View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019-Insertion-6 (Length: 524)
Name: NF5019-Insertion-6
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019-Insertion-6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 466; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 16 - 524
Target Start/End: Original strand, 51121943 - 51122452
Alignment:
| Q |
16 |
tttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatctttccttgatgttgtctggtatgtcatttcatcttatcagtatatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51121943 |
tttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaggtaaatctttccttgatgttgtctggtatgtcatttcatcttatcagtatatg |
51122042 |
T |
|
| Q |
116 |
gtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagctttttgtcacatgattttggctaatggataaaa-ataat |
214 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51122043 |
gtgcttgtgttgctttctcagtatttaattttatatactttattgtctaggaagctgcagctttttgtcacatgattttggctaatggataaaaaataat |
51122142 |
T |
|
| Q |
215 |
tgattgtctcaatttattgcatatttggatgatatttcctctacatcctaagggaaataatccttttttcccttataaaaatgtatgtcttgtctttgct |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
51122143 |
tgattgtctcaatttattgcatatttggatgatatttcctccacatcctaagggaaataatccttttttcccttataaaaatgtatgccttgtctttgct |
51122242 |
T |
|
| Q |
315 |
tgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacat |
414 |
Q |
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| T |
51122243 |
tgctatgttgctttactcctgtataaattataagatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatcacat |
51122342 |
T |
|
| Q |
415 |
ttgtgtcctcatccttaattttctttgaattttttgtctcaagcttgcagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaaca |
514 |
Q |
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| T |
51122343 |
ttgtgtcctcatccttatttttctttgaattttttgtctcaggcttgcagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaaca |
51122442 |
T |
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| Q |
515 |
tatattttca |
524 |
Q |
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|||||||||| |
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| T |
51122443 |
tatattttca |
51122452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 170; Significance: 5e-91; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 311 - 500
Target Start/End: Original strand, 38827431 - 38827620
Alignment:
| Q |
311 |
tgcttgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatc |
410 |
Q |
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| T |
38827431 |
tgcttgctatgttgttttactcctgtataaattataggatttgcttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatc |
38827530 |
T |
|
| Q |
411 |
acatttgtgtcctcatccttaattttctttgaattttttgtctcaagcttgcagaaaatggcaattcaatttaaacaaaaggtgactgca |
500 |
Q |
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| T |
38827531 |
acatttgtgtcctcatccttagttttctttgaattttttgtctcaggcttgcagaaaatggcaattcaatttaaacaaaaggttactgca |
38827620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 166; Significance: 1e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 311 - 500
Target Start/End: Original strand, 30369309 - 30369498
Alignment:
| Q |
311 |
tgcttgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttgtaatc |
410 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30369309 |
tgcttgctatgttgttttactcctgtataaattataggatttgcttgtgacatggtatatatttaagtttatgaacacatttatattgaggtttttaatc |
30369408 |
T |
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| Q |
411 |
acatttgtgtcctcatccttaattttctttgaattttttgtctcaagcttgcagaaaatggcaattcaatttaaacaaaaggtgactgca |
500 |
Q |
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| T |
30369409 |
acatttgtgtcctcatccttagttttctttgaattttttgtctcagacttgcagaaaatggcaattcaatttaaacaaaaggtgactgca |
30369498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 298 - 373
Target Start/End: Original strand, 30072729 - 30072804
Alignment:
| Q |
298 |
tatgtcttgtctttgcttgctatgttgttttactcttgtataaattataggatttgtttgtgacatggtatatatt |
373 |
Q |
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| T |
30072729 |
tatgccttgtctttgcttgctatgctgttttactcttgtataaattataggatttgcttgtgacatggtatatatt |
30072804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 462 - 524
Target Start/End: Complemental strand, 34947568 - 34947506
Alignment:
| Q |
462 |
cagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaacatatattttca |
524 |
Q |
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| T |
34947568 |
cagaaaatggcaattcaatttaaacaaaaggtgactgcaggctttgttcaacatataatttca |
34947506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 74
Target Start/End: Original strand, 45245976 - 45246042
Alignment:
| Q |
8 |
ttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcactttgcaagtaaatctttcc |
74 |
Q |
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| T |
45245976 |
ttttctcttttgtatattgattgtgttttaaatgtcttgccttttcactctgcaggtatatgtttcc |
45246042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 365
Target Start/End: Original strand, 30013026 - 30013092
Alignment:
| Q |
303 |
cttgtctttgcttgctat----gttgttttactcttgtataaattataggatttgtttgtgacatgg |
365 |
Q |
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| T |
30013026 |
cttgtctttgcttgctatatatgttgttttactcctgtataaattataggatttgcttgtgacatgg |
30013092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 153; Significance: 7e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 39016718 - 39016527
Alignment:
| Q |
72 |
tccttgatgttgtctggtatgtcatttcatcttatcagtata--tggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaag |
169 |
Q |
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| T |
39016718 |
tccttgatgttgtctggtatgtcatttcatcttatcagaataaatggtgcctgtgttgctttctcagtatttaattttatatactttattgtctaggaag |
39016619 |
T |
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| Q |
170 |
ctgcagctttttgtcacatgattttggctaatggata-aaaataattgattgtctcaatttattgcatatttggatgatatttcctctacat |
260 |
Q |
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| T |
39016618 |
ctgcagttttttgtcacatgattttggctaatggataaaaaataattgattgtctcaattcattgcatatttggatgatctttcctccacat |
39016527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 268 - 448
Target Start/End: Complemental strand, 39016478 - 39016296
Alignment:
| Q |
268 |
gaaataatccttttttcccttataaaaatgtatgtcttgtctttgcttgctatgt--tgttttactcttgtataaattataggatttgtttgtgacatgg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
39016478 |
gaaataatccttttttcccttataaaaatgtatgccttgtctttgcttgctatacactattttactcctgtataaattataggatttgcttgtgacatgg |
39016379 |
T |
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| Q |
366 |
tatatatttaagtttatgaacacatttatattgaggtttgtaatcacatttgtgtcctcatccttaattttctttgaattttt |
448 |
Q |
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| T |
39016378 |
tatatattatagtttattaacatatttatattgaggtttgtaatcacatttgtgtcctcatccttagttttcattgaattttt |
39016296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 462 - 516
Target Start/End: Original strand, 21529911 - 21529965
Alignment:
| Q |
462 |
cagaaaatggcaattcaatttaaacaaaaggtgactgcaagctttgttcaacata |
516 |
Q |
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| T |
21529911 |
cagaaaatgacaatttaatttaaacaaaaggtgactgcaagctttgttcaacata |
21529965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 48885970 - 48886017
Alignment:
| Q |
8 |
ttttctcctttgtatagtgattgtgttttaaatgtcttgccttttcac |
55 |
Q |
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|||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
48885970 |
ttttctcctttgtatagtgattgtcttttaaatgtctttccttttcac |
48886017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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