View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019-Insertion-1 (Length: 968)
Name: NF5019-Insertion-1
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 485; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 227 - 812
Target Start/End: Complemental strand, 9696489 - 9695905
Alignment:
| Q |
227 |
actaatcccgtttagtttattagtagcacgagttacctacctagatatttttataaacttgtagctggtgctatatatagactcccatttacattccagt |
326 |
Q |
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| T |
9696489 |
actaatcccgtttagtttattagttgcacgagttacctacctagatatttttataaacttgtagctggtgctatatatagactctcatttacattccagt |
9696390 |
T |
|
| Q |
327 |
gaatcaactccaatttatcttctttaattcaagattacttgtccttatgnnnnnnnnnnnnnnncttgaatgttggccaaagtttgtattctagtataga |
426 |
Q |
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| T |
9696389 |
gaatcaactccaatttatcttctttaattcaagattacttgtccttatgaaaaaatacaaaaaacttgaatgttggccaaagcttgtattctagtataga |
9696290 |
T |
|
| Q |
427 |
atataatgaagaaaaaataaatacctgcgagtttcaactttcaagtaactacgtgtttggatatataagcacgatgcaacatacaacatagcttcacgtg |
526 |
Q |
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| T |
9696289 |
atataatgaagaaaaaataaatacctgcgagtttcaactttcaagtaactacgtgtttggatatataagcacgatgcaacatataacataacttcac-tg |
9696191 |
T |
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| Q |
527 |
aataacagcattcaattggtagaagataatcaaaagaatgtaccataacaaactaagtctgtattaataataaaggtgggatttaagtacagatcatgaa |
626 |
Q |
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| T |
9696190 |
aataacagcattcaattggtagaagataatcaacagaatgtaccataacaaactgagtctgtattaataataaaggtgggatttaagtacagatcatgaa |
9696091 |
T |
|
| Q |
627 |
gctgaatctacacttaaactatgcgctaatataaacctaaaaactgtttgttcatcaaaaaacagctttggatctaaaaagtttcccaattacattccaa |
726 |
Q |
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| T |
9696090 |
gctgaatctacacttaaactatgcgctaatataaacctaacaactgtttgttcatcgcaaaacagctttggatctaaaaagtttcccaattacattccaa |
9695991 |
T |
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| Q |
727 |
cctataataatgaaaattattctattgcagttactcctacgcttcttccttcagcaccaccaactttactcctcatcctcctcctg |
812 |
Q |
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| T |
9695990 |
cctataataatgaaaattattctattgcagttaatcctacgcttcttccttcagcaccaccaaccttactcctcatcctcctcctg |
9695905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 7 - 224
Target Start/End: Complemental strand, 9697063 - 9696846
Alignment:
| Q |
7 |
attctccaagcctcttaggatgctttcacacttttatgctgagatctaaggagcaatccacactgctagacccaactttggagcagaaacttaaatatta |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9697063 |
attctccaagcctcttaggatgctttcacacttttatgctgagaactaaggagcaatccacactgctagacccaactttggagcagaaacttaaacatta |
9696964 |
T |
|
| Q |
107 |
gcctcaaaccacatgtgaatttgttgtggctctgctatgtgtagttgctaatttgtgtatcacttgtacagagcaattggtactatattgtagcaaagaa |
206 |
Q |
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| T |
9696963 |
gcctcaaaccacatgtgaatttgttgtggctctgctatgtgtagttgctaatttgtgtatcacttgtacagagcaattggtactatattgtagcaaagaa |
9696864 |
T |
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| Q |
207 |
actacccttcatatagat |
224 |
Q |
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| T |
9696863 |
actacccttcatatagat |
9696846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 932 - 962
Target Start/End: Complemental strand, 9695788 - 9695758
Alignment:
| Q |
932 |
cagacttggacttctcagatccttcttcctc |
962 |
Q |
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| T |
9695788 |
cagacttggacttctcagatccttcttcctc |
9695758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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