View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019-Insertion-7 (Length: 407)
Name: NF5019-Insertion-7
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019-Insertion-7 |
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| [»] chr1 (4 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Original strand, 46440914 - 46441313
Alignment:
| Q |
8 |
aacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtggggcttttcaat |
107 |
Q |
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| T |
46440914 |
aacatgactgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtgaggcttttcaat |
46441013 |
T |
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| Q |
108 |
cgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaa |
207 |
Q |
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| T |
46441014 |
cgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaa |
46441113 |
T |
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| Q |
208 |
caaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaacac |
307 |
Q |
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| T |
46441114 |
caaccttgctgatgaggttgttgtcatccttaatttcctagagagttctcattgccctaacgtttatgtacacgaatcaaatttgccattgattcaacac |
46441213 |
T |
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| Q |
308 |
atcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagagctt |
407 |
Q |
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| T |
46441214 |
atcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatgacatcaccaagttcatcaatgatgtatgtgttagagctt |
46441313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 16 - 407
Target Start/End: Complemental strand, 18331725 - 18331334
Alignment:
| Q |
16 |
tgtgaccaaagaacaattcaacttattttacaatgttgacaggcaactcttcactcgtttggtggtggggcttggccgtggggcttttcaatcgataaat |
115 |
Q |
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| T |
18331725 |
tgtgaccaaagaagaatttaacttgttttacagtgttgatcgacaactcttcactcgtttgctggtcgcgcttgatcgtgagatctctcagtcaataaat |
18331626 |
T |
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| Q |
116 |
gtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgctaaacaaccttg |
215 |
Q |
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| T |
18331625 |
gtaatggccttcctcatgtggcttgagaggaaatccaaatactataatttagtagcaaagattcttcaacaatggtcggatgttatgcttagcaaccttg |
18331526 |
T |
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| Q |
216 |
ctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaacacatcttgcg |
315 |
Q |
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| T |
18331525 |
ctgacgaggctgttgtcatcctgaattgcattgggagttcccattaccctaacacttttgtaggcaaatcgaagttgccattgattcaacacatctgtcg |
18331426 |
T |
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| Q |
316 |
tagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagagctt |
407 |
Q |
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| T |
18331425 |
tttcaatgtgacgcttgagtttttccatgaaaaacgcctcgaagtgatcactggtgtcaccaagatcatcaatgatgtatgtgttagagctt |
18331334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 407
Target Start/End: Original strand, 17616215 - 17616517
Alignment:
| Q |
105 |
aatcgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgct |
204 |
Q |
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| T |
17616215 |
aatcaataagtgtaatggctttcttgatttggattgaaagaaaaagtaaacaattcaatttggtagcaaatactcttcaacattggcctaatgtcatgct |
17616314 |
T |
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| Q |
205 |
aaacaaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaa |
304 |
Q |
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| T |
17616315 |
aagcagtcttgctgatgagtttgttgtaatccttaattgcattgagagttctcgataccctaactcttttttaaggaaaaataagttgctattgattcaa |
17616414 |
T |
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| Q |
305 |
cacatcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagag |
404 |
Q |
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| T |
17616415 |
caaatcatgcgtcgcaatgtgacttttgaatttttccatgaaaaacgcctcgagctgatcattgatgtcacaaagttcattaataatgtctgtattagag |
17616514 |
T |
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| Q |
405 |
ctt |
407 |
Q |
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| T |
17616515 |
ctt |
17616517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 105 - 405
Target Start/End: Complemental strand, 722990 - 722690
Alignment:
| Q |
105 |
aatcgataaatgtaatggctttcttgatgtggattgagtggataagtaaagatggtaatttagtagcaaatattctttcacattggtcggacataatgct |
204 |
Q |
| |
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||||||| ||||||||||| ||| | ||||| |||||| |||||||||||| ||||| |||||||| ||||| |||||||| || | ||||| |
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| T |
722990 |
aatcgatcaatgtaatggccttccttatgtgcattgagatgataagtaaagaattcaatttggtagcaaagattctcaagcattggtcaaacgttatgct |
722891 |
T |
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| Q |
205 |
aaacaaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattgattcaa |
304 |
Q |
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| T |
722890 |
aaacatgctagctgatgaagctgtcttcatccttgattgcattgtgagttctccataccctaatgattgtgtaagggaaaagaaattaccattgattcaa |
722791 |
T |
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| Q |
305 |
cacatcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgttagag |
404 |
Q |
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| T |
722790 |
cacatattgcaccacaatgcgacgttcgagtttttccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtattagag |
722691 |
T |
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| Q |
405 |
c |
405 |
Q |
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| T |
722690 |
c |
722690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 200 - 407
Target Start/End: Original strand, 11574488 - 11574695
Alignment:
| Q |
200 |
atgctaaacaaccttgctgatgaggttgttgtcatccttaatttcatagagagttctcattgccctaacgtttatgtactcgaatcaaatttgccattga |
299 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||| |||| ||| || | |||||||| ||||||| || |||| | |||||||||||||||||| |
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| T |
11574488 |
atgctaagcaaccttgctgatgaggttgttgtcatcctgaattgcatcgaaatttctcattaccctaacacttttgtaggccaatcaaatttgccattga |
11574587 |
T |
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| Q |
300 |
ttcaacacatcttgcgtagaaatgtgacactcaagtttttccatgaaaaacgcctcgaagtgatcaatggcatcaccaagttcatcaatgatgtatgtgt |
399 |
Q |
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| T |
11574588 |
ttcaacacatattgtgccgcaatttgacacttgagttttttcataaaaaacgcctcgaagtaatcaatgatgtcaccaagttaatcaatgatgtgtgtgt |
11574687 |
T |
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| Q |
400 |
tagagctt |
407 |
Q |
| |
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|| ||||| |
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| T |
11574688 |
tatagctt |
11574695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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