagttgaaaagagcaacaaaata |
4704722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 119 - 251
Target Start/End: Original strand, 4704448 - 4704578
Alignment:
| Q |
119 |
ggcaacatagaactcatacacaatagaacttgctaaacatttaccagttcaaatattatctttctgctaactttaagcatgataggttctaaaacaataa |
218 |
Q |
| |
|
||||||| ||| | ||||||||||||||||||| ||||| | | || | ||| ||| |||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
4704448 |
ggcaacacagagcacatacacaatagaacttgc-aaacactaaacaatccaattataatctttttgctaactataagcatgatagattctaaaacaataa |
4704546 |
T |
|
| Q |
219 |
gacctgtaattgtcgctgttccatacgtggcag |
251 |
Q |
| |
|
| || | ||||| ||||||||||| |||||| |
|
|
| T |
4704547 |
-aattggacttgtcactgttccatacatggcag |
4704578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University