View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019-Insertion-4 (Length: 742)
Name: NF5019-Insertion-4
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019-Insertion-4 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 8 - 742
Target Start/End: Original strand, 23177706 - 23178443
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatattgacagtataagcagagaaaagactagaagcatgctaag |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23177706 |
ttaaatcctctatcgccacagtctgcacaaatggtgcataattttatatttccaactatatggacagtataagcagagaaaagactagaagcatgctaag |
23177805 |
T |
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| Q |
108 |
ttgaacagagtatggtccacggtcttactaagcaacccaccgaaactgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
207 |
Q |
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|||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23177806 |
ttgaacagagtacggtccacggtcttactaagcaatccaccgaaattgaacagtaaacccgaaaagagaaacctgggggttagagcactataaataagag |
23177905 |
T |
|
| Q |
208 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagcggtcggttaatatgttcatgcgcatcaggaagtctatatattgcacatctga |
307 |
Q |
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| T |
23177906 |
gtaggtagaaagtttaataccttttttggaaatttaactccatgtagtggtcggttaatatgttcatgcgcatcaggaagtctatatattgcacatctga |
23178005 |
T |
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| Q |
308 |
gcaccagtacagtacatacnnnnnnntaataaattacatcacttgatttaaagttctagnnnnnnnnn---tttacatcacttgatttaaagttcttatt |
404 |
Q |
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| T |
23178006 |
gcaccagtacagtacatacaaaaaa-taataaattacatcacttgatttaaagttctaaaaaaaataaaaatttacatcacttgatttaaagttcttatt |
23178104 |
T |
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| Q |
405 |
atattatactccgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctcca |
504 |
Q |
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| T |
23178105 |
atattatactctgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctcca |
23178204 |
T |
|
| Q |
505 |
tcacagaaggatgtgtaaccattcattccaccactgcatgtatc-ataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaatag |
603 |
Q |
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| T |
23178205 |
tcacagaaggatatgtaaccattcattccaccactgcatgtatccataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataaatag |
23178304 |
T |
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| Q |
604 |
aatatatgatgtatacttggacgataaaaaacatgccattctgcttgtccagagtttggaaaaataaacacccaccgtcaaaggtttcaaaactattggt |
703 |
Q |
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| T |
23178305 |
aatatatgatgtatacttggacgataaaaaacatgccattctgcttgtccagagtttggaaaaataaacacccaccgtcaaaggtttcaaaactattggt |
23178404 |
T |
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| Q |
704 |
tttttacttcccaattaacacaatcctcatcaaaagatt |
742 |
Q |
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| T |
23178405 |
tttttacttcccaattaacacaatcctcatcaaaagatt |
23178443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 377 - 617
Target Start/End: Original strand, 23890924 - 23891165
Alignment:
| Q |
377 |
ttacatcacttgatttaaagttcttattatattatactccgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtga |
476 |
Q |
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| T |
23890924 |
ttacatcacttgattttaagttcttattatattatactccgcattgaaaaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtga |
23891023 |
T |
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| Q |
477 |
cctgaagaaaggagggcaaggttctccatcacagaaggatgtgtaaccattcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagc |
575 |
Q |
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| T |
23891024 |
cctgaagaaaggacggcaaggttctccatcacagaaggatatgtaaccattcattccaccactgcatgtatccataaatatcatcagaaaatagtcgagc |
23891123 |
T |
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| Q |
576 |
aagatcttcattttgtcattataaatagaatatatgatgtat |
617 |
Q |
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| T |
23891124 |
aagatcttaattttgtcattataaataggatatatgatgtat |
23891165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 161 - 364
Target Start/End: Original strand, 23890743 - 23890947
Alignment:
| Q |
161 |
taaacccgaaaagagaaacctggggg--ttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagcggt |
258 |
Q |
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| T |
23890743 |
taaacccgaaaagagaaacatgggagagttagagcactataaataagaggtcggtagagagtttaataccttttttggaaatttaactccatgtagtggt |
23890842 |
T |
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| Q |
259 |
cggttaatatgttcatgcgcatcaggaagtctatatattgcacatctgagcaccagtacagtacatacnnnnnnntaataaattacatcacttgatttaa |
358 |
Q |
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| T |
23890843 |
cggttaatatgttcatgcgcatcaggaagtctatatattgcacatctgaggtcaagtatagtacataaaaaaaattaa-aaattacatcacttgatttta |
23890941 |
T |
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| Q |
359 |
agttct |
364 |
Q |
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| T |
23890942 |
agttct |
23890947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 45
Target Start/End: Original strand, 23890695 - 23890732
Alignment:
| Q |
8 |
ttaaatcctctatcgccacagtctgcacaaatggtgca |
45 |
Q |
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| T |
23890695 |
ttaaatcctctatcgccacagtctgcataaatggtgca |
23890732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 425 - 599
Target Start/End: Complemental strand, 7868891 - 7868716
Alignment:
| Q |
425 |
aaacttacatcacatgattatcgatgatgtcttccatgcctgcaacaggtgacctgaagaaaggagggcaaggttctccatcacagaaggatgtgtaacc |
524 |
Q |
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| T |
7868891 |
aaacttacatgacatgattatccatgatgtcttccatgcctgcaataggggacctgaagatgggagggcaaggttctccactacataaggatatgtaacc |
7868792 |
T |
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| Q |
525 |
attcattccaccactgcatgtat-cataaataacatgagaaaatagtcgagcaagatcttcattttgtcattataa |
599 |
Q |
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| T |
7868791 |
attcattccaccactgcatgtatccctaaataacatcagaaagtaatcgagcaagatcttaaatttgccattataa |
7868716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 7869182 - 7869053
Alignment:
| Q |
186 |
gttagagcactataaataagaggtaggtagaaagtttaataccttttttggaaatttaactccatgtagcggtcggttaatatgttcatgcgcatcagga |
285 |
Q |
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| T |
7869182 |
gttagagcactattaataagcagcaggtagaaaatttaataccttctttggaaacttaactccatgtggtggtcgagctatatgttcatgtgcatctgga |
7869083 |
T |
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| Q |
286 |
agtctatatattgcacatctgagcaccagt |
315 |
Q |
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| T |
7869082 |
agtctatatattgcacatctgagcaccagt |
7869053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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