View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5019-Insertion-2 (Length: 912)

Name: NF5019-Insertion-2
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5019-Insertion-2
NF5019-Insertion-2
[»] chr2 (18 HSPs)
chr2 (8-912)||(39492537-39493429)
chr2 (273-749)||(39131237-39131712)
chr2 (286-722)||(39469057-39469490)
chr2 (265-823)||(39125230-39125804)
chr2 (264-510)||(39188196-39188443)
chr2 (264-653)||(39145113-39145483)
chr2 (401-713)||(39424947-39425253)
chr2 (14-92)||(39425439-39425517)
chr2 (9-112)||(39144789-39144892)
chr2 (412-510)||(39372297-39372395)
chr2 (598-660)||(39372498-39372560)
chr2 (9-93)||(39188659-39188743)
chr2 (418-510)||(39224818-39224910)
chr2 (730-837)||(39470851-39470958)
chr2 (598-638)||(39180008-39180048)
chr2 (598-638)||(39225015-39225055)
chr2 (598-638)||(39386062-39386102)
chr2 (598-660)||(39395954-39396016)
[»] chr5 (3 HSPs)
chr5 (593-714)||(38599532-38599661)
chr5 (459-510)||(33563521-33563572)
chr5 (598-639)||(33563679-33563720)
[»] chr3 (2 HSPs)
chr3 (575-638)||(51577150-51577213)
chr3 (465-510)||(51577041-51577086)


Alignment Details
Target: chr2 (Bit Score: 803; Significance: 0; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 803; E-Value: 0
Query Start/End: Original strand, 8 - 912
Target Start/End: Complemental strand, 39493429 - 39492537
Alignment:
Q  8 atttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaagatatctataatttgccttatt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  39493429 atttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagataaaatatcaggcaagatatctataatttgccttatt 39493330  T
Q  108 tttctttcatatggtgttatggatcaccacatttatacacatgaaattgaactgatatgttggcttcatacacttgatgcaaaatttaacatgttggtta 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493329 tttctttcatatggtgttatggatcaccacatttatacacatgaaattgaactgatatgttggcttcatacacttgatgcaaaatttaacatgttggtta 39493230  T
Q  208 attcttggaaaataaaatacacatattttgaacaatttattgaagtatacttcatcttttgtttcctagagcttattgtatagctgttttggtcagttta 307  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||| |||||    ||||||||||||||||||||||||||||||||||||||||||||    
T  39493229 attcttggaaaataaaatacacaaattttgaacaatttattcaagtgtactt----ttttgtttcctagagcttattgtatagctgttttggtcagttta 39493134  T
Q  308 atgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacggcaatataatgaagctgtcagattcagccgcgtatataacttc 407  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  39493133 atgaagtggaattttcttacaccttgcaggttttgtcaagaatcttatcaagcaacggcaatatgatgaagctgtcagattcagccgtgtatataacttc 39493034  T
Q  408 agcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaatta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493033 agcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaatta 39492934  T
Q  508 aggnnnnnnnncttattcggtttctattttatgaaatattccatcttcataccccttcatgaatcatgatagttataaataatttgaatatgaactcagg 607  Q
    |||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492933 aggttttttttcttattcggtttctattttatgaaatattccatcttcataccccttcatgaatcatgatagttataaataatttgaatatgaactcagg 39492834  T
Q  608 acaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagataacaacttagaattcaaggatctacttaacaagattgacaa 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39492833 acaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagataacaacctagaattcaaggatctacttaacaagattgacaa 39492734  T
Q  708 tcgtattcttgagctacagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtag 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39492733 tcgtattcttgagctacagagaggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtag 39492634  T
Q  808 agaaaacccgctaacacattcccttgtaaacgagttaacagatttatcgcagattcgcagaactagtcagttttgataaagtgaaattttgttgcagctt 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||    
T  39492633 agaaaacccgctaacacattcccttgtaaacgagttaacagattta--------tcgcagaactagtcagttttgataaagtgaaattttgttgcagctt 39492542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 273 - 749
Target Start/End: Original strand, 39131237 - 39131712
Alignment:
Q  273 ctagagcttattgtatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacggcaatata 372  Q
    |||||||||| | ||||||||||| ||||||||| ||| |||  ||||||||||||||||| || ||||||| |||||||| |||||  || ||||||      
T  39131237 ctagagcttactttatagctgttt-ggtcagtttgatggagttaaattttcttacaccttgcagattttgtcgagaatcttttcaagagacagcaatacg 39131335  T
Q  373 atgaagctgtcagattcagccgcgtatataacttcagcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctga 472  Q
    ||||||||||||||||||| || |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||    
T  39131336 atgaagctgtcagattcagtcgtgtatataacttcagcgacaataatcaactatttggtctctttgaagaacatgtgcagaatctaaagctaatttctga 39131435  T
Q  473 gagcatttgcaaggaaaccaactccattgaaattaaggnnnnnnnn------cttattcggtttctattttatgaaatattcca-tcttcataccccttc 565  Q
    ||| | |||||||||||| |||||||||||||||||||              |||||||  ||| |||||||||||| |||||| | |||||| ||||||    
T  39131436 gagtacttgcaaggaaactaactccattgaaattaaggttcattatttttttcttattcaatttttattttatgaaaaattccaattttcataacccttc 39131535  T
Q  566 atgaatcatgatagttataaataatttgaatatgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattataga 665  Q
    ||       |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  39131536 at-------gatagttataaatactttgaatgtgaactcaggacaaggccagagatcaagaagttgcttgtctcatagctgttctacaatgcattataga 39131628  T
Q  666 taacaacttagaattcaaggatctacttaacaagattgacaatcgtattcttgagctacagagaggcaaagagtgtttttactg 749  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39131629 taacaacctagaattcaaggatctacttaacaagattgacaatcgtattcttgagctacagagaggcaaatagtgtttttactg 39131712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 169; E-Value: 4e-90
Query Start/End: Original strand, 286 - 722
Target Start/End: Original strand, 39469057 - 39469490
Alignment:
Q  286 tatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacggcaatataatgaagctgtcag 385  Q
    ||||||||||||||||||||| |||||| | |||||||  | || ||| |||||||||  ||||||||||||||  ||   ||||| |||||||||| ||    
T  39469057 tatagctgttttggtcagtttgatgaagcgaaattttcgcagacattgtaggttttgttgagaatcttatcaagagacaagaatatgatgaagctgttag 39469156  T
Q  386 attcagccgcgtatataacttcagcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaag 485  Q
    ||| || |  |  |||||||||||| ||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39469157 atttagtcatgcgtataacttcagcaacagtaatcaactagttgatctattcgaagagcatgtgcagaatctaaaactaatttctgagagcatttgcaag 39469256  T
Q  486 gaaaccaactccattgaaattaagg---nnnnnnnncttattcggtttctattttatgaaata-ttccatcttcataccccttcatgaatcatgatagtt 581  Q
    | |||||||||||||||||||||||           |||||||  |||||||||||||||| | ||| |||||||||| |||       |||| ||||||    
T  39469257 ggaaccaactccattgaaattaaggttctttgttttcttattcaatttctattttatgaaacatttcaatcttcatactcct-------tcataatagtt 39469349  T
Q  582 ataaataatttgaatatgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagataacaacttagaattc 681  Q
    |||| || ||||||| ||||||||||| ||||| | |||||||||||||||||||||||  ||||||||||| |||||| ||||||||||| |||||| |    
T  39469350 ataagtactttgaatgtgaactcaggaaaaggctaaagatcaagaagttgctagtctcattgctgttctacaatgcattgtagataacaacctagaatcc 39469449  T
Q  682 aaggatctacttaacaagattgacaatcgtattcttgagct 722  Q
     ||||||||||||||||||||||| |||||||| |||||||    
T  39469450 caggatctacttaacaagattgacgatcgtattattgagct 39469490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 265 - 823
Target Start/End: Original strand, 39125230 - 39125804
Alignment:
Q  265 tttgtttcctagagcttattgtatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaacg 364  Q
    ||||||| ||||| |||||| |||||| ||||| ||||||||  ||||||| ||||| |||| |||||| || ||||||| ||||||||||||||  ||     
T  39125230 tttgtttactagaacttattttatagcagtttttgtcagtttggtgaagtgaaattt-cttaaaccttgcagtttttgtcgagaatcttatcaagagaca 39125328  T
Q  365 gcaatataatgaagctgtcagattcagccgcgtatataacttcagcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaacta 464  Q
    ||||||| |||||||||| |||||||| || | ||||||||||||| || |||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  39125329 gcaatatgatgaagctgttagattcagtcgtgcatataacttcagcaacgataatcaactagctgatctctttgaagaacatgtgca-aatctaaaacta 39125427  T
Q  465 atttctgagagcatttgcaaggaaaccaactccattgaaattaagg----------nnnnnnnncttattcggtttctattttatgaaatattccatctt 554  Q
    ||||||||||||| ||||||||||||| |||| ||||||||||| |                  |||||||  |||||| ||||||||| ||||||||||    
T  39125428 atttctgagagcaattgcaaggaaaccgactctattgaaattaaagttcttatttttttcttatcttattcaatttcta-tttatgaaacattccatctt 39125526  T
Q  555 cataccccttcatgaatcatgatagttataaataatttgaa---tatgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttcta 651  Q
    ||||| |||||||| ||  | ||| ||||||||| ||||||   | |    ||||||||||||||||| ||| |||||||||||||||  ||||||| |     
T  39125527 catacaccttcatg-atagttataattataaatactttgaacgttttctcatcaggacaaggccagaggtcaggaagttgctagtctcgtagctgttatc 39125625  T
Q  652 cagtgcattatagataacaacttagaattcaaggatctacttaacaagattgacaatcgtattcttgagct------acagagaggcaaagagtgttttt 745  Q
    || |||| ||||||||||||| || ||||||||||| |||||||||||||| ||  | |||||||||||||      ||||||||||||| |||||||||    
T  39125626 caatgcaatatagataacaacctaaaattcaaggatttacttaacaagatttacgcttgtattcttgagctgaaaagacagagaggcaaatagtgttttt 39125725  T
Q  746 actggaaacagcgagtgttatcctcctaataagaaacaaccta--atgtaaagatatgtggtagagaaaacccgctaaca 823  Q
    ||| ||| | | |||||| ||| ||| |||| | |||||||||  ||||||||||||||| ||| | ||||| |||||||    
T  39125726 actagaaccggtgagtgtcatcatcc-aatatgcaacaacctaatatgtaaagatatgtgctagcggaaacctgctaaca 39125804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 264 - 510
Target Start/End: Complemental strand, 39188443 - 39188196
Alignment:
Q  264 ttttgtttcctagagcttattgtatagctgttttggtcagtttaa-tgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaa 362  Q
    |||||||  ||||| |||||| |||||||||| |||||||||| | ||| |||  |||||||| ||||| | || ||||||  ||| |||||||||| ||    
T  39188443 ttttgttaactagaacttattttatagctgttctggtcagttttagtgatgtgagattttcttgcacctggcagattttgtacagagtcttatcaagaaa 39188344  T
Q  363 cggcaatataatgaagctgtcagattcagccgcgtatataacttcagcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaac 462  Q
    | ||||||| |||||||||| ||||||||  | | ||||||||||||| |||||| ||| ||||||||| ||||| ||||||||||||||||||||||      
T  39188343 cagcaatatgatgaagctgttagattcagttgtgcatataacttcagcaacaatactcagctagttgatatctttcaagaacatgtgcagaatctaaatt 39188244  T
Q  463 taatttctgagagcatttgcaaggaaaccaactccattgaaattaagg 510  Q
    |||| | |||||||| |||||||||| |||||||||||||||||||||    
T  39188243 taatctttgagagcagttgcaaggaagccaactccattgaaattaagg 39188196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 264 - 653
Target Start/End: Original strand, 39145113 - 39145483
Alignment:
Q  264 ttttgtttcctagagcttattgtatagctgttttggtcagtttaatgaagtggaattttcttacaccttgaaggttttgtcaagaatcttatcaagcaac 363  Q
    |||||||  ||||| |||||| ||||||||||||||||||||| |         |||||||| ||||| | || ||||||  ||| ||||||||||  ||    
T  39145113 ttttgttaactagaacttattttatagctgttttggtcagtttgag--------attttcttgcacctagcagattttgtacagagtcttatcaagagac 39145204  T
Q  364 ggcaatataatgaagctgtcagattcagccgcgtatataacttcagcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaact 463  Q
     ||||||| |||||||||| ||||||||  | | ||||||||||||| |||||| ||| ||||||||| ||||| ||||||||||||||||||||||  |    
T  39145205 agcaatatgatgaagctgttagattcagttgtgcatataacttcagcaacaatactcagctagttgatatctttcaagaacatgtgcagaatctaaattt 39145304  T
Q  464 aatttctgagagcatttgcaaggaaaccaactccattgaaattaaggnnnnnnnncttattcggtttctattttatgaaatattccatcttcatacccct 563  Q
    ||| | |||||||| |||||||||| |||||||||||||||||||||         || |||   ||| ||||||||||| ||||||||||||||||  |    
T  39145305 aatctttgagagcagttgcaaggaagccaactccattgaaattaaggtcttt----tttttcttattcaattttatgaaacattccatcttcataccatt 39145400  T
Q  564 tcatgaatcatgatagttataaataatttgaatatgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctaca 653  Q
           ||||  |||||||||||| |||||| |||||| ||||| || ||| ||||||||||  |||||||||||  ||||||||||||    
T  39145401 -------tcatcgtagttataaatactttgaacatgaacacaggataaagcctgagatcaagagattgctagtctcggagctgttctaca 39145483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 401 - 713
Target Start/End: Complemental strand, 39425253 - 39424947
Alignment:
Q  401 taacttcagcgacaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccatt 500  Q
    |||||| ||| ||||||||||| |||||||||||||   ||||||||||||||||  |||||| ||||||||||| | ||||| | |||||||||||||     
T  39425253 taacttgagcaacaataatcaattagttgatctcttgcgagaacatgtgcagaatgcaaaactgatttctgagagtacttgcatgaaaaccaactccatc 39425154  T
Q  501 gaaattaagg--nnnnnnnncttattcggtttctattttatgaaatattccatcttcataccccttcatgaatcatgatagttataaataatttgaatat 598  Q
    ||||||||||          |||||||  ||  |||||||||||| |||||||||||| |||| |       |||| ||||||||||||| ||||||  |    
T  39425153 gaaattaaggttctttttttcttattcaatt--tattttatgaaacattccatcttcacaccctt-------tcataatagttataaatactttgaactt 39425063  T
Q  599 gaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattatagataacaacttagaat-tcaaggatctacttaaca 697  Q
    | || ||||| || |||| |||||||||| ||||||||||| |||||||  ||||||| |||  |||||||||| ||||||   | ||||||||||||||    
T  39425062 gtacacaggaaaaagccatagatcaagaaattgctagtctcgaagctgtagtacagtgtattggagataacaacctagaatcagagggatctacttaaca 39424963  T
Q  698 agattgacaatcgtat 713  Q
    | |||||  |||||||    
T  39424962 acattgatgatcgtat 39424947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 39425517 - 39425439
Alignment:
Q  14 acttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaagatatct 92  Q
    ||||||||||||||||||| | | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39425517 acttgtttctcagcacaacttagctgtagagctgtttggggccatgggttttgcagataaaatatcaggcaagatatct 39425439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 39144789 - 39144892
Alignment:
Q  9 tttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaagatatctataatttgccttattt 108  Q
    ||||||||||||||||||||| |||| | ||| ||||||||||||||| |||| |||||| | |||||||| || ||||||||||  || |||||| |||    
T  39144789 tttggacttgtttctcagcacgacatagctgtagagctgtttggggccttgggatttgcaaataaaatatctggtaagatatctaatatctgccttgttt 39144888  T
Q  109 ttct 112  Q
    ||||    
T  39144889 ttct 39144892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 412 - 510
Target Start/End: Original strand, 39372297 - 39372395
Alignment:
Q  412 acaataatcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaagg 510  Q
    |||| ||| ||||||||||||||||  ||||||| || ||||||   ||||| |||| |||| ||| ||||||| ||||||||||||||||||| ||||    
T  39372297 acaagaataaactagttgatctcttgcaagaacacgtccagaatgccaaactgatttgtgagggcagttgcaagaaaaccaactccattgaaatcaagg 39372395  T

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Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 598 - 660
Target Start/End: Original strand, 39372498 - 39372560
Alignment:
Q  598 tgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcatt 660  Q
    ||||||||||| |||||||||||||||||| |||||||||| | | ||||||| |||||||||    
T  39372498 tgaactcaggataaggccagagatcaagaaattgctagtctgagaactgttctgcagtgcatt 39372560  T

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Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 93
Target Start/End: Complemental strand, 39188743 - 39188659
Alignment:
Q  9 tttggacttgtttctcagcacaacattgttgtggagctgtttggggccatgggttttgcagaaaaaatatcaggcaagatatcta 93  Q
    |||||||||||||||||| || |||| |  || ||||| ||||||||| | ||||||||||| |||||||| || ||||||||||    
T  39188743 tttggacttgtttctcagtacgacataggcgtagagctatttggggccttaggttttgcagataaaatatctggtaagatatcta 39188659  T

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Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 418 - 510
Target Start/End: Original strand, 39224818 - 39224910
Alignment:
Q  418 atcaactagttgatctctttgaagaacatgtgcagaatctaaaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaagg 510  Q
    ||||| |||||||| | ||  |||||||||| ||||||   ||||| |||| |||||||| ||||||| ||||||||||||||||||| ||||    
T  39224818 atcaattagttgatatgttgcaagaacatgtccagaatgccaaacttatttgtgagagcagttgcaagaaaaccaactccattgaaatcaagg 39224910  T

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Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 730 - 837
Target Start/End: Complemental strand, 39470958 - 39470851
Alignment:
Q  730 ggcaaagagtgtttttactggaaacagcgagtgttatcctcctaataagaaacaacctaatgtaaagatatgtggtagagaaaacccgctaacacattcc 829  Q
    |||||| ||| ||||||||||||  || |||||| ||| ||| |||| | |||||||||||||| || || ||||||| ||||||| |||||||  || |    
T  39470958 ggcaaatagtatttttactggaagtagtgagtgtcatcttccaaatacgcaacaacctaatgtatagttacgtggtagcgaaaacctgctaacatgtttc 39470859  T
Q  830 cttgtaaa 837  Q
    ||||||||    
T  39470858 cttgtaaa 39470851  T

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Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 638
Target Start/End: Original strand, 39180008 - 39180048
Alignment:
Q  598 tgaactcaggacaaggccagagatcaagaagttgctagtct 638  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  39180008 tgaactcaggataaggccagagatcaagaaattgctagtct 39180048  T

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Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 638
Target Start/End: Original strand, 39225015 - 39225055
Alignment:
Q  598 tgaactcaggacaaggccagagatcaagaagttgctagtct 638  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  39225015 tgaactcaggataaggccagagatcaagaaattgctagtct 39225055  T

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Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 598 - 638
Target Start/End: Complemental strand, 39386102 - 39386062
Alignment:
Q  598 tgaactcaggacaaggccagagatcaagaagttgctagtct 638  Q
    ||||||||||| |||||||||||||||||| ||||||||||    
T  39386102 tgaactcaggataaggccagagatcaagaaattgctagtct 39386062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 598 - 660
Target Start/End: Complemental strand, 39396016 - 39395954
Alignment:
Q  598 tgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcatt 660  Q
    ||||||||||| |||||||||||||||||| ||||| ||||   | |||||||||| ||||||    
T  39396016 tgaactcaggataaggccagagatcaagaaattgcttgtctgggaactgttctacaatgcatt 39395954  T

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Target: chr5 (Bit Score: 57; Significance: 3e-23; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 593 - 714
Target Start/End: Original strand, 38599532 - 38599661
Alignment:
Q  593 gaatatgaactcaggacaaggccagagatcaagaagttgctagtctcaaagctgttctacagtgcattataga--------taacaacttagaattcaag 684  Q
    ||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||||||| ||||||||||||        ||||||| |||||| | ||    
T  38599532 gaatatgaactcatgacaaggccagacatcaaaaagttgctagtctcatagttgttctacggtgcattatagatatcaagttaacaacctagaatcccag 38599631  T
Q  685 gatctacttaacaagattgacaatcgtatt 714  Q
    ||||||||||||||||||||| ||| ||||    
T  38599632 gatctacttaacaagattgacgatcatatt 38599661  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 459 - 510
Target Start/End: Original strand, 33563521 - 33563572
Alignment:
Q  459 aaactaatttctgagagcatttgcaaggaaaccaactccattgaaattaagg 510  Q
    ||||| |||| ||||||| |||||||| ||||||||||||||||||| ||||    
T  33563521 aaactgatttgtgagagcttttgcaagaaaaccaactccattgaaatcaagg 33563572  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 598 - 639
Target Start/End: Original strand, 33563679 - 33563720
Alignment:
Q  598 tgaactcaggacaaggccagagatcaagaagttgctagtctc 639  Q
    |||| |||||| |||||||||||||||||| |||||||||||    
T  33563679 tgaattcaggataaggccagagatcaagaaattgctagtctc 33563720  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 638
Target Start/End: Original strand, 51577150 - 51577213
Alignment:
Q  575 gatagttataaataatttgaatatgaactcaggacaaggccagagatcaagaagttgctagtct 638  Q
    ||||||||||||||| |||||| |||| |||||| || || ||||| |||||| ||||||||||    
T  51577150 gatagttataaataagttgaatgtgaattcaggataaagcaagagaccaagaaattgctagtct 51577213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 465 - 510
Target Start/End: Original strand, 51577041 - 51577086
Alignment:
Q  465 atttctgagagcatttgcaaggaaaccaactccattgaaattaagg 510  Q
    |||||||||||||  |||||| ||||||||||||||||||| ||||    
T  51577041 atttctgagagcaactgcaagaaaaccaactccattgaaatcaagg 51577086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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