View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5018_low_8 (Length: 402)
Name: NF5018_low_8
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5018_low_8 |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 36365211 - 36365605
Alignment:
| Q |
1 |
ttcggattatataattagaaaaggtttttgactattttggatgatagaattgaaatttgttgggaacgtataaaaagaaaaatctgcccttaaatcagat |
100 |
Q |
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| T |
36365211 |
ttcggattatataattagaaaaggtttttgactattttggatgatagaattgaaatttgttcggaacatataaaaagaaaaatctgcccttaaatcagat |
36365310 |
T |
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| Q |
101 |
tctatcctccaattcccccatttcccatttataaaagttaattgacttgacaacaacacacttaat---aatgatgggcaatgaggactaaggaacccac |
197 |
Q |
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| T |
36365311 |
tctatcctccaattcccccatttcccatttataaaagttaattgacttgacaacaacacacttaataataatgatgagcaatgaggactaaggaacccac |
36365410 |
T |
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| Q |
198 |
ggctcagtgagttgaaataaaacaagtaatttctttttacattgttacaaagcttatttttaattttgaaccagtcgatgtggactctagaaatacaata |
297 |
Q |
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| T |
36365411 |
ggctcagtgagttgaaataaaacaagtaatttatttttacattgttacaaagcttatttttaattttgaaccagtcgatgtgggctctagaaatacaata |
36365510 |
T |
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| Q |
298 |
ccaaacccttctgtttcttttgttctctttttctcacaaatgtgtaaagatcatgtgacacatcactatttccaatccaaatttcaatgcctttg |
392 |
Q |
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| T |
36365511 |
ccaaacccttctgtttcttttgttctctttttctcacaaatgtgtaaagatcatgtgacacatcactatttccaatccaaatttcattgcctttg |
36365605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 36379674 - 36379725
Alignment:
| Q |
271 |
gtcgatgtggactctagaaatacaataccaaacccttctgtttcttttgttc |
322 |
Q |
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| T |
36379674 |
gtcgatgtgggctctagaaatacaataccaaacccttctgtttcttttgttc |
36379725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 322
Target Start/End: Original strand, 86534 - 86585
Alignment:
| Q |
271 |
gtcgatgtggactctagaaatacaataccaaacccttctgtttcttttgttc |
322 |
Q |
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| T |
86534 |
gtcgatgtgggctctagaaatacaataccaaacccttctgtttcttttgttc |
86585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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