View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5019_low_11 (Length: 258)

Name: NF5019_low_11
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5019_low_11
NF5019_low_11
[»] chr8 (26 HSPs)
chr8 (16-254)||(27974572-27974831)
chr8 (16-254)||(28031841-28032100)
chr8 (16-242)||(27878216-27878442)
chr8 (16-242)||(28018397-28018623)
chr8 (16-254)||(27915160-27915400)
chr8 (16-254)||(27961579-27961819)
chr8 (24-242)||(12522018-12522236)
chr8 (26-242)||(42423475-42423690)
chr8 (16-191)||(12737688-12737863)
chr8 (16-242)||(44977001-44977226)
chr8 (26-160)||(27869555-27869688)
chr8 (61-242)||(6387748-6387929)
chr8 (16-254)||(8029458-8029680)
chr8 (18-145)||(3007417-3007543)
chr8 (22-149)||(24082561-24082688)
chr8 (16-69)||(41394306-41394359)
chr8 (16-69)||(6387506-6387559)
chr8 (34-102)||(33177492-33177560)
chr8 (18-69)||(37131184-37131235)
chr8 (18-82)||(24067259-24067321)
chr8 (18-79)||(35879824-35879885)
chr8 (177-242)||(41394210-41394275)
chr8 (50-102)||(4870784-4870837)
chr8 (25-78)||(7760953-7761006)
chr8 (18-78)||(17234872-17234932)
chr8 (20-104)||(19484591-19484675)
[»] chr4 (21 HSPs)
chr4 (16-242)||(24966097-24966323)
chr4 (16-242)||(33139064-33139291)
chr4 (26-242)||(32890146-32890361)
chr4 (17-242)||(29509667-29509892)
chr4 (20-140)||(50517486-50517606)
chr4 (61-254)||(46286967-46287162)
chr4 (16-242)||(46862550-46862762)
chr4 (16-77)||(26490881-26490942)
chr4 (49-134)||(35518147-35518232)
chr4 (106-254)||(53574002-53574150)
chr4 (18-102)||(40317279-40317363)
chr4 (18-102)||(40327353-40327437)
chr4 (18-79)||(24454025-24454086)
chr4 (49-102)||(25842621-25842674)
chr4 (18-78)||(871954-872014)
chr4 (184-226)||(17503527-17503569)
chr4 (42-102)||(26955687-26955747)
chr4 (106-145)||(17503465-17503504)
chr4 (20-98)||(42937220-42937298)
chr4 (17-85)||(21306005-21306073)
chr4 (20-104)||(29469541-29469625)
[»] chr6 (9 HSPs)
chr6 (16-242)||(16438971-16439196)
chr6 (17-242)||(33640878-33641103)
chr6 (16-237)||(28900436-28900661)
chr6 (16-242)||(2607177-2607403)
chr6 (16-241)||(24194742-24194967)
chr6 (42-254)||(31534729-31534927)
chr6 (129-254)||(31975358-31975484)
chr6 (17-102)||(21010521-21010605)
chr6 (42-100)||(15381210-15381268)
[»] chr7 (15 HSPs)
chr7 (16-242)||(16709807-16710033)
chr7 (16-242)||(17684043-17684269)
chr7 (16-242)||(43172335-43172561)
chr7 (16-254)||(23017255-23017479)
chr7 (16-257)||(21486404-21486632)
chr7 (16-136)||(42610887-42611007)
chr7 (43-242)||(5771747-5771945)
chr7 (16-83)||(31445773-31445840)
chr7 (17-102)||(6268856-6268941)
chr7 (18-69)||(33496988-33497039)
chr7 (20-104)||(14741829-14741913)
chr7 (20-104)||(4639513-4639597)
chr7 (39-102)||(1254147-1254210)
chr7 (16-69)||(42043751-42043803)
chr7 (21-69)||(26201686-26201734)
[»] chr1 (19 HSPs)
chr1 (16-242)||(47371174-47371400)
chr1 (16-242)||(3593506-3593732)
chr1 (16-242)||(32759706-32759932)
chr1 (16-242)||(49236602-49236828)
chr1 (16-237)||(42303985-42304207)
chr1 (16-214)||(35176872-35177071)
chr1 (16-212)||(49452665-49452860)
chr1 (16-242)||(25253797-25254026)
chr1 (16-136)||(28403583-28403705)
chr1 (16-95)||(19863274-19863353)
chr1 (61-242)||(48966155-48966321)
chr1 (17-102)||(46042298-46042383)
chr1 (27-102)||(226321-226396)
chr1 (18-69)||(52182491-52182542)
chr1 (17-102)||(42637749-42637835)
chr1 (20-104)||(1242920-1243004)
chr1 (18-56)||(49971490-49971528)
chr1 (20-104)||(41353819-41353903)
chr1 (177-254)||(28403731-28403809)
[»] chr2 (16 HSPs)
chr2 (16-254)||(31846772-31847011)
chr2 (20-254)||(38295332-38295568)
chr2 (16-257)||(40829887-40830128)
chr2 (16-254)||(34342500-34342739)
chr2 (16-252)||(18727247-18727484)
chr2 (16-170)||(9731286-9731439)
chr2 (18-102)||(32294264-32294348)
chr2 (17-102)||(37810497-37810582)
chr2 (22-102)||(24026204-24026280)
chr2 (18-78)||(3858307-3858367)
chr2 (18-69)||(15926490-15926541)
chr2 (18-67)||(43617911-43617960)
chr2 (20-104)||(18899542-18899626)
chr2 (27-67)||(2308172-2308212)
chr2 (18-69)||(32294444-32294494)
chr2 (42-102)||(30850793-30850853)
[»] chr3 (13 HSPs)
chr3 (16-236)||(4962315-4962535)
chr3 (16-254)||(43173159-43173398)
chr3 (16-242)||(49458640-49458861)
chr3 (16-242)||(33693535-33693761)
chr3 (16-242)||(21386093-21386319)
chr3 (16-172)||(7437154-7437309)
chr3 (131-242)||(16155418-16155529)
chr3 (17-102)||(30238175-30238259)
chr3 (18-78)||(21718344-21718404)
chr3 (18-69)||(25050035-25050086)
chr3 (184-242)||(7667178-7667236)
chr3 (20-104)||(53836336-53836420)
chr3 (73-102)||(9031712-9031741)
[»] scaffold0573 (1 HSPs)
scaffold0573 (16-237)||(9133-9358)
[»] scaffold0013 (1 HSPs)
scaffold0013 (16-254)||(89540-89780)
[»] chr5 (9 HSPs)
chr5 (16-242)||(34218701-34218926)
chr5 (16-191)||(29716506-29716681)
chr5 (17-94)||(31913805-31913883)
chr5 (17-102)||(36195987-36196069)
chr5 (20-104)||(5650412-5650496)
chr5 (18-86)||(21490040-21490107)
chr5 (43-102)||(15286126-15286185)
chr5 (18-65)||(16497519-16497566)
chr5 (20-104)||(37797757-37797842)
[»] scaffold0037 (1 HSPs)
scaffold0037 (189-242)||(36961-37014)
[»] scaffold0118 (1 HSPs)
scaffold0118 (49-102)||(38242-38295)


Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 27974572 - 27974831
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27974572 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgacaaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 27974671  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccgg---------------------cgtcggaatctaaatttccaccatcagaatcacaaccctaattg 194  Q
    |||||||||| ||||||||||||||||||||||||                     |||||||||||||||||||||| |||||||||||||||||||||    
T  27974672 accaccgaaatcctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccgtcggaatctaaatttccaccgtcagaatcacaaccctaattg 27974771  T
Q  195 gtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaacaaacgtttcat 254  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  27974772 gtatgtgctcccatgttcatagtttcagaacttagagaagaaagaaaacaaacgtttcat 27974831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 28031841 - 28032100
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28031841 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgacaaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 28031940  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccgg---------------------cgtcggaatctaaatttccaccatcagaatcacaaccctaattg 194  Q
    |||||||||| ||||||||||||||||||||||||                     |||||||||||||||||||||| |||||||||||||||||||||    
T  28031941 accaccgaaatcctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccgtcggaatctaaatttccaccgtcagaatcacaaccctaattg 28032040  T
Q  195 gtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaacaaacgtttcat 254  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28032041 gtatgtgctcccatgttcatagtttcagaacttagagaagaaagaaaacaaacgtttcat 28032100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 27878216 - 27878442
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  27878216 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgataataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacacc 27878315  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    |||| || ||||||||||| |||  ||||||||||||||| |||||||||||||||  || |||| |||||||| ||||||||||||||||||||||||     
T  27878316 accatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaatttccactttcggaatgacaaccctgattggtatgtgctcccatgttcatg 27878415  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||||||||||||||||||||||||||    
T  27878416 gtttcagaactcagagaagaaagaaaa 27878442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 28018397 - 28018623
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  28018397 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgataataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacacc 28018496  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    |||| || ||||||||||| |||  ||||||||||||||| |||||||||||||||  || |||| |||||||| ||||||||||||||||||||||||     
T  28018497 accatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaatttccactttcggaatgacaaccctgattggtatgtgctcccatgttcatg 28018596  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||||||||||||||||||||||||||    
T  28018597 gtttcagaactcagagaagaaagaaaa 28018623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 27915160 - 27915400
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  27915160 aaaaccatccaaaaaagcaagtttcacaagttcctaaaattgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacacc 27915259  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    |||| || ||||||||||| |||  ||||||||||||||| ||||||||||| | |  || ||||||||||||| ||||||||||||||||||||||||     
T  27915260 accatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaattttcgctttcggaatcacaaccctgattggtatgtgctcccatgttcatg 27915359  T
Q  216 gtttcagaactcagagaagaaaga--aaacaaacgtttcat 254  Q
    ||||||||||||||||||||||||  ||| |||||||||||    
T  27915360 gtttcagaactcagagaagaaagaagaaaaaaacgtttcat 27915400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 27961579 - 27961819
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  27961579 aaaaccatccaaaaaagcaagtttcacaagttcctaaaattgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacacc 27961678  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    |||| || ||||||||||| |||  ||||||||||||||| ||||||||||| | |  || ||||||||||||| ||||||||||||||||||||||||     
T  27961679 accatcgcaaccctaaccgacataacaatcaccggcgtcgaaatctaaattttcgctttcggaatcacaaccctgattggtatgtgctcccatgttcatg 27961778  T
Q  216 gtttcagaactcagagaagaaaga--aaacaaacgtttcat 254  Q
    ||||||||||||||||||||||||  ||| |||||||||||    
T  27961779 gtttcagaactcagagaagaaagaagaaaaaaacgtttcat 27961819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 24 - 242
Target Start/End: Original strand, 12522018 - 12522236
Alignment:
Q  24 ccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccga 123  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||     
T  12522018 ccaaaaaagcatgtttcacaagttcctaaagttgttattaaaactatcaaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccgccgc 12522117  T
Q  124 aaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcaga 223  Q
    ||||| || || || |||||||| |||||||| ||||| ||||||||||  | ||||| ||||||||| |||||||||||||| ||||||| |||| |||    
T  12522118 aacccaaatcgacaacgcaatcatcggcgtcgcaatctgaatttccaccgccggaatcgcaaccctaactggtatgtgctcccctgttcatcgtttgaga 12522217  T
Q  224 actcagagaagaaagaaaa 242  Q
    ||| |||||||||||||||    
T  12522218 acttagagaagaaagaaaa 12522236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 42423690 - 42423475
Alignment:
Q  26 aaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaa 125  Q
    ||||||| ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||    
T  42423690 aaaaaaggaagtttcacaatttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaactaacaccaccaccgcaa 42423591  T
Q  126 ccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaac 225  Q
    ||||||| ||| |||||||||||||||||| ||||| |||||||||| |  ||||  ||||| ||| |||||||||||| ||||||||| |||| | |||    
T  42423590 ccctaactggcgtcgcaatcaccggcgtcgaaatctgaatttccaccgttggaat-gcaaccataactggtatgtgctctcatgttcatggtttgaaaac 42423492  T
Q  226 tcagagaagaaagaaaa 242  Q
    |||| ||||||||||||    
T  42423491 tcagggaagaaagaaaa 42423475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 12737688 - 12737863
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||||||||||||| ||||||||||    
T  12737688 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataatactatcttaaaaataaactagttaatttcttcaaaaggtcaacaaacacc 12737787  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaa 191  Q
    ||||| | ||||||||||  | ||||||||| |||| ||| ||||| ||||| |||| || ||||| |||||||||    
T  12737788 accactgcaaccctaaccaacgtcgcaatcatcggcatcgaaatctgaattttcaccgtcggaatcgcaaccctaa 12737863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 44977226 - 44977001
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||  ||||||| |    
T  44977226 aaaaccattcaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggt-tacaaacagc 44977128  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    || |||  ||||||||| ||  ||||  ||| | | |||| ||||| ||||| |||| ||||||||  ||| ||||  ||||||||||||| |||||||     
T  44977127 actaccacaaccctaactggtgtcgctctcatccgtgtcgaaatctgaattttcaccgtcagaatcgtaactctaacaggtatgtgctcccctgttcatg 44977028  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| |||||||| || ||||||||||    
T  44977027 gtttgagaactcatagtagaaagaaaa 44977001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 26 - 160
Target Start/End: Original strand, 27869555 - 27869688
Alignment:
Q  26 aaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaa 125  Q
    |||||| ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  27869555 aaaaaaacaagtttcacaagttcctaaagttgttaataaaactatctaaaa-ataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaa 27869653  T
Q  126 ccctaaccggcatcgcaatcaccggcgtcggaatc 160  Q
    |||||||||| || |||||||||||| ||| ||||    
T  27869654 ccctaaccgggattgcaatcaccggcatcgaaatc 27869688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 6387748 - 6387929
Alignment:
Q  61 ataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatc 160  Q
    ||||||||| | |||||||||||| | |||||||||||||| || | ||||||||||||||| ||||||||||  |||||||||||||||||| | ||||    
T  6387748 ataaaactatccaaaaaataaactggctaatttcttcaaaaagtcatcaaacaccaccaccgcaaccctaaccaacatcgcaatcaccggcgttgcaatc 6387847  T
Q  161 taaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaa 242  Q
      ||||||| |||||  |||| ||||||||| |  ||||||||| ||||||||| |||| |||||||||| |||||| ||||    
T  6387848 ggaatttcccccatcgaaatcgcaaccctaactaatatgtgctctcatgttcatggtttgagaactcagataagaaaaaaaa 6387929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 8029458 - 8029680
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||| |||| || |||||||||     
T  8029458 aaaaccatccaaaa-agcaagtttcacaagttcctaaaattgttaataaaactatctaaaaaataaactagttaatttctt-aaaaagtcaacaaacact 8029555  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||  |||||||               |||||||| | ||| | |||||| ||| || ||||| ||||  ||| |||||||||||||| ||||||||    
T  8029556 accaccacaacccta---------------accggcgtggaaatatgaatttctaccgtcggaatcgcaacattaactggtatgtgctcccctgttcata 8029640  T
Q  216 gtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
    |||| |||| ||||||||||||| |||| |||||||||||    
T  8029641 gtttgagaattcagagaagaaagaaaaagaaacgtttcat 8029680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 3007417 - 3007543
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccac 117  Q
    ||||||||||||||  |||||| |||||||| |||||||||| |||||||||  ||||||||||||||||||||||||||||| ||| |||||||| |||    
T  3007417 aaccatccaaaaaaa-aagttttacaagttcataaagttgttaataaaactatataaaaaataaactagttaatttcttcaaatggtcaacaaacaacac 3007515  T
Q  118 caccgaaaccctaaccggcatcgcaatc 145  Q
    ||||| ||| ||||||||||||| ||||    
T  3007516 caccgcaactctaaccggcatcgaaatc 3007543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 22 - 149
Target Start/End: Complemental strand, 24082688 - 24082561
Alignment:
Q  22 atccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccacc 121  Q
    ||||||||||||||||||||||||||| |||||||||| || |||||| ||||||||||||||| |||||||||||| ||||| | ||||||||||  ||    
T  24082688 atccaaaaaagcaagtttcacaagttcgtaaagttgttaattaaactatctaaaaaataaactacttaatttcttcagaaggtcatcaaacaccactgcc 24082589  T
Q  122 gaaaccctaaccggcatcgcaatcaccg 149  Q
    | || ||| ||| ||||| |||||||||    
T  24082588 gcaatccttaccagcatcacaatcaccg 24082561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 41394359 - 41394306
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  41394359 aaaaccatctaaaaaagcaagtttcacaagttcctaaagttgttaataaaacta 41394306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 6387506 - 6387559
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||||||    
T  6387506 aaaaccatccaaaaaagcaagtttcacaagtttataaagttgttaataaaacta 6387559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 33177492 - 33177560
Alignment:
Q  34 aagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||||||||||  |||||||||| ||||| ||| | ||||||||||||||||||||| ||||||||    
T  33177492 aagtttcacaagtttttaaagttgttaataaacctatccaaaaaataaactagttaattttttcaaaag 33177560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37131184 - 37131235
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||||||| |||||||||||||||||||||| ||||| |||||||||    
T  37131184 aaccatccaaaaaggcaagtttcacaagttcctaaaattgttaataaaacta 37131235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 24067321 - 24067259
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaa 82  Q
    |||||| |||||| ||||||||| |||||||||||||||||| |||||||||  |||||||||||    
T  24067321 aaccattcaaaaaggcaagtttctcaagttcctaaagttgttaataaaacta--taaaaaataaa 24067259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 35879885 - 35879824
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaat 79  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||||  ||||||||    
T  35879885 aaccatccaaaaaggcaagtttcacacgttcctaacgttgttaataaaactatataaaaaat 35879824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Complemental strand, 41394275 - 41394210
Alignment:
Q  177 gaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaa 242  Q
    ||||| ||||||||| |||||||||||||| |||||||  ||| |||||| |||||||||||||||    
T  41394275 gaatcgcaaccctaactggtatgtgctcccctgttcatgatttgagaacttagagaagaaagaaaa 41394210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 4870784 - 4870837
Alignment:
Q  50 taaagttgttgataaaacta-cctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||||||| ||||||||| || |||||||||||||||||||| |||||||||    
T  4870784 taaagttgttaataaaactatccaaaaaaataaactagttaattacttcaaaag 4870837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 7761006 - 7760953
Alignment:
Q  25 caaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaa 78  Q
    |||||| |||||||||||||||||||| ||||||| ||||||||| || |||||    
T  7761006 caaaaaggcaagtttcacaagttcctagagttgttaataaaactatcttaaaaa 7760953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 17234932 - 17234872
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaa 78  Q
    ||||||||||||| |||||||||||||||||  ||||||||| || |||||| | ||||||    
T  17234932 aaccatccaaaaaggcaagtttcacaagttcacaaagttgttaatcaaactatcaaaaaaa 17234872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 19484675 - 19484591
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| ||||||||||||||  |||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  19484675 ccatcccaaaaagaaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 19484591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 24966097 - 24966323
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||    
T  24966097 aaaaccatccaaaaaaacaagtttcacaagttcctaaagttgttaataaaactatctaaaaaacaaactagttaatttcttcaaaaggtcaacaaacacc 24966196  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||||||||| |||||| ||||||||| ||||||| |||||||| ||  |||| |||||||||||||||||| ||||||||||| |     
T  24966197 accaccgcaaccctaaccggcattgcaatctccggcgtcgaaatctaagtttccaccgtcgaaatcgcaaccctaattggtatgtactcccatgttcgtg 24966296  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| ||||||||||||||||||||||    
T  24966297 gtttgagaactcagagaagaaagaaaa 24966323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 33139291 - 33139064
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaa-taaactagttaatttcttcaaaaggtaaacaaacac 114  Q
    |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||    
T  33139291 aaaaccatccaaaatagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaaataaactagttaatttcttcaaaaggtcaacaaacac 33139192  T
Q  115 caccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcat 214  Q
    |||||||| ||||||||||||| | ||||||| ||| |||| ||||| |||||||||| || |||||||||||||||||||||| ||||||||||||| |    
T  33139191 caccaccgcaaccctaaccggcgttgcaatcatcggagtcgaaatctgaatttccaccgtcggaatcacaaccctaattggtatctgctcccatgttctt 33139092  T
Q  215 agtttcagaactcagagaagaaagaaaa 242  Q
    ||||| |||||||| | |||||||||||    
T  33139091 agtttgagaactcatataagaaagaaaa 33139064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 26 - 242
Target Start/End: Complemental strand, 32890361 - 32890146
Alignment:
Q  26 aaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaa 125  Q
    ||||||| |||||||| || |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  32890361 aaaaaaggaagtttcaaaatttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaa 32890262  T
Q  126 ccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaac 225  Q
    ||||||||||| |||||||||||| ||||| ||| | |||||||||| |  ||||  ||||| ||| |||||||||||||||||||||| |||| | |||    
T  32890261 ccctaaccggcgtcgcaatcaccgacgtcgaaatatgaatttccaccgttggaat-gcaaccataactggtatgtgctcccatgttcatggtttgaaaac 32890163  T
Q  226 tcagagaagaaagaaaa 242  Q
    |||| ||||||||||||    
T  32890162 tcagggaagaaagaaaa 32890146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 29509667 - 29509892
Alignment:
Q  17 aaaccatccaaaaaa-gcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||| | ||||||||||| ||||| |||||||| ||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||    
T  29509667 aaaccatccaaaaaaaggaagtttcacaatttccttaagttgttaataaaactatctaaaaaataaaccagttaatttcttcaaaaggtcaacaaacacc 29509766  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||| ||| |||||||||||||||| | | ||| |||||||||| |  ||||  ||||| ||| ||||| ||||||||||||||||     
T  29509767 accaccgcaaccctaactggcgtcgcaatcaccggcgttgaactctgaatttccaccgttggaat-gcaaccataactggtacgtgctcccatgttcatg 29509865  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| | ||||||  ||||||||||||    
T  29509866 gtttgaaaactcaaggaagaaagaaaa 29509892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 140
Target Start/End: Complemental strand, 50517606 - 50517486
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccacca 119  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50517606 ccatccaaaaaagcaaatttcacaagttcctaaagttgttaataaatccatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccacca 50517507  T
Q  120 ccgaaaccctaaccggcatcg 140  Q
    ||| |||||||||||||||||    
T  50517506 ccgcaaccctaaccggcatcg 50517486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 46287162 - 46286967
Alignment:
Q  61 ataaaactacctaaaaaa-taaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaat 159  Q
    ||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||||||| ||||||||||| | |||||||||| || |||| |||    
T  46287162 ataaaactatctaaaaaaataaactagttaatttcttcaaaaggtcaacaaacatcaccaccgcaaccctaaccgacgtcgcaatcacgggagtcgaaat 46287063  T
Q  160 ctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
     | |||||||| | |  ||||| ||||||||| |||||||||||||| | ||||| |||| ||||||| |||||||||| |||| |||||||||||    
T  46287062 ttgaatttccatcgttggaatcgcaaccctaactggtatgtgctcccttattcatggtttgagaactcggagaagaaagaaaaagaaacgtttcat 46286967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 46862550 - 46862762
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttc-aaaaggtaaacaaacac 114  Q
    |||| |||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||    
T  46862550 aaaatcatccaaaaaagcaagtttcacaagttcttaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaaggtcaacaaacac 46862649  T
Q  115 caccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcat 214  Q
     ||||||| |||||||               |||| ||||| ||||| |||||| ||| || ||||| ||||||||| | |||||||||||| |||||||    
T  46862650 taccaccgcaacccta---------------accgacgtcgaaatctgaatttctaccgtcggaatcgcaaccctaactagtatgtgctcccctgttcat 46862734  T
Q  215 agtttcagaactcagagaagaaagaaaa 242  Q
     |||| |||||||||| |||||| ||||    
T  46862735 ggtttgagaactcagaaaagaaaaaaaa 46862762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 26490881 - 26490942
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaa 77  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  26490881 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaa 26490942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 134
Target Start/End: Original strand, 35518147 - 35518232
Alignment:
Q  49 ctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaaccctaaccg 134  Q
    ||||||||||| |||||||||   || ||||||||||||||||||||||||||||| |||||| |||||||||| |||||||||||    
T  35518147 ctaaagttgttaataaaactattcaataaataaactagttaatttcttcaaaaggtcaacaaataccaccaccgcaaccctaaccg 35518232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 53574002 - 53574150
Alignment:
Q  106 aacaaacaccaccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcc 205  Q
    ||||||||||||||||| |||| |||||||| | ||||||| |   |||| ||||  |||||||||| || |||||| |||||||| |||||| |||| |    
T  53574002 aacaaacaccaccaccgcaacc-taaccggcgtagcaatcaacaatgtcgaaatcggaatttccaccgtcggaatcagaaccctaactggtatatgctac 53574100  T
Q  206 catgttcatagtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
    | ||||||| |||| |||||||||||||||||| |||| |||||||||||    
T  53574101 cctgttcatggtttgagaactcagagaagaaagaaaaagaaacgtttcat 53574150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 40317279 - 40317363
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||||| ||||| ||||||||| ||||| |||||||| || ||||| |||   ||||||| ||||||||||||||||||||||    
T  40317279 aaccatccgaaaaaccaagtttcagaagtttctaaagttattaataaatctattcaaaaaatgaactagttaatttcttcaaaag 40317363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 40327353 - 40327437
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||||| ||||| ||||||||| ||||| |||||||| || ||||| |||   ||||||| ||||||||||||||||||||||    
T  40327353 aaccatccgaaaaaccaagtttcagaagtttctaaagttattaataaatctattcaaaaaatgaactagttaatttcttcaaaag 40327437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 24454086 - 24454025
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaat 79  Q
    ||||||||||||| |||||||||||| |||||||| |||||| |||||||||  ||||||||    
T  24454086 aaccatccaaaaaggcaagtttcacacgttcctaacgttgttaataaaactatataaaaaat 24454025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 25842621 - 25842674
Alignment:
Q  49 ctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||||||| ||||| ||| | ||||||||||||||||||||||||||||||    
T  25842621 ctaaagttgttaataaagctatccaaaaaataaactagttaatttcttcaaaag 25842674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 872014 - 871954
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaa 78  Q
    ||||||||||||| |||| ||||||||||||||||| ||||| ||||||||| | ||||||    
T  872014 aaccatccaaaaaggcaaatttcacaagttcctaaatttgttaataaaactatccaaaaaa 871954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 17503527 - 17503569
Alignment:
Q  184 aaccctaattggtatgtgctcccatgttcatagtttcagaact 226  Q
    ||||||||||||||||||||||||||||||| |||| ||||||    
T  17503527 aaccctaattggtatgtgctcccatgttcatggtttgagaact 17503569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 26955747 - 26955687
Alignment:
Q  42 caagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||| |||||||| || ||||||||| | ||||||||||| | ||||||||||||||||    
T  26955747 caagtttctaaagtttttaataaaactatccaaaaaataaacaatttaatttcttcaaaag 26955687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 106 - 145
Target Start/End: Original strand, 17503465 - 17503504
Alignment:
Q  106 aacaaacaccaccaccgaaaccctaaccggcatcgcaatc 145  Q
    ||||||||||||||||| ||||||||||||| ||||||||    
T  17503465 aacaaacaccaccaccgcaaccctaaccggcttcgcaatc 17503504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 42937220 - 42937298
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttca 98  Q
    |||||| |||||| |||||||||||||| ||||| |||   ||||||||| | |||||| ||| ||| |||||||||||    
T  42937220 ccatcccaaaaagaaagtttcacaagtttctaaacttgagaataaaactatccaaaaaacaaattaggtaatttcttca 42937298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 21306005 - 21306073
Alignment:
Q  17 aaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaacta 85  Q
    |||||||||||||||||||| | ||||||||  |||| || || ||||||| | | |||||||||||||    
T  21306005 aaaccatccaaaaaagcaagatacacaagtttttaaatttattaataaaaccatccaaaaaataaacta 21306073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 29469625 - 29469541
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||  ||||||||||||||  |||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  29469625 ccatcccaaaaacaaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 29469541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 151; Significance: 5e-80; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 16439196 - 16438971
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  16439196 aaaaccatccaaaaaagcaagtttcacaagtttctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacacc 16439097  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||| | ||||||||||  | |||||||||||||||||| |||||||||||||||  |||| ||| ||||||||| ||||||||||||||||||||||     
T  16439096 accactgcaaccctaaccaacgtcgcaatcaccggcgtcgaaatctaaatttccactgtcag-atcgcaaccctaactggtatgtgctcccatgttcatg 16438998  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| ||||||| ||||||||||||||    
T  16438997 gtttgagaactccgagaagaaagaaaa 16438971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 33640878 - 33641103
Alignment:
Q  17 aaaccatccaaaaaa-gcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||| | ||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||    
T  33640878 aaaccatccaaaaaaaggaagtttcacaatttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaactaacacc 33640977  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| |||||||||  || |||||||||||| ||||| ||||| |||||||||| |  ||||  ||||| ||| ||||||||||||||||||||||     
T  33640978 accaccgcaaccctaacttgcgtcgcaatcaccgacgtcgaaatctgaatttccaccgttggaat-gcaaccataactggtatgtgctcccatgttcatg 33641076  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| | ||||||| ||||||||||||    
T  33641077 gtttgaaaactcagggaagaaagaaaa 33641103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 28900436 - 28900661
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||     
T  28900436 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggacaacaaacact 28900535  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattgg----tatgtgctcccatgtt 211  Q
    |||||   ||||||||||||  ||||||| | |||||| | ||| | |||||||||| ||  |||||||||||||| |||    ||||||||||| ||||    
T  28900536 accacaacaaccctaaccggtgtcgcaataaacggcgttgaaatatgaatttccaccgtcgaaatcacaaccctaactggtatatatgtgctcccctgtt 28900635  T
Q  212 catagtttcagaactcagagaagaaa 237  Q
    ||| |||| |||||||||||||||||    
T  28900636 catggtttgagaactcagagaagaaa 28900661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 2607403 - 2607177
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||| ||||||||||||||||||| ||||||| ||||||||||| | ||||||| |||||||| |||||||||||||| |||||||||| |||||||||     
T  2607403 aaaatcatccaaaaaagcaagttttacaagtttctaaagttgttaaaaaaactatctaaaaaagaaactagttaattttttcaaaaggtcaacaaacact 2607304  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||  ||||||||||||| ||||||||||||  |||| ||| | |||||||||| || ||||| |||  |||| |||||||||||| |||||||||     
T  2607303 accaccacaaccctaaccggcgtcgcaatcaccgatgtcgaaatatgaatttccaccgtcggaatcgcaatgctaactggtatgtgctctcatgttcatg 2607204  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| |||||||| |||||||||||||    
T  2607203 gtttgagaactcatagaagaaagaaaa 2607177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 24194967 - 24194742
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||| | ||||| ||    
T  24194967 aaaaccatccaaaaaagaaagtttcacaaattcctaaagttgttattaaaactatctaaaaaataaactagttaatttcttcaaaaggtcagcaaactcc 24194868  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| || ||||||| |  | | |||||||| ||||  ||| | |||||||||| || || || ||||||||| |||||| |||||||||||||||     
T  24194867 accaccgcaatcctaaccagtgttgtaatcaccgacgtcaaaatatgaatttccaccgtcggagtcgcaaccctaactggtatatgctcccatgttcatg 24194768  T
Q  216 gtttcagaactcagagaagaaagaaa 241  Q
    |||| |||||| | ||||||| ||||    
T  24194767 gtttgagaacttatagaagaaggaaa 24194742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 254
Target Start/End: Original strand, 31534729 - 31534927
Alignment:
Q  42 caagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaaccctaaccggcatcgc 141  Q
    |||||| ||||||||||| ||||||||| |||| |||||||||| |||||||||||||||| | |||||||||||  |||| |||||||               
T  31534729 caagtttctaaagttgttaataaaactatctaagaaataaactacttaatttcttcaaaagatcaacaaacaccatgaccgcaacccta----------- 31534817  T
Q  142 aatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaag-aa 240  Q
        | |||||||| ||||| |||||||||| ||  |||| ||||||||| || ||||||||| | ||||||| |||| |||||||||||||||||| ||    
T  31534818 ----atcggcgtcgaaatctgaatttccaccgtcgaaatcgcaaccctaactgatatgtgctctcttgttcatggtttgagaactcagagaagaaagtaa 31534913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 31975358 - 31975484
Alignment:
Q  129 taaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactca 228  Q
    ||||| || ||| ||||||||| |||  ||| | |||||||||| || ||||| ||||||||| |||||||||||||| ||||||| |||| |||||| |    
T  31975358 taaccagcgtcgtaatcaccggtgtcaaaatatgaatttccaccttcggaatcgcaaccctaactggtatgtgctcccctgttcatggtttgagaactta 31975457  T
Q  229 gagaagaaag-aaaacaaacgtttcat 254  Q
    |||||||||| |||| |||||||||||    
T  31975458 gagaagaaagaaaaaaaaacgtttcat 31975484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 21010521 - 21010605
Alignment:
Q  17 aaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||||||||||||  |||||||||||||| ||||||||||| || || ||| | |||  |||||||||||||||||||||||||    
T  21010521 aaaccatccaaaaaat-aagtttcacaagtttctaaagttgttaattaacctatcaaaattataaactagttaatttcttcaaaag 21010605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 15381210 - 15381268
Alignment:
Q  42 caagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaa 100  Q
    |||||| ||||| ||||| ||||||||| | ||||||||||| ||||||||||||||||    
T  15381210 caagtttctaaaattgttaataaaactatccaaaaaataaacaagttaatttcttcaaa 15381268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 143; Significance: 3e-75; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 16710033 - 16709807
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||| |||||||| |    
T  16710033 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataagactatctaaaaaataaacaagttaatttcttcaaaaggtcaacaaacatc 16709934  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||| ||  |||||||||||| ||| | ||||| |||||||||| || ||||| ||||||||| |||||||||||||| |||||||     
T  16709933 accaccgcaaccctaactggtgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccctgttcatg 16709834  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| ||||||||||||||||||||||    
T  16709833 gtttgagaactcagagaagaaagaaaa 16709807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 17684269 - 17684043
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| |||||||||||||||||||| |||||||| |    
T  17684269 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataagactatctaaaaaataaacaagttaatttcttcaaaaggtcaacaaacatc 17684170  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||| ||  |||||||||||| ||| | ||||| |||||||||| || ||||| ||||||||| |||||||||||||| |||||||     
T  17684169 accaccgcaaccctaactggtgtcgcaatcaccgacgttgaaatctgaatttccaccgtcggaatcgcaaccctaactggtatgtgctcccctgttcatg 17684070  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| ||||||||||||||||||||||    
T  17684069 gtttgagaactcagagaagaaagaaaa 17684043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 43172561 - 43172335
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||| |||||    
T  43172561 aaaaccatccaaaaaagcaagtttcacaagttcgtaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacagacacc 43172462  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||||||  ||||||||| |||||||| ||||| |||||||| | |||||||| ||||||||| |||||||||||||| | |||||     
T  43172461 accaccgcaaccctaaccggtgtcgcaatcatcggcgtcgaaatctgaatttccatcgtcagaatcgcaaccctaactggtatgtgctcccctattcatg 43172362  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    | || |||||| |||||||||||||||    
T  43172361 gattgagaacttagagaagaaagaaaa 43172335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 23017479 - 23017255
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||    
T  23017479 aaaaccatccaaaaaagcaagtttcacaagtttctaaagttgttaataaaactatctaaaaaataaactagttaattttttcaaaaggtcaacaaacacc 23017380  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| |||||||| ||||||  |||             ||||| |||||||||| |||||||| ||||||||| ||||||||| ||||||||||||     
T  23017379 accaccgcaaccctaatcggcat--caa-------------aatctgaatttccaccgtcagaatcgcaaccctaactggtatgtggtcccatgttcatg 23017295  T
Q  216 gtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
    |||| |||||||||||||||||| |||| |||||||||||    
T  23017294 gtttgagaactcagagaagaaagaaaaagaaacgtttcat 23017255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 21486632 - 21486404
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacct-aaaaaataaactagttaatttcttcaaaaggtaaacaaacac 114  Q
    ||||| |||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| |||||||||| |||||||||    
T  21486632 aaaactatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaaataaactagttaattttttcaaaaggtcaacaaacac 21486533  T
Q  115 caccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcat 214  Q
    |||||| | || ||||               |||||||||| ||||| |||||||| | || ||||||||||||||| | ||||||||| || |||||||    
T  21486532 caccactgcaatccta---------------accggcgtcgaaatctgaatttccatcgtcggaatcacaaccctaactagtatgtgcttccctgttcat 21486448  T
Q  215 agtttcagaactcagagaagaaag-aaaacaaacgtttcatctc 257  Q
     |||| || ||| ||||||||||| |||| ||||||||||||||    
T  21486447 ggtttgaggacttagagaagaaagaaaaagaaacgtttcatctc 21486404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 42611007 - 42610887
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||| || |||||||||||| |||||||||| ||||||||||    
T  42611007 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaaccatctaaaaactagactagttaattttttcaaaaggtcaacaaacacc 42610908  T
Q  116 accaccgaaaccctaaccggc 136  Q
    ||||||| || ||||| ||||    
T  42610907 accaccgtaatcctaatcggc 42610887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 43 - 242
Target Start/End: Original strand, 5771747 - 5771945
Alignment:
Q  43 aagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaaccctaaccggcatcgca 142  Q
    |||||| ||||||| || ||||||||| | |||||||||||| ||||||||||||||||||| | |||||||||||| || ||| |||||| || || |     
T  5771747 aagttcgtaaagtttttaataaaactatcaaaaaaataaact-gttaatttcttcaaaaggtcatcaaacaccaccatcgcaactctaaccagcgtcacg 5771845  T
Q  143 atcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaa 242  Q
    |||||||| || | | ||  ||||||| |  || |||||  |||||||| |||||||||||| |||||||||  ||| |||||||||| |||||||||||    
T  5771846 atcaccggtgttgcagtcagaatttcccctgtcggaatcgtaaccctaactggtatgtgctctcatgttcatcttttgagaactcagataagaaagaaaa 5771945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 31445840 - 31445773
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaac 83  Q
    ||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  31445840 aaaaccatccaaaaatgcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaac 31445773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 6268941 - 6268856
Alignment:
Q  17 aaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||| ||||||| ||||||||||||||| ||||||||||| ||||| |||   || ||| |||||||||||||| ||||||||    
T  6268941 aaaccattcaaaaaaacaagtttcacaagtttctaaagttgttaataaacctattcaagaaacaaactagttaattttttcaaaag 6268856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 33496988 - 33497039
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||||||  |||||||||||||||||||||||||||| |||||||||    
T  33496988 aaccatccaaaatggcaagtttcacaagttcctaaagttgttaataaaacta 33497039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 14741913 - 14741829
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| |||||||||||||| ||||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  14741913 ccatcccaaaaagaaagtttcacaagtttctaaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 14741829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 4639513 - 4639597
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| ||||||||||||||  |||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  4639513 ccatcccaaaaagaaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 4639597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 39 - 102
Target Start/End: Original strand, 1254147 - 1254210
Alignment:
Q  39 tcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||| || ||||||||||| ||||| ||| | |||||||||| |||||| ||||||||||||    
T  1254147 tcacaaatttctaaagttgttaataaacctatccaaaaaataaattagttagtttcttcaaaag 1254210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 42043803 - 42043751
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||||||||||||||| |||||| ||| ||| ||||||| |||||||||    
T  42043803 aaaaccatccaaaaaagcaag-ttcacatgtttctagagttgttaataaaacta 42043751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 26201686 - 26201734
Alignment:
Q  21 catccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    |||| ||||| || ||||||||||||||||||| ||||| |||||||||    
T  26201686 catctaaaaaggctagtttcacaagttcctaaaattgttaataaaacta 26201734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 47371174 - 47371400
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||| ||||||||||||||||||||||||| ||| ||||||    
T  47371174 aaaaccatccaaaaaagcaagtttcacaagttcttaaagttgttaataaaacaatctaaaaaacaaactagttaatttcttcaaaaggtcaacgaacacc 47371273  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||| ||  ||||||||||||||| |||||||||||||||| ||||||| |||||||| ||  |||  |||||||||||||||||||||||||||||| |     
T  47371274 accgccacaaccctaaccggcattgcaatcaccggcgtcgaaatctaagtttccaccgtcgaaattgcaaccctaattggtatgtgctcccatgttcgtg 47371373  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| ||||||||||||||||||||||    
T  47371374 gtttgagaactcagagaagaaagaaaa 47371400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 3593732 - 3593506
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||||| ||||||||||||| | |||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  3593732 aaaaccatccaaaaaagtaagtttcacaagtccgtaaagttgttaataaaactatctaaaaaataaacttgttaatttcttcaaaaggtaaacaaacacc 3593633  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    | ||||| ||||||||||||  |||||||||  ||||||| ||||| |||||||||  ||||||||||||| |||| || ||||||||||| | |||||     
T  3593632 aacaccgcaaccctaaccggtgtcgcaatcattggcgtcgaaatctgaatttccactgtcagaatcacaacactaactgatatgtgctcccctattcatg 3593533  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    | || |||||| |||||||||||||||    
T  3593532 gattgagaacttagagaagaaagaaaa 3593506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 32759706 - 32759932
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||| ||||||| ||||||||  ||| ||||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||    
T  32759706 aaaaccatccaaaaaaccaagttttacaagttcaaaaaattgttaataaaactatctaaaaaataaactagttaatttcttcaaatggtcaacaaacacc 32759805  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||| ||| |||||||||||   |||||||||||||||||| ||||| ||||| |||| || ||||| ||||||||| || ||||||||||| |||||||     
T  32759806 acccccgcaaccctaaccgatgtcgcaatcaccggcgtcgaaatctgaattttcaccgtcggaatcgcaaccctaactgatatgtgctcccttgttcatg 32759905  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| ||||||||||||||||||||||    
T  32759906 gtttgagaactcagagaagaaagaaaa 32759932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 49236602 - 49236828
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |||||| |||    
T  49236602 aaaaccatccaaaaaagaaagtttcataagttcctaaagttgttaataaaactatctaaaaaataaactagttaatttctttaaaaggtcaacaaatacc 49236701  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||| | |||| ||||| || | ||||||| || ||||| ||||| ||||| |||| ||  |||| ||||||||||||||||||||||||||||||||     
T  49236702 accacagcaaccataaccagcgttgcaatcatcgacgtcgaaatctgaattttcaccgtcgaaatcgcaaccctaattggtatgtgctcccatgttcatg 49236801  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| |||||| |||||||||||||||    
T  49236802 gtttgagaacttagagaagaaagaaaa 49236828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 42303985 - 42304207
Alignment:
Q  16 aaaaccatccaaaaaa-gcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacac 114  Q
    |||||||||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||| |||||||||||||||||| || |||||||||    
T  42303985 aaaaccatccaaaaaaagaaagtttcacaagttcctaaagttattaataaaactatctaaaaaataaagtagttaatttcttcaaaacgtcaacaaacac 42304084  T
Q  115 caccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcat 214  Q
    ||||||   |||||||||| |  || ||||||||||||| | ||| | |||||||||| || ||||||||||||||| |||||||||||||| |||||||    
T  42304085 caccacaacaaccctaaccagtgtcacaatcaccggcgttgaaatatgaatttccaccgtctgaatcacaaccctaaatggtatgtgctcccctgttcat 42304184  T
Q  215 agtttcagaactcagagaagaaa 237  Q
     |||| |||||| ||| ||||||    
T  42304185 ggtttgagaacttagaaaagaaa 42304207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 16 - 214
Target Start/End: Original strand, 35176872 - 35177071
Alignment:
Q  16 aaaaccatccaaaa-aagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacac 114  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||| ||||||||| ||||||| |||| |||| |||||||||||||||| |||||||||    
T  35176872 aaaaccatccaaaaaaagcaagtttcacaagttcataatgttgttaataaaactatctaaaaattaaattagtgaatttcttcaaaaggtcaacaaacac 35176971  T
Q  115 caccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcat 214  Q
    ||||| || ||||||||||||| |||||||||||| ||||| ||||| |||||||||| || ||||| ||||||| | ||||||| |||||  |||||||    
T  35176972 caccaacgtaaccctaaccggcgtcgcaatcaccgacgtcgaaatctgaatttccaccgtcggaatcgcaaccctcactggtatgcgctcctctgttcat 35177071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 49452665 - 49452860
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||| ||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| |  |||||||||     
T  49452665 aaaaccatccaaaaaa-caagtttcacaagttcctaaatttgttaataaaactatctaaaaaataaactagttaatttcttcaaaacgacaacaaacact 49452763  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttc 212  Q
    ||||||| ||||||||||||| ||||||| | |||||||| ||| | | |||||||| |  ||||| ||||||||| |||||| ||||||| |||||    
T  49452764 accaccgcaaccctaaccggcgtcgcaataaacggcgtcgaaatatgactttccaccgttggaatcgcaaccctaactggtatatgctcccctgttc 49452860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 25254026 - 25253797
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataa---actagttaatttcttcaaaaggtaaacaaac 112  Q
    ||||||||| |||| | |||||||| |||||| | ||||||||| ||||||||| |||||||||||   ||||||||||||||||||||||| |||||||    
T  25254026 aaaaccatcaaaaataacaagtttctcaagtttccaaagttgttaataaaactatctaaaaaataataaactagttaatttcttcaaaaggtcaacaaac 25253927  T
Q  113 accaccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttc 212  Q
    |||||||||| |||||||   | | |||||||||||||||||| ||| | |||||||||| |  || || |||||||||  ||||||| ||||| | |||    
T  25253926 accaccaccgcaaccctatttgacgtcgcaatcaccggcgtcgaaatatgaatttccaccgttggattcgcaaccctaaccggtatgtactcccttattc 25253827  T
Q  213 atagtttcagaactcagagaagaaagaaaa 242  Q
    |  |||| |||||||  | |||||||||||    
T  25253826 aaggtttgagaactcgaaaaagaaagaaaa 25253797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 136
Target Start/End: Original strand, 28403583 - 28403705
Alignment:
Q  16 aaaaccatccaaaaaag--caagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaaca 113  Q
    ||||||||||||||||   ||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| ||||||||    
T  28403583 aaaaccatccaaaaaaaatcaagtttcacaagttcctaaagttgttaataaaactatttaaaaaataaactagttaatttcttcaaaaggtcaacaaaca 28403682  T
Q  114 ccaccaccgaaaccctaaccggc 136  Q
    |||| |||| || ||||||||||    
T  28403683 ccactaccgcaatcctaaccggc 28403705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 95
Target Start/End: Complemental strand, 19863353 - 19863274
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttct 95  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||    
T  19863353 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactagtaaatttct 19863274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 61 - 242
Target Start/End: Original strand, 48966155 - 48966321
Alignment:
Q  61 ataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacaccaccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatc 160  Q
    ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||               | ||| |||| |||     
T  48966155 ataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacaccaccaccgcaacccta---------------atcggtgtcgaaatt 48966239  T
Q  161 taaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaa 242  Q
    | |||||||||| || ||||  ||||| ||| | |||||||||||||||||||| |||| |||||| |||||||||||||||    
T  48966240 tgaatttccaccgtcggaattgcaaccataactagtatgtgctcccatgttcatggtttgagaacttagagaagaaagaaaa 48966321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 46042383 - 46042298
Alignment:
Q  17 aaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||||||||||||| ||||||||||| || ||||||||||| ||||| ||| | |||||||||||||||||||||| |||||||    
T  46042383 aaaccatccaaaaaagtaagtttcacaattttctaaagttgttaataaacctatccaaaaaataaactagttaatttcgtcaaaag 46042298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 226396 - 226321
Alignment:
Q  27 aaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||    
T  226396 aaaaagcaagtttcataagtttctaaagttgttaataaacctatctaaaaaataaactagttaattttttcaaaag 226321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 52182542 - 52182491
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||||||||| ||| |||||||||||||||||||||| |||||||||    
T  52182542 aaccatccaaaaaagtaagcttcacaagttcctaaagttgttaataaaacta 52182491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 42637749 - 42637835
Alignment:
Q  17 aaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataa-aactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||||||||||||||||||| |||||||| ||||||||||| |||| |  | |  |||||| ||||||| |||||||||||||||    
T  42637749 aaaccatccaaaaaagcaagttgcacaagtttctaaagttgttaataacatatccaaaaaaaagaaactagctaatttcttcaaaag 42637835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 1242920 - 1243004
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| |||||||||||||| ||||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  1242920 ccatcccaaaaagaaagtttcacaagtttctaaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 1243004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 49971490 - 49971528
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagtt 56  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  49971490 aaccatccaaaaaggcaagtttcacaagttcctaaagtt 49971528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 41353903 - 41353819
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| ||||||||||||||  |||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  41353903 ccatcccaaaaagaaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 41353819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 28403731 - 28403809
Alignment:
Q  177 gaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaa-gaaaacaaacgtttcat 254  Q
    |||||| |||||||| |  ||||||||||| ||||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  28403731 gaatcataaccctaacttttatgtgctcccctgttcatggtttgagaactcagtgaagaaataaaaagaaacgtttcat 28403809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 16 - 254
Target Start/End: Original strand, 31846772 - 31847011
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||| ||||||||||||||  |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  31846772 aaaaccatctaaaaaagcaagttttgcaagttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacacc 31846871  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| |||||||||  || |||||||||| ||||| | |||||||||||||| | || ||||| ||||||||| |||||||||||||| |||| ||     
T  31846872 accaccgcaaccctaacaagcgtcgcaatcactggcgttgaaatctaaatttccatcgtcggaatcgcaaccctaactggtatgtgctcccctgtttatg 31846971  T
Q  216 gtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
    |||| ||||||||||||| |||| |||| |||||||||||    
T  31846972 gtttgagaactcagagaaaaaagaaaaagaaacgtttcat 31847011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 20 - 254
Target Start/End: Original strand, 38295332 - 38295568
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaa-ggtaaacaaacaccacc 118  Q
    ||||||||||||| ||||||||||| |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||| ||| | |||||||||||    
T  38295332 ccatccaaaaaagaaagtttcacaaattcctaaagttgctaataaaactatctaaaaaataaactagttaatttcttcaaaaaggtcagcaaacaccacc 38295431  T
Q  119 accgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtt 218  Q
    |||| ||||||||||||| || ||||||||| | ||| ||| | |||||||||  || ||||| ||||||||| |||||||||||||| |||| || |||    
T  38295432 accgcaaccctaaccggcgtcacaatcaccgacatcgaaatatgaatttccacagtcggaatcgcaaccctaactggtatgtgctcccctgtttatggtt 38295531  T
Q  219 tcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
    | |||||||||||||||||| |||| |||||||||||    
T  38295532 tgagaactcagagaagaaagaaaaagaaacgtttcat 38295568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 257
Target Start/End: Complemental strand, 40830128 - 40829887
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||| ||||||||||||||||||||||||||||||| ||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |||||||||     
T  40830128 aaaatcatccaaaaaagcaagtttcacaagttcctatagttgttaataaaaccatctaaaacataaactagttaatttcttcaaaaggtcaacaaacact 40830029  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||| | |||||||||| || ||||||||| | |||| | ||||| |||||||||| ||| |||| ||||||||| |||||  ||||||| |||||||     
T  40830028 accactgcaaccctaacc-gcgtcgcaatcatcagcgtggaaatctgaatttccaccgtcaaaatcgcaaccctaactggtacatgctcccctgttcatg 40829930  T
Q  216 gtttcagaactcagagaagaaag-aaaacaaacgtttcatctc 257  Q
    |||| |||||| ||||||||||| |||| ||||||||||||||    
T  40829929 gtttgagaacttagagaagaaagaaaaagaaacgtttcatctc 40829887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 34342739 - 34342500
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||| |||||||| |||||||||||||||||   ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||    
T  34342739 aaaactatccaaaatagcaagtttcacaagttttcaaagttgttaataaaactatctaaaaaataaactagttaatttcttgaaaaggtcaacaaacacc 34342640  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||  ||||||||||| | ||||||| ||| |||||| ||| | |||||||||| |  ||||| ||||||||| |||||||||||||| | |||||     
T  34342639 accaccacaaccctaaccgacgtcgcaattaccagcgtcgaaatatgaatttccaccgttggaatcgcaaccctaactggtatgtgctcccttattcatg 34342540  T
Q  216 gtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
    |||| ||||||| |||||||||| |||| |||||||||||    
T  34342539 gtttgagaactcggagaagaaagaaaaagaaacgtttcat 34342500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 18727247 - 18727484
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||||||||| ||||||||||| |||||||||| |||||||||   ||||||| ||||||||||||||||||||||||   ||||||||    
T  18727247 aaaaccatccaaaaaagcaaggttcacaagttcgtaaagttgttaataaaactattcaaaaaatcaactagttaatttcttcaaaaggtcgtcaaacacc 18727346  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||| |||| || || |||||| ||| |||| |||| |||||| | ||||| ||||| |||||||||||||||||||||| | |||||||     
T  18727347 accaccgcaaccccaaccagcgtcacaatcatcggtgtcgcaatcgaaatttaccccatcggaatcgcaaccctaattggtatgtgctctcttgttcatg 18727446  T
Q  216 gtttcagaactcagagaagaaag-aaaacaaacgtttc 252  Q
    |||| |||||||||| ||| ||| |||| |||||||||    
T  18727447 gtttaagaactcagataaggaagtaaaaaaaacgtttc 18727484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 9731439 - 9731286
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||| |||||||||||| || ||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||    
T  9731439 aaaaccatccaaaaaa-caagtttcacaaattactaaagttgttaataaaactatctaaaaaataaactaattaatttcttcaaaaggtcaacaaacacc 9731341  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttcca 170  Q
    ||||||| |||||||| |||| ||||||||| || ||||  ||||| ||||||||    
T  9731340 accaccgcaaccctaatcggcgtcgcaatcatcgacgtcaaaatctgaatttcca 9731286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 32294348 - 32294264
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  32294348 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatccaaaaaataaactagttaatttcttcaaaag 32294264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 37810497 - 37810582
Alignment:
Q  17 aaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||||| ||| || |||||||||| |||  |||||||||| ||||| ||| | ||||||||||||||||||||||||||||||    
T  37810497 aaaccatccgaaagagtaagtttcacatgttgataaagttgttaataaacctatccaaaaaataaactagttaatttcttcaaaag 37810582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 24026280 - 24026204
Alignment:
Q  22 atccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||| |||||||||||||||     ||||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  24026280 atccaataaagcaagtttcacat----ctaaagttgttaataaaactatccaaaaaataaactagttaatttcttcaaaag 24026204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 3858307 - 3858367
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaa 78  Q
    ||||||||||||| |||||||||||||||||||| ||||||| ||||||||| | ||||||    
T  3858307 aaccatccaaaaaggcaagtttcacaagttcctatagttgttaataaaactatccaaaaaa 3858367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 15926541 - 15926490
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||||||| |||||||||||| ||||||||||||||| |||||||||    
T  15926541 aaccatccaaaaaggcaagtttcacatgttcctaaagttgttaataaaacta 15926490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 43617960 - 43617911
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaac 67  Q
    ||||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  43617960 aaccatccaaaaaggcaagtttcacaagtttctaaagttgttaataaaac 43617911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 18899542 - 18899626
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| |||||||||||||| ||||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  18899542 ccatcccaaaaagaaagtttcacaagtttctaaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 18899626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 2308172 - 2308212
Alignment:
Q  27 aaaaagcaagtttcacaagttcctaaagttgttgataaaac 67  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  2308172 aaaaaacaagtttcacaagttcctaaagttgttaataaaac 2308212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 32294444 - 32294494
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||| |||||| ||||||||||||||||||||| ||||| |||||||||    
T  32294444 aaccatcaaaaaaatcaagtttcacaagttcctaaa-ttgttaataaaacta 32294494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 102
Target Start/End: Complemental strand, 30850853 - 30850793
Alignment:
Q  42 caagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    |||||| ||||||||||| ||||||||| | | ||||||| | ||||||||| ||||||||    
T  30850853 caagtttctaaagttgttaataaaactatccataaaataaccaagttaatttattcaaaag 30850793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 16 - 236
Target Start/End: Original strand, 4962315 - 4962535
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  4962315 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgtcaataaaactatctaaaaaataaactagttaatttcttcaaaaggttaacaaacacc 4962414  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||||  | ||||||||| ||  |||| ||  | |||||||||| || ||||| || |||||| || ||||||||||| |||||||     
T  4962415 accaccgcaaccctaaccaacgtcgcaatcatcgatgtcgaaacatgaatttccaccgtctgaatcgcagccctaactgatatgtgctcccctgttcatg 4962514  T
Q  216 gtttcagaactcagagaagaa 236  Q
    |||| ||||||||||||||||    
T  4962515 gtttgagaactcagagaagaa 4962535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 43173398 - 43173159
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||    
T  43173398 aaaaccatccaaaaaagcaagtttcaccagttcctaaagttgttaataaaactatctaaaaaataaattagttaatttcttcaaaaggtcaacaaacacc 43173299  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
     || ||| ||||||||||||||||||||||||| |||||| ||| | | |||| | | || ||||| |||| |||| |||||||||||||| | |||||     
T  43173298 gccgccgcaaccctaaccggcatcgcaatcaccagcgtcgaaatatgagtttctatcgtcggaatcgcaactctaactggtatgtgctcccctattcatg 43173199  T
Q  216 gtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
    |||| | |||| ||||||||||| |||| |||||||||||    
T  43173198 gtttgaaaacttagagaagaaagaaaaagaaacgtttcat 43173159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 49458861 - 49458640
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||     
T  49458861 aaaaccatccaaaaaatcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaaacact 49458762  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||  |||||||||||||  ||||||||||| |||||  || | |||||||||| || |     ||||||||| ||||||||||| |||| |||||     
T  49458761 accaccacaaccctaaccggcgacgcaatcaccgacgtcgatatatgaatttccaccgtcgg-----caaccctaactggtatgtgcttccattttcatg 49458667  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| |||||||||||| |||||||||    
T  49458666 gtttgagaactcagagaggaaagaaaa 49458640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 33693761 - 33693535
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||| ||||||||||    
T  33693761 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactacttaatttcttcaaaaggtcaacaaacacc 33693662  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||| | |||| ||  |||| |||||||||| ||| | | ||||| ||||| | || ||  ||| |||||| ||| ||||||||||| || |||||||     
T  33693661 accactgcaaccgtagtcggcgtcgcaatcacaggcattgaaatctgaattttccccgtcgaaattacaaccataactggtatgtgcttccctgttcatg 33693562  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| |||| |||||||||||||||||    
T  33693561 gtttgagaattcagagaagaaagaaaa 33693535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 21386093 - 21386319
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||| |||||||||||||||||||||| |||||||||| ||||||||  | |||||||||||||||||||||||||||||||| | ||||||||    
T  21386093 aaaaccatccgaaaaagcaagtttcacaagttcgtaaagttgttaataaaactgtccaaaaaataaactagttaatttcttcaaaaggtcatcaaacacc 21386192  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||||  ||||   | ||||| ||||| ||||  ||||||| || || |||||  |||||||| |||||||||||| |||||| ||     
T  21386193 accaccgcaaccctaaccaacatccttaacaccgacgtcgcaatcggaatttcccccgtcggaatcgtaaccctaactggtatgtgctctcatgtttatg 21386292  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
     ||| |||||||||| || ||||||||    
T  21386293 ttttaagaactcagataaaaaagaaaa 21386319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 16 - 172
Target Start/End: Original strand, 7437154 - 7437309
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||| ||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||||    
T  7437154 aaaaccatccaaaaaa-caagtttaacaagttcctaaagttgttaataaaactatctaaaaaataaactagttaattacttcaaaaagtaaacaaacacc 7437252  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccacc 172  Q
    ||||||| ||| |||||| || |||||||||| | ||||| ||||| ||||||||||    
T  7437253 accaccgcaactctaaccagcgtcgcaatcactgacgtcgaaatctgaatttccacc 7437309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 131 - 242
Target Start/End: Complemental strand, 16155529 - 16155418
Alignment:
Q  131 accggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcatagtttcagaactcaga 230  Q
    |||||| ||| ||||||||| |||| |||||||||||||||  || ||||  ||||||||| |||||||||||||| |||| || |||| ||||||||||    
T  16155529 accggcgtcgtaatcaccggtgtcgaaatctaaatttccactgtcggaattgcaaccctaactggtatgtgctcccctgttgatggtttgagaactcaga 16155430  T
Q  231 gaagaaagaaaa 242  Q
    ||||||||||||    
T  16155429 gaagaaagaaaa 16155418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 30238175 - 30238259
Alignment:
Q  17 aaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||||||||||  ||||||||||| ||| | ||||||||| ||||| ||| | ||||||||||||||||||||| ||||||||    
T  30238175 aaaccatccaaaaatacaagtttcacaggtttcaaaagttgttaataaacctatccaaaaaataaactagttaattt-ttcaaaag 30238259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 21718344 - 21718404
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaa 78  Q
    ||||||||||||| ||||||||||||||||| |||| ||||| |||||||||  |||||||    
T  21718344 aaccatccaaaaaggcaagtttcacaagttcttaaaattgttaataaaactatataaaaaa 21718404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 25050086 - 25050035
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta 69  Q
    ||||||||||||| |||||||||||||||||| |||| |||| |||||||||    
T  25050086 aaccatccaaaaatgcaagtttcacaagttcccaaaggtgttaataaaacta 25050035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 184 - 242
Target Start/End: Complemental strand, 7667236 - 7667178
Alignment:
Q  184 aaccctaattggtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaa 242  Q
    |||||||| |||||||||||| | ||||||| |||| |||||| |||||||||||||||    
T  7667236 aaccctaactggtatgtgctctcctgttcatggtttgagaactaagagaagaaagaaaa 7667178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 104
Target Start/End: Complemental strand, 53836420 - 53836336
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| ||||||||||||||  |||| |||   ||||||||| | |||||| ||||||| |||||||||| ||||||    
T  53836420 ccatcccaaaaaggaagtttcacaagtttataaacttgagaataaaactatccaaaaaacaaactaggtaatttcttcgaaaggt 53836336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 9031712 - 9031741
Alignment:
Q  73 aaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||||||||||||||||||||||||||    
T  9031712 aaaaaataaactagttaatttcttcaaaag 9031741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 9358 - 9133
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  |||||||||     
T  9358 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttaataaaactatctaaaaaataaactagttaatttcttcaaaaggacaacaaacact 9259  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattgg----tatgtgctcccatgtt 211  Q
    |||||   ||||||||||||  ||||||| | |||||| | ||| | |||||||||| ||  |||||||||||||| |||    ||||||||||| ||||    
T  9258 accacaacaaccctaaccggtgtcgcaataaacggcgttgaaatatgaatttccaccgtcgaaatcacaaccctaactggtatatatgtgctcccctgtt 9159  T
Q  212 catagtttcagaactcagagaagaaa 237  Q
    ||| |||| |||||||||||||||||    
T  9158 catggtttgagaactcagagaagaaa 9133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 89780 - 89540
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaa-ctacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacac 114  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |||||||||||||||||| |||||| ||    
T  89780 aaaaccatccaaaaaagaaagtttcacaagttcctaaagttgttaataaaaactatctaaaaaataaactatttaatttcttcaaaaggtcaacaaagac 89681  T
Q  115 caccaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcat 214  Q
    || ||| | ||||||||||||| ||| |||| ||  || || ||| | |||||||||| || ||||| ||||||||| || ||| |||| ||||||||||    
T  89680 catcactgcaaccctaaccggcgtcgtaatcgcctacggcgaaatatgaatttccaccgtcggaatcgcaaccctaactgttatatgcttccatgttcat 89581  T
Q  215 agtttcagaactcagagaagaaag-aaaacaaacgtttcat 254  Q
     |||| |||||||||||||||||| |||| |||||||||||    
T  89580 ggtttgagaactcagagaagaaagaaaaagaaacgtttcat 89540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 6e-49; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 242
Target Start/End: Complemental strand, 34218926 - 34218701
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||| |||||||||| | || ||| |||||||| | |||||||||||||||||| ||| |||||||| ||||||||||||||||| | | ||||||||||    
T  34218926 aaaatcatccaaaaatgtaacttttacaagttcttgaagttgttgataaaactatctagaaaataaattagttaatttcttcaaa-gatcaacaaacacc 34218828  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaattggtatgtgctcccatgttcata 215  Q
    ||||||| ||||||||| | | || ||||||||||||||| ||||| |||||||||| || ||||  ||||||||| || ||||||||||| | |||||     
T  34218827 accaccgcaaccctaactgacgtcacaatcaccggcgtcgaaatctgaatttccaccgtcggaattgcaaccctaactgatatgtgctcccctattcatg 34218728  T
Q  216 gtttcagaactcagagaagaaagaaaa 242  Q
    |||| ||||||||||||||| ||||||    
T  34218727 gtttgagaactcagagaagagagaaaa 34218701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 191
Target Start/End: Original strand, 29716506 - 29716681
Alignment:
Q  16 aaaaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggtaaacaaacacc 115  Q
    |||||||| |||||||||||||| ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||    
T  29716506 aaaaccattcaaaaaagcaagttacacaagttcctaaagtttttaataaaactatctaaaaaataaactagttaatttcttcaaaaggtcaacaagcacc 29716605  T
Q  116 accaccgaaaccctaaccggcatcgcaatcaccggcgtcggaatctaaatttccaccatcagaatcacaaccctaa 191  Q
    ||||||| ||||||||||| | ||| ||||| ||| |||| || || |||||||||| ||  |||| |||||||||    
T  29716606 accaccgtaaccctaaccgacgtcgtaatcatcggtgtcgaaaactgaatttccaccgtcgaaatcgcaaccctaa 29716681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 31913883 - 31913805
Alignment:
Q  17 aaaccatccaaaaaag-caagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttc 94  Q
    |||||||||||||||  |||||||||||||||  |||||||||| ||||| ||| | ||||||||||||||||||||||    
T  31913883 aaaccatccaaaaaacacaagtttcacaagtttttaaagttgttaataaacctatccaaaaaataaactagttaatttc 31913805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 36195987 - 36196069
Alignment:
Q  17 aaaccatccaaaaaa-gcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||||||||||||| ||||||||||||  |    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||    
T  36195987 aaaccatccaaaaaaagcaagtttcacatat----aaagttgttaataaaactatccaaaaaataaactagttaatttcttcaaaag 36196069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 5650412 - 5650496
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| ||||||||||||||||||||| ||||| |||   ||||||||| | |||||| ||| ||| |||||||||||||||||    
T  5650412 ccatcccaaaaagcaagtttcacaagtttctaaacttgagaataaaactatcaaaaaaacaaattaggtaatttcttcaaaaggt 5650496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 21490107 - 21490040
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaactacctaaaaaataaactag 86  Q
    ||||||||||||| ||||||||||||||||| |||||||||| |||||||||  ||||||| |||||||    
T  21490107 aaccatccaaaaaggcaagtttcacaagttcttaaagttgttaataaaacta-ttaaaaaaaaaactag 21490040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 43 - 102
Target Start/End: Original strand, 15286126 - 15286185
Alignment:
Q  43 aagttcctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||| ||||||||||| ||||||||| | ||||||||||| ||||||||||||||||||    
T  15286126 aagtttctaaagttgttaataaaactatccaaaaaataaacaagttaatttcttcaaaag 15286185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 16497519 - 16497566
Alignment:
Q  18 aaccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaa 65  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  16497519 aaccatccaaaaaagcaagtttcacaagttgctaaagttgttaataaa 16497566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 104
Target Start/End: Original strand, 37797757 - 37797842
Alignment:
Q  20 ccatccaaaaaagcaagtttcacaagttcctaaagttgttgataaaacta-cctaaaaaataaactagttaatttcttcaaaaggt 104  Q
    |||||| |||||| ||||||||||||||  |||| |||   ||||||||| || |||||| ||||||| |||||||||| ||||||    
T  37797757 ccatcccaaaaagaaagtttcacaagtttataaacttgagaataaaactatccaaaaaaacaaactaggtaatttcttcgaaaggt 37797842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 242
Target Start/End: Original strand, 36961 - 37014
Alignment:
Q  189 taattggtatgtgctcccatgttcatagtttcagaactcagagaagaaagaaaa 242  Q
    |||||||||||| ||||||||||||| |||| |||||| |||||||||||||||    
T  36961 taattggtatgtactcccatgttcatggtttgagaacttagagaagaaagaaaa 37014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 102
Target Start/End: Complemental strand, 38295 - 38242
Alignment:
Q  49 ctaaagttgttgataaaactacctaaaaaataaactagttaatttcttcaaaag 102  Q
    ||||| ||||| |||||||||   ||||||||||||||||||||||||||||||    
T  38295 ctaaaattgttaataaaactattcaaaaaataaactagttaatttcttcaaaag 38242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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