View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5018_low_9 (Length: 388)

Name: NF5018_low_9
Description: NF5018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5018_low_9
NF5018_low_9
[»] chr4 (3 HSPs)
chr4 (14-373)||(26647135-26647518)
chr4 (237-373)||(13669607-13669745)
chr4 (237-373)||(13682464-13682602)
[»] chr8 (3 HSPs)
chr8 (112-373)||(37001978-37002241)
chr8 (140-373)||(36992261-36992500)
chr8 (14-113)||(37002274-37002373)
[»] chr7 (2 HSPs)
chr7 (210-283)||(8596984-8597057)
chr7 (306-360)||(8596901-8596959)
[»] chr3 (2 HSPs)
chr3 (26-110)||(27442791-27442874)
chr3 (26-110)||(27445947-27446030)
[»] chr1 (1 HSPs)
chr1 (26-110)||(12796262-12796345)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 26647518 - 26647135
Alignment:
Q  14 gagatgaaaaccactaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaataat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26647518 gagatgaaaaccactaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaataat 26647419  T
Q  114 ---------------------atagctaagtaaatcagtttcaacagtacagatgttgtacaaacgttgtaggagtctaagtttgtatttgatgcttttg 192  Q
                         |||||||||||||||| ||||||||||||| ||||||||| ||||||| |||||||||||||||||||| |||||||||    
T  26647418 taattacaggataggaacaatatagctaagtaaatca-tttcaacagtacaaatgttgtaccaacgttgcaggagtctaagtttgtattttatgcttttg 26647320  T
Q  193 tagaagtctatgttgtacaaatgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatattttgttattc----nnnnn 288  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||             
T  26647319 taggagtctatgttgtacaaatgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatgttttgttattcaacaaaaaa 26647220  T
Q  289 nnnnnncgggcgtcacgctccctcaagttttttgtttgctaattaactaacatgatttttcaatatttgcagattttgtactttc 373  Q
          |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26647219 aaaaaacgggcgtcacactccctcaagttttttgtctgctaattaactaacatgatttttcaatatttgcagattttgtactttc 26647135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 13669607 - 13669745
Alignment:
Q  237 tcttaatttatgagaaatgaaattttgaaacccatattttgttattcnnnnnnnnnnncgggcgtcacgctc--cctcaagttttttgtttgctaattaa 334  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||             || ||||  |||  |||||| |||||||||||||||||||    
T  13669607 tcttaatttatgagaaatgaaattttgaaacccatgttctgttattcaacaaaaaacaatggtgtcaaactctacctcaaattttttgtttgctaattaa 13669706  T
Q  335 ctaacatgatttttcaatatttgcagattttgtactttc 373  Q
    |||| ||||||||||||||||||||| || ||| |||||    
T  13669707 ctaatatgatttttcaatatttgcagcttctgtgctttc 13669745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 373
Target Start/End: Original strand, 13682464 - 13682602
Alignment:
Q  237 tcttaatttatgagaaatgaaattttgaaacccatattttgttattcnnnnnnnnnnncgggcgtcacgctc--cctcaagttttttgtttgctaattaa 334  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||             || ||||  |||  |||||| |||||||||||||||||||    
T  13682464 tcttaatttatgagaaatgaaattttgaaacccatgttctgttattcaacaaaaaacaatggtgtcaaactctacctcaaattttttgtttgctaattaa 13682563  T
Q  335 ctaacatgatttttcaatatttgcagattttgtactttc 373  Q
    |||| ||||||||||||||||||||| || ||| |||||    
T  13682564 ctaatatgatttttcaatatttgcagcttctgtgctttc 13682602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 112 - 373
Target Start/End: Complemental strand, 37002241 - 37001978
Alignment:
Q  112 atatagctaagtaaatcagtttcaacagtacagatgttgtacaaacgttgtaggagtctaagtttgtatttgatgcttttgtagaagtctatgttgtaca 211  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |    
T  37002241 atatagctaagtaaatcagtttcaacagtacaaatgttgtacaaacgttgcaggagtctaagtttgtatttgatgcttttgtaggagtctatgttgtata 37002142  T
Q  212 aatgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatattttgttattc--nnnnnnnnnnncgggcgtcacgctcc 309  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||             ||| |||||| ||||    
T  37002141 aatgttgtgaatttaaatgttatactcttaatttatgagaaatgaaattttgaaacccatgttttgttattcaacaaaaaaaaaacggtcgtcacactcc 37002042  T
Q  310 ctcaagttttttgtttgctaattaactaacatgatttttcaatatttgcagattttgtactttc 373  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  37002041 ctcaaattttttgtttgctaattaactaatatgatttttcaatatttgcagattctgtactttc 37001978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 140 - 373
Target Start/End: Complemental strand, 36992500 - 36992261
Alignment:
Q  140 tacagatgttgtacaaacgttgtaggagtctaagtttgtatttgatgcttttgtagaagtctatgttgtacaaatgttgtgaatttaaatgtgatattct 239  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  36992500 tacaaatgttgtacaaacgttgcaggagtctaagtttgtatttgatgcttttgtaggagtctatgttgtacaaatgttgtgaatttaaatgtgatactct 36992401  T
Q  240 taatttatgagaaatgaaattttgaaacccatattttgttatt--------cnnnnnnnnnnncgggcgtcacgctccctcaagttttttgtttgctaat 331  Q
    |||||||||||||||||||||||||||||||| ||||||||||                    |||||||||| ||  |||||  |||||||||||||||    
T  36992400 taatttatgagaaatgaaattttgaaacccatgttttgttattaaaaaaaaaaaaaaaaaaatcgggcgtcacact--ctcaaactttttgtttgctaat 36992303  T
Q  332 taactaacatgatttttcaatatttgcagattttgtactttc 373  Q
    ||||||| |||||||||||||||||||||||| |||||||||    
T  36992302 taactaatatgatttttcaatatttgcagattctgtactttc 36992261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 37002373 - 37002274
Alignment:
Q  14 gagatgaaaaccactaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaataat 113  Q
    ||||||||||| |||||||||||||||| || | ||| ||| |||||||||||||  ||||||||||||||| | ||||| ||| | |||||||||||||    
T  37002373 gagatgaaaacaactaaataaaatgactacactaacttaaatgtgaattgtggaaacactaagtcaattccattagcactccctaacaaataggaataat 37002274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 283
Target Start/End: Complemental strand, 8597057 - 8596984
Alignment:
Q  210 caaatgttgtgaatttaaatgtgatattcttaatttatgagaaatgaaattttgaaacccatattttgttattc 283  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||    
T  8597057 caaatgttgtgaatttaaatgtgatactcttaatttatgagaaatgaaattttggaacccatgttttgttattc 8596984  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 360
Target Start/End: Complemental strand, 8596959 - 8596901
Alignment:
Q  306 ctccctcaagttttttgtttgctaattaactaac----atgatttttcaatatttgcag 360  Q
    |||||| || |||||||||||||||||||||||     |||||||||||||||||||||    
T  8596959 ctccctaaaattttttgtttgctaattaactaattaatatgatttttcaatatttgcag 8596901  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 27442874 - 27442791
Alignment:
Q  26 actaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaat 110  Q
    |||||| |||||||||||| | |||||| ||||||| ||||||  ||||||||||| |||||  | |||||| | ||||||||||    
T  27442874 actaaacaaaatgactccactaactaaa-cgtgaatagtggaacaactaagtcaatcccactatcccttcctaacaaataggaat 27442791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 27446030 - 27445947
Alignment:
Q  26 actaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaat 110  Q
    |||||| |||||||||||| | |||||| ||||||| ||||||  ||||||||||| |||||  | |||||| | ||||||||||    
T  27446030 actaaacaaaatgactccactaactaaa-cgtgaatagtggaacaactaagtcaatcccactatcccttcctaacaaataggaat 27445947  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 12796345 - 12796262
Alignment:
Q  26 actaaataaaatgactccattgactaaaacgtgaattgtggaaggactaagtcaattccactggcacttccttagaaataggaat 110  Q
    |||||| |||||||||||| | |||||| ||||||| ||||||  ||||||||||| |||||  | |||||| | ||||||||||    
T  12796345 actaaacaaaatgactccactaactaaa-cgtgaatagtggaacaactaagtcaatcccactatcccttcctaacaaataggaat 12796262  T

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