View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5019_low_12 (Length: 239)

Name: NF5019_low_12
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5019_low_12
NF5019_low_12
[»] chr2 (22 HSPs)
chr2 (19-225)||(39493425-39493631)
chr2 (19-225)||(39144586-39144792)
chr2 (24-218)||(39425524-39425718)
chr2 (24-225)||(39604306-39604507)
chr2 (19-225)||(39099577-39099783)
chr2 (19-218)||(2362676-2362875)
chr2 (19-225)||(39188740-39188946)
chr2 (30-216)||(39396649-39396835)
chr2 (30-207)||(39216665-39216842)
chr2 (78-219)||(39126482-39126623)
chr2 (36-173)||(39380497-39380634)
chr2 (65-218)||(39196542-39196695)
chr2 (129-219)||(39421279-39421369)
chr2 (126-219)||(39138642-39138735)
chr2 (44-219)||(39153055-39153230)
chr2 (126-217)||(39371115-39371206)
chr2 (42-185)||(44895116-44895259)
chr2 (65-218)||(39205774-39205927)
chr2 (126-218)||(44624779-44624871)
chr2 (63-173)||(39387524-39387634)
chr2 (128-165)||(39413124-39413161)
chr2 (62-98)||(31606536-31606572)
[»] chr3 (1 HSPs)
chr3 (54-219)||(51575981-51576146)
[»] chr4 (1 HSPs)
chr4 (19-98)||(33152229-33152308)
[»] chr7 (1 HSPs)
chr7 (126-219)||(19808899-19808992)
[»] chr5 (2 HSPs)
chr5 (126-207)||(33562297-33562378)
chr5 (124-216)||(17060645-17060737)


Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 39493425 - 39493631
Alignment:
Q  19 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgtt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493425 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgtt 39493524  T
Q  119 ttgacttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39493525 ttgacttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 39493624  T
Q  219 ataatgt 225  Q
    | |||||    
T  39493625 agaatgt 39493631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 39144792 - 39144586
Alignment:
Q  19 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgtt 118  Q
    |||| ||||||||||| ||||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||||| |||  ||||||||||||||||    
T  39144792 caaaaagctttaaaacatcatcttcattgaaagatggacccagcccataaattgacagaaggagtagaaaacctagaatcgccgctgaattttctgtgtt 39144693  T
Q  119 ttgacttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    ||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| | |||||||    
T  39144692 ttgacttatattggctttcaaatcaagtgctagcttcattgcttcttcttttacatgaggtttaatatctagtgagattttcctcagttccttgagcaga 39144593  T
Q  219 ataatgt 225  Q
    | |||||    
T  39144592 agaatgt 39144586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 24 - 218
Target Start/End: Original strand, 39425524 - 39425718
Alignment:
Q  24 agctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgac 123  Q
    ||||| ||||| || || || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| ||  ||||||||||  |||||||||    
T  39425524 agcttcaaaacttcttcttcgtcgaaagaaggaaccagtccataaattgacagaagaagtagaaaaccaagaacagccgctgaattttcattgttttgac 39425623  T
Q  124 ttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||| | |||||||    
T  39425624 ttatgttagctttcaaatcaagtgctaacttcattgcttcttcttttacatcaggtctaatatccggtgagattctcctaagttcattgagcaga 39425718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 39604507 - 39604306
Alignment:
Q  24 agctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgac 123  Q
    ||||||||||| ||||| ||||||||||| ||| ||| |||||||||||||| ||||||||||||||| ||||| || ||  ||||||| || |||| ||    
T  39604507 agctttaaaacttcatcttcatcgaaagaaggagccaatccataaattgacacaaggagtagaaaacccagaactgccaccaaattttcggtattttcac 39604408  T
Q  124 ttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaataat 223  Q
    ||||||||| ||||| || ||||||||||||||||||||||||| ||||| ||||| |||||| ||||  |||| || |||||| || |||||||| |||    
T  39604407 ttatgttagatttcaaattaagtgctagcttcattgcttcttctcttacacgaggtttaatatgtggtttgattctcatcagttgtttgagcagaagaat 39604308  T
Q  224 gt 225  Q
    ||    
T  39604307 gt 39604306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 39099783 - 39099577
Alignment:
Q  19 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgtt 118  Q
    |||| ||||||||||| ||||| ||||| ||||| ||| ||| |  ||||||||||||||||||||||||||| |||||||| || |||||||| ||  |    
T  39099783 caaaaagctttaaaacttcatcttcatcaaaagaaggagccaatttataaattgacagaaggagtagaaaaccaagaaccgccaccgaattttcagtagt 39099684  T
Q  119 ttgacttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    || ||||||   || |||||  | |||||| |||||||| ||||||||| |||||  |||| | |||| |||||||||| || |||||| ||||||||||    
T  39099683 ttcacttataaaagatttcaacttaagtgccagcttcatcgcttcttctcttacacaaggtttgatatgtggtgagattctcatcagttgttcgagcaga 39099584  T
Q  219 ataatgt 225  Q
    | |||||    
T  39099583 agaatgt 39099577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 2362875 - 2362676
Alignment:
Q  19 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgtt 118  Q
    |||| ||||||||||  ||||| ||||||||||| | ||||| ||||||||||||||||||||| | ||| || ||||| |  |||| |||||| || ||    
T  2362875 caaaaagctttaaaatttcatcttcatcgaaagaagaaaccaatccataaattgacagaaggagcaaaaaccccagaactggcactggattttcagtatt 2362776  T
Q  119 ttgacttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    ||  |  |||| ||||||||  | |||||||||||||||||||||||||   ||||||||| ||| || |||||||||| || |||||| ||||||||||    
T  2362775 ttcgccaatgtaagctttcagtttaagtgctagcttcattgcttcttctcgcacatgaggtttaacatgtggtgagattctcatcagttgttcgagcaga 2362676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 39188740 - 39188946
Alignment:
Q  19 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgtt 118  Q
    |||| ||||||||||| ||||| |||| |||||| |||||||  ||||||||||| ||||||||||||||||| |||||| | |  |||||| |  | ||    
T  39188740 caaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccattatt 39188839  T
Q  119 ttgacttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    ||   | ||||||||||| | |||||||||||| |||||||| || ||| ||||||||||| |||| || ||||||||| || ||||| ||  |||||||    
T  39188840 ttctttcatgttagcttttaaatcaagtgctagtttcattgcatcctctcttacatgaggtttaatgtcaggtgagattctcatcagtactatgagcaga 39188939  T
Q  219 ataatgt 225  Q
    | |||||    
T  39188940 agaatgt 39188946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 216
Target Start/End: Original strand, 39396649 - 39396835
Alignment:
Q  30 aaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgt 129  Q
    ||||| ||||| ||||||||||| | || || |||||||||||||| ||| |  | |||||| |||||||| |  |||||||| || ||||  || ||||    
T  39396649 aaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaattttcagtattttctctaatgt 39396748  T
Q  130 tagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagca 216  Q
     |||| ||| |||| |||||||||||| |||||||||| |||||  ||||||||||  |||||||||| || |||||||||| ||||    
T  39396749 aagctctcaaatcatgtgctagcttcagtgcttcttctcttacacaaggtctaatagttggtgagattctcatcagttcttctagca 39396835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 30 - 207
Target Start/End: Complemental strand, 39216842 - 39216665
Alignment:
Q  30 aaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgt 129  Q
    ||||| ||||| ||| | ||||| | ||||| |||||||||||||| ||| || |||||||| |||||| | |  |||||||  || |||| ||| ||||    
T  39216842 aaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaatttttagtattttcactcatgt 39216743  T
Q  130 tagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagtt 207  Q
    ||| ||||| ||||| ||||||||||| |||||||||| |||||  |||| ||||||  |||||||||||| ||||||    
T  39216742 tagatttcaaatcaaatgctagcttcaatgcttcttctcttacacaaggtttaatatgaggtgagattttcatcagtt 39216665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 78 - 219
Target Start/End: Complemental strand, 39126623 - 39126482
Alignment:
Q  78 aggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgag 177  Q
    |||||||||||||| |||| |||  ||||||||   || |||| ||||||||||| |||||  | ||| ||||||||||||||||||||| ||||| |||    
T  39126623 aggagtagaaaacccagaatcgccgctgaatttcaggttttttcacttatgttagatttcaatttaagagctagcttcattgcttcttctcttacacgag 39126524  T
Q  178 gtctaatatctggtgagattttcctcagttcttcgagcagaa 219  Q
    ||  ||||| | |||||||| || |||||| |||||||||||    
T  39126523 gttcaatatttagtgagattctcatcagttgttcgagcagaa 39126482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 36 - 173
Target Start/End: Original strand, 39380497 - 39380634
Alignment:
Q  36 tcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctt 135  Q
    ||||| ||||||||||| | || || |||||||||||||| ||| |||||||| || |||||||| || |||| ||| || || |  ||||||| |||||    
T  39380497 tcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagctt 39380596  T
Q  136 tcatatcaagtgctagcttcattgcttcttcttttaca 173  Q
    ||| ||||||||||||| ||| |||||||||| |||||    
T  39380597 tcaaatcaagtgctagcgtcagtgcttcttctcttaca 39380634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 218
Target Start/End: Original strand, 39196542 - 39196695
Alignment:
Q  65 ataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagcttcattgcttct 164  Q
    ||||||||||| ||| || ||||| || |||||||| |  |||||||| || || | | | ||||||||||||| ||||| ||||||||||| |||||||    
T  39196542 ataaattgacaaaagcagcagaaagccaagaaccgccaaagaattttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttct 39196641  T
Q  165 tcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    | | | |||  |||| ||||||||||||||||| || |||||| ||| ||||||    
T  39196642 tttctcacacaaggtttaatatctggtgagattctcatcagttgttccagcaga 39196695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 39421279 - 39421369
Alignment:
Q  129 ttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaa 219  Q
    |||||||||| |||||| || ||||||| ||||||||||||||||  || | |||||| ||||||||||||| |||||| ||| |||||||    
T  39421279 ttagctttcaaatcaagagcgagcttcaatgcttcttcttttacacaagttttaatatgtggtgagattttcatcagttgttctagcagaa 39421369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 39138735 - 39138642
Alignment:
Q  126 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaa 219  Q
    ||||||||||||| || |||||||||||||| |||||||||| |||||| |||| |||| |  ||||||||| || |||||| ||| |||||||    
T  39138735 atgttagctttcagattaagtgctagcttcaatgcttcttctcttacatcaggtttaatcttcggtgagattctcatcagttgttctagcagaa 39138642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 219
Target Start/End: Complemental strand, 39153230 - 39153055
Alignment:
Q  44 atcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatca 143  Q
    ||||||||| | ||||| ||||||||| |||| ||  ||||||||||| |||||| | |  |||||||| || ||||   |||| |||||||||| ||||    
T  39153230 atcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaattttcagtattttcttttattttagctttcaaatca 39153131  T
Q  144 agtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaa 219  Q
     |||| || |||| |||||||||| |||||  |||| |||| |  ||||||||| || |||||| ||| |||||||    
T  39153130 tgtgcgagtttcaatgcttcttctcttacacaaggtttaatcttcggtgagattctcatcagttgttctagcagaa 39153055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 39371206 - 39371115
Alignment:
Q  126 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcag 217  Q
    ||||| ||||||||||||||||||||||||| |||||| ||| |||||  |||   ||||| ||||||||||||| | |||| ||| |||||    
T  39371206 atgttggctttcatatcaagtgctagcttcaatgcttcatctcttacacaaggctcaatatttggtgagattttcataagttgttctagcag 39371115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 185
Target Start/End: Original strand, 44895116 - 44895259
Alignment:
Q  42 tcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatat 141  Q
    ||||||||||| | || || |||||||||||||| ||| ||||||||||| |||||| | |  |||||||| || |||    ||||||||||||| |  |    
T  44895116 tcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaatt 44895215  T
Q  142 caagtgctagcttcattgcttcttcttttacatgaggtctaata 185  Q
     | |||||||||||| ||||| |||| ||||| ||||| |||||    
T  44895216 tatgtgctagcttcaatgcttgttctcttacacgaggtttaata 44895259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 218
Target Start/End: Original strand, 39205774 - 39205927
Alignment:
Q  65 ataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagcttcattgcttct 164  Q
    |||||| |||| ||| ||||||||||| |||||||| |  |||||||| || ||||   | || ||||||||||  |||| ||||||||||| ||||| |    
T  39205774 ataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttagctttcaagtcaaatgctagcttcaatgctttt 39205873  T
Q  165 tcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    ||| | |||  ||||  |||| ||||||||||| || |||||| ||| ||||||    
T  39205874 tctctcacacaaggttcaataactggtgagattctcatcagttgttcaagcaga 39205927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 44624871 - 44624779
Alignment:
Q  126 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcaga 218  Q
    |||||||||||||  ||| | |||||||||| |||||| ||| |||||  |||| |||||| |||||||||| || |||||| ||| ||||||    
T  44624871 atgttagctttcaactcacgcgctagcttcaatgcttcatctcttacacaaggtttaatatttggtgagattgtcatcagtttttctagcaga 44624779  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 173
Target Start/End: Original strand, 39387524 - 39387634
Alignment:
Q  63 ccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagcttcattgctt 162  Q
    ||||||||||||| ||| || |||||||| ||||| || |  |||||||| || ||||   | ||||||||||| | |||| | |||||||||| |||||    
T  39387524 ccataaattgacaaaagcagcagaaaaccaagaacggccaaagaattttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgctt 39387623  T
Q  163 cttcttttaca 173  Q
    ||| |||||||    
T  39387624 ctttttttaca 39387634  T

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Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 39413124 - 39413161
Alignment:
Q  128 gttagctttcatatcaagtgctagcttcattgcttctt 165  Q
    ||||||||||| ||||||||||||||||| ||||||||    
T  39413124 gttagctttcaaatcaagtgctagcttcaatgcttctt 39413161  T

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Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Original strand, 31606536 - 31606572
Alignment:
Q  62 tccataaattgacagaaggagtagaaaacctagaacc 98  Q
    ||||||||||||| |||||||||||||||| ||||||    
T  31606536 tccataaattgacggaaggagtagaaaaccaagaacc 31606572  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 54 - 219
Target Start/End: Complemental strand, 51576146 - 51575981
Alignment:
Q  54 ggaaccagtccataaattgacagaaggagtagaaaacctagaaccgcaactgaattttctgtgttttgacttatgttagctttcatatcaagtgctagct 153  Q
    ||||||| ||||||||||||||||||||| ||| |||| |||||| | || |||||||| || |||| ||| ||||  ||||||| ||  ||  |||| |    
T  51576146 ggaaccaatccataaattgacagaaggagcagataaccaagaaccaccacggaattttcagtattttcactaatgtacgctttcaaattgaggactagtt 51576047  T
Q  154 tcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaa 219  Q
    ||| ||||||||||| |||||||||| | |||| |||||||||| || | |||| ||| |||||||    
T  51576046 tcaatgcttcttcttgtacatgaggtttgatatgtggtgagattctcattagttgttcaagcagaa 51575981  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 33152308 - 33152229
Alignment:
Q  19 caaatagctttaaaacctcatcctcatcgaaagatggaaccagtccataaattgacagaaggagtagaaaacctagaacc 98  Q
    |||| ||||||||||| ||||| ||||| ||||||| |||||  ||||||||||||||||| || |||||||| ||||||    
T  33152308 caaaaagctttaaaacttcatcttcatcaaaagatgaaaccaacccataaattgacagaagtagcagaaaacccagaacc 33152229  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 219
Target Start/End: Complemental strand, 19808992 - 19808899
Alignment:
Q  126 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagcagaa 219  Q
    ||||||||||||| ||||||||||||||||| || ||||||| |||||  |||| |||| |  ||||||||| || |||||| ||| |||||||    
T  19808992 atgttagctttcaaatcaagtgctagcttcaatgtttcttctcttacaccaggtttaatcttcggtgagattctcatcagttgttctagcagaa 19808899  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 126 - 207
Target Start/End: Complemental strand, 33562378 - 33562297
Alignment:
Q  126 atgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagtt 207  Q
    ||||||||||||| ||||| ||||||||||| |||||||| | | |||  ||||  |||||||||||||||| || ||||||    
T  33562378 atgttagctttcaaatcaaatgctagcttcaatgcttcttttctcacacaaggttcaatatctggtgagattctcatcagtt 33562297  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 17060737 - 17060645
Alignment:
Q  124 ttatgttagctttcatatcaagtgctagcttcattgcttcttcttttacatgaggtctaatatctggtgagattttcctcagttcttcgagca 216  Q
    |||||||||||||||  ||| ||||||||||||  ||||| |||||||||  || | |||||| |||||| ||| || |||||| ||| ||||    
T  17060737 ttatgttagctttcaactcatgtgctagcttcaaagcttcgtcttttacacaagatttaatatttggtgacattatcatcagttgttctagca 17060645  T

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