View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019_high_5 (Length: 385)
Name: NF5019_high_5
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 10195195 - 10194863
Alignment:
| Q |
1 |
atgaaagtcaatttgtaatgtgtggtgtagtcatttttctggaactaccgacgtgcaggaagctgttgctgtaaccactgcaatacaggaagaaattttt |
100 |
Q |
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| T |
10195195 |
atgaaagtcaatttgttatgtgtggtgttgtcatttttcttgaactaccgacgtgcaggaagctgttgctgtaaccactgcaatacaggaagaaattttt |
10195096 |
T |
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| Q |
101 |
ctggagatgggtgttggtatgttttttgtactgatatatatccgttattggtgtgtgtatctatagataggatatttcttttttagcagttaaaaagata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
10195095 |
ctggagatgggtgttggtatgttttttgtactgatatatatcctttattggtgtgtgtatctatagataggatatttcttttttagcagttaaatagata |
10194996 |
T |
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| Q |
201 |
tacagatgataaaattttgaactggtcattgatggattgtgatgtagtattaggtttttgaggcaacaaactgagttatagcagcctcttaaaggcttac |
300 |
Q |
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| T |
10194995 |
tacagatgataaaattttgaactggtcattgatggattgtgatgtagtatttggtttttgaggcaacaaactgagttatagcagcctcttaaagtcttac |
10194896 |
T |
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| Q |
301 |
aaacctcccctttatgttgtatctgcattgact |
333 |
Q |
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| T |
10194895 |
aaacctcctctttatgttgtatctgcattgact |
10194863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 240 - 328
Target Start/End: Original strand, 19458868 - 19458956
Alignment:
| Q |
240 |
tgatgtagtattaggtttttgaggcaacaaactgagttatagcagcctcttaaaggcttacaaacctcccctttatgttgtatctgcat |
328 |
Q |
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||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||| |
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| T |
19458868 |
tgatgtagtgttaggtttttgagttcacagactgagttatagcagcctcttaaaggcttacaagcctcccctttttattgtatctgcat |
19458956 |
T |
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