View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019-Insertion-3 (Length: 903)
Name: NF5019-Insertion-3
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019-Insertion-3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 730; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 730; E-Value: 0
Query Start/End: Original strand, 7 - 903
Target Start/End: Original strand, 56278428 - 56279334
Alignment:
| Q |
7 |
aaaagatccttagtatagaactaactcctatatattagcttttattatcggattatcaccgaatgttttgggaccattttagtttatatatatgtagaaa |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
56278428 |
aaaagatccttagtatagaactaactcctatatattagcttttattatcggattatcaccgaatgttttgggat-attttagtttatatatatgtagaaa |
56278526 |
T |
|
| Q |
107 |
ctaagttgcctggaaggttccttccttcc----attccatagctgtggaa-------------gttatatattcttactagccattttagtatatatgtg |
189 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
56278527 |
ctaagttgcctggaaggttccttccttccttccattccatagctgtggaaattttgagctgaagttatatattcttactagccattttagtatatatgtg |
56278626 |
T |
|
| Q |
190 |
gacaaatttgagttgatcaatgttttcaagtttcaattaatatttctgccatgagttattaatagtatttcagtcaatgcataaccatttgatctttgca |
289 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278627 |
gacaaatttgagttgatcaatgttttcaagtttcaattaatatttctgcaatgagttgttaatagtatttcagtcaatgcataaccatttgatctttgca |
56278726 |
T |
|
| Q |
290 |
tacttttgcttgttaagtatctggcaatgttttatgatgagtttattttctatttctttgataaaagaaggactaaggagtgttctaggacttctaaaac |
389 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278727 |
tacttttgcttgttaagtatctgccaatgttttatgatgagtttattttctatttctttgataaaagaaggactaaggagtgttctaggacttctaaaac |
56278826 |
T |
|
| Q |
390 |
agttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctac |
489 |
Q |
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| T |
56278827 |
agttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaatagtcacattacatgacactaaagtatctcacccaattctac |
56278926 |
T |
|
| Q |
490 |
caaccctgtgcattggcctattccagtatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactactgaactgatcataactc |
589 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56278927 |
caaccctgtgcattggcctattccaatatacaattaaaatagctccctgcaacgcctacatccatctcacccaacataactactgaactgatcataactc |
56279026 |
T |
|
| Q |
590 |
tgccataatgcaaaatgattcagcagtataattggcacatccatcttattgaatccaagaccagcacataataattttatgcgcatcccttcaacataca |
689 |
Q |
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| T |
56279027 |
tgccataatgcaaaatgattcagcagtataattggcacatccatcttattgaatccaagaccagcacataataattttatgcgcatcccttca----aca |
56279122 |
T |
|
| Q |
690 |
taaatcagttgtac--ttggtttctattatctatgctgtgtctggtcctttttgatgcaccgctgcagccactttttgtttcaaatgccactattacatt |
787 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | |
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| T |
56279123 |
taaatcagttgtacaattggtttctattatctatgctgtgtctggtcctttttgatgcaccgctgcagccactttttgtttcaaatgccac--ttaca-t |
56279219 |
T |
|
| Q |
788 |
tttggtagcttgtatcccaaacaactc-attacttacagcagtccaacaattaaatgcctgtccttcgaatcttatttgtttg-agggcatgtacctgcc |
885 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||| |||||||||| | |
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| T |
56279220 |
tttggtagcttgtatcccaaacaactcaattacttacagcagtccaacaattaaatgcctgtccatcg-atcttgtttgtttgtaggccatgtacctg-c |
56279317 |
T |
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| Q |
886 |
ctcttcctccatatcttc |
903 |
Q |
| |
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||| |||||||||||||| |
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| T |
56279318 |
ctc-tcctccatatcttc |
56279334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 150 - 627
Target Start/End: Original strand, 46571223 - 46571709
Alignment:
| Q |
150 |
gaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctgcca-tgagttat |
248 |
Q |
| |
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|||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||||||||||| || |||||| |
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| T |
46571223 |
gaagttatatattcttactaaccattttagtat----gtggacaaatttcagttgatcaatggtttcaagtttcaaataatatttctggcaatgagttga |
46571318 |
T |
|
| Q |
249 |
taatagtatttcagtcaatgcataaccatttgatctttgcatacttttgcttgttaagtatctggcaatgttttatgatgagtttattttctatttcttt |
348 |
Q |
| |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||||||||||||| |||||||||||||| ||| |
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| T |
46571319 |
taatagtatttcagtcaatgcataaccatttcatctttgcatacttttgcttgttaaatatctgacattgttttatgatgaatttattttctatttattt |
46571418 |
T |
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| Q |
349 |
gataaaagaaggactaaggagtgttctaggacttctaaaacagttagttctcacaagcacaacacatgctatatatgtgatattggtttacatcaagaat |
448 |
Q |
| |
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||| |||||||||||||| ||||| ||||| | | || || |||| || |||||||||||||| |||||||||||||||||||||||||| |
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| T |
46571419 |
gat-aaagaaggactaagaagtgtcataggattgc---aatgaatatttctaacgagcacaacacatgc----catgtgatattggtttacatcaagaat |
46571510 |
T |
|
| Q |
449 |
agtcacattacatgacactaaagtatctcacccaattctaccaaccctgtgcattggcctattcca-------------gtatacaattaaaatagctcc |
535 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||| |||||| ||||||||| ||||||||| |
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| T |
46571511 |
agtcacattacatgacactaaagtatctcaccaaattctaccagccccgtgcattggccaattccaaaagacagcacccaaatacaattagaatagctcc |
46571610 |
T |
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| Q |
536 |
ctgcaacgcctacatccatctcacccaacataact-actga----actg--atcataactctgccataatgcaaaatgattcagcagtataattggcac |
627 |
Q |
| |
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|||||| |||||||||||||||||||||||| || ||| | |||| |||| |||| |||||||||||||||||||||||| |||||||||||| |
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| T |
46571611 |
ctgcaatgcctacatccatctcacccaacattgctcactcaaactactgacatcacaacttagccataatgcaaaatgattcagcactataattggcac |
46571709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 733 - 855
Target Start/End: Original strand, 46571710 - 46571830
Alignment:
| Q |
733 |
tcctttttgatgcaccgctgcagccactttttgtttcaaatgccactattacatttttggtagcttgtatcccaaacaactc-attacttacagcagtcc |
831 |
Q |
| |
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||||||||||||||| ||||| || |||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||| ||||| |||| ||| | |
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| T |
46571710 |
tcctttttgatgcactgctgctgctactttttgtttctaatgccac--ttaca-ttttggtaacttgtatcccaaacaactcaattacctacattagttc |
46571806 |
T |
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| Q |
832 |
aacaattaaatgcctgtccttcga |
855 |
Q |
| |
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||||||||||||||| ||| |||| |
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| T |
46571807 |
aacaattaaatgcctctccatcga |
46571830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 3e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 15979284 - 15979201
Alignment:
| Q |
150 |
gaagttatatattcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
237 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15979284 |
gaagttatatattcttactagccattttagtat----gtggagaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
15979201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 161 - 237
Target Start/End: Complemental strand, 19125690 - 19125618
Alignment:
| Q |
161 |
ttcttactagccattttagtatatatgtggacaaatttgagttgatcaatgttttcaagtttcaattaatatttctg |
237 |
Q |
| |
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|||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19125690 |
ttcttactcgccattttagtat----gtggacaaatttgagttgatcaatgttttcaagtttcaatgaatatttctg |
19125618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 180
Target Start/End: Complemental strand, 19146637 - 19146607
Alignment:
| Q |
150 |
gaagttatatattcttactagccattttagt |
180 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
19146637 |
gaagttatatattcttactagccattttagt |
19146607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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