View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5019_low_5 (Length: 398)
Name: NF5019_low_5
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5019_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 37518042 - 37517675
Alignment:
| Q |
13 |
aatatcaaagaggaagaagcacttgaaagatacaaactgataactggaaatactgtattgttttctgaatttcaggtctacgattcaaaaccagaagaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37518042 |
aatatcaaagaggaagaagcacttgaaagatacaaactgataactgaaaatactgtattgttttctgaatttcaggtctacgattcaaaaccagaagaca |
37517943 |
T |
|
| Q |
113 |
gttggcttgctgcttcaccggatggcataattgacaggatggtatatgatttgccttctcgtggtgtactggaggttaagtgtccgtatttcgatggaga |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
37517942 |
gttggcttgctgcttcaccggatggtataattgacaggatggtatatgatttgccttctcgtggtgtactggaggttaagtgtccgtattttggtggaga |
37517843 |
T |
|
| Q |
213 |
catgagtaaagctttgccttggtatcgaattccagttcactatattcctcaagctcagggtttaatggagattctaggaagggactggatggatttttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37517842 |
catgagtaaagctttgccttggtatcgaattccagttcactatattcctcaagctcagggtttaatggagattctaggaagggactggatggatttttat |
37517743 |
T |
|
| Q |
313 |
gtttggactgttaatggtagtagtctattcaggatatatcgtgatccggagtattgggatgtaatgaa |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37517742 |
gtttggactgttaatggtagtagtctattcaggatatatcgtgatccagagtattgggatgtaatgaa |
37517675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 13 - 380
Target Start/End: Complemental strand, 14844199 - 14843832
Alignment:
| Q |
13 |
aatatcaaagaggaagaagcacttgaaagatacaaactgataactggaaatactgtattgttttctgaatttcaggtctacgattcaaaaccagaagaca |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
14844199 |
aatatcaaagaggaagaagcacttgaaagatacaaactgataactgtaaatactgtattgttttctgaatttcaggtctatgattcaaaaccagaagaca |
14844100 |
T |
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| Q |
113 |
gttggcttgctgcttcaccggatggcataattgacaggatggtatatgatttgccttctcgtggtgtactggaggttaagtgtccgtatttcgatggaga |
212 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
14844099 |
gttggcttgctgcttcaccggatggtataattgacaggatggtatatgatttgccttctcgtggtgtactggaggttaagtgtccgtattttgttggaga |
14844000 |
T |
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| Q |
213 |
catgagtaaagctttgccttggtatcgaattccagttcactatattcctcaagctcagggtttaatggagattctaggaagggactggatggatttttat |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14843999 |
catgagtaaagctttgccttggtatcgaattccagttcactatattcctcaagctcagggtttaatggagattctaggaagggactggatggatttttat |
14843900 |
T |
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| Q |
313 |
gtttggactgttaatggtagtagtctattcaggatatatcgtgatccggagtattgggatgtaatgaa |
380 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14843899 |
gtttggactgttaatggtagtagtctattcaggatatatcgtgatccagagtattgggatgtaatgaa |
14843832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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