View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019-Insertion-10 (Length: 382)
Name: NF5019-Insertion-10
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019-Insertion-10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 8 - 382
Target Start/End: Original strand, 3852637 - 3853011
Alignment:
| Q |
8 |
ttcttctttgacagcaacattgatcttccatttatctcttgatagcaacatgagggttatagcagcttcttcttcaggggcaaagttgaaaagtgaagta |
107 |
Q |
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| T |
3852637 |
ttcttctttgacagcaacattgatcttccatttatctcttgatagcatcatgagggttatagcagcttcttcttcaggggaaaagttgaaaagtgaagta |
3852736 |
T |
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| Q |
108 |
acaggttctggttcagcttctgttagtggtgaatgtgaatttgttaaagtctgtttaagcttcttttgtactgagttttggccaaaggtgagttttcttt |
207 |
Q |
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| T |
3852737 |
acaggttctggttcagcttctgttagtggtgaatgtgaatttgttaaagtctgtttaagcttcttttgtactgagttttggccaaaggtgagttttcttt |
3852836 |
T |
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| Q |
208 |
tttgagttgggttctttgactcggtttcactctctctgtcatggacaatagtttctgtagttgagaaataaaacttgggatctgaaagtttgaaacnnnn |
307 |
Q |
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| T |
3852837 |
tttgagttgggttctttgactcggtttcactctctctgtcatgaacaatagtttctgtagttgagaaataaaacttgggatctgaaagtttgaaactttt |
3852936 |
T |
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| Q |
308 |
nnngggattttctctcaacctatacattagactcttttcatttgagtctctttgttctactgtttgttggttttg |
382 |
Q |
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| T |
3852937 |
tttgggattttctctcaacctatacattagactcttttcatttgagtctctctgttctactgtttgttggttttg |
3853011 |
T |
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