View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5019_low_8 (Length: 340)

Name: NF5019_low_8
Description: NF5019
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5019_low_8
NF5019_low_8
[»] chr7 (3 HSPs)
chr7 (20-76)||(48574074-48574130)
chr7 (281-324)||(1461556-1461599)
chr7 (254-323)||(39678388-39678457)
[»] chr1 (1 HSPs)
chr1 (265-323)||(14495843-14495901)
[»] chr8 (2 HSPs)
chr8 (274-323)||(9188388-9188437)
chr8 (255-323)||(26530084-26530152)
[»] chr4 (3 HSPs)
chr4 (262-323)||(33731142-33731203)
chr4 (279-323)||(24638588-24638632)
chr4 (255-323)||(44815630-44815698)
[»] scaffold0086 (1 HSPs)
scaffold0086 (267-323)||(49652-49708)


Alignment Details
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 48574074 - 48574130
Alignment:
Q  20 aaaaacaattaaaataaaaactaacccaagattaaccttccaaaacaaactcgtaca 76  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||    
T  48574074 aaaagcaattaaaataaaaactaacccaagatttaccttccaaaacaaactcataca 48574130  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 1461556 - 1461599
Alignment:
Q  281 tattatgttgttgtttgtttgtaaatatgttggatgtggaaatt 324  Q
    ||||||||||| |||||||| ||||||||||||||||| |||||    
T  1461556 tattatgttgtggtttgtttctaaatatgttggatgtgaaaatt 1461599  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 323
Target Start/End: Original strand, 39678388 - 39678457
Alignment:
Q  254 tatatgatctctgtattgggacacgattattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    |||||| ||| |||| |||||||||||| |||||| || |||| |||   ||||||||||||||||||||    
T  39678388 tatatggtctgtgtaatgggacacgattgttatgtcgtggtttatttaagaatatgttggatgtggaaat 39678457  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 323
Target Start/End: Original strand, 14495843 - 14495901
Alignment:
Q  265 tgtattgggacacgattattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    |||| ||||||||||||||||||| || |||| ||||  ||||||||||||||||||||    
T  14495843 tgtaatgggacacgattattatgtcgtggtttttttgagaatatgttggatgtggaaat 14495901  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 9188388 - 9188437
Alignment:
Q  274 acacgattattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    |||||||||||||||||| | |||||| | ||||||||||||||||||||    
T  9188388 acacgattattatgttgtggattgtttatgaatatgttggatgtggaaat 9188437  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 26530084 - 26530152
Alignment:
Q  255 atatgatctctgtattgggacacgattattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    ||||| ||| |||| |||||||||||| |||||| || |||| |||   ||||||||||||||||||||    
T  26530084 atatggtctgtgtaatgggacacgattgttatgtcgtggtttctttaagaatatgttggatgtggaaat 26530152  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 323
Target Start/End: Original strand, 33731142 - 33731203
Alignment:
Q  262 ctctgtattgggacacgattattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    ||||||| ||||||||||||||||||| || |||| |||   ||||||||||||||| ||||    
T  33731142 ctctgtaatgggacacgattattatgtcgtggtttatttaagaatatgttggatgtgaaaat 33731203  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 323
Target Start/End: Original strand, 24638588 - 24638632
Alignment:
Q  279 attattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    ||||||||||||| |||||||| | ||||||||||||||| ||||    
T  24638588 attattatgttgtggtttgtttatgaatatgttggatgtgaaaat 24638632  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 44815630 - 44815698
Alignment:
Q  255 atatgatctctgtattgggacacgattattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    |||||| || |||| |||||||||||| |||||| ||||||| |||   |||||||| |||||||||||    
T  44815630 atatgacctgtgtaatgggacacgattgttatgtcgttgtttatttaagaatatgttagatgtggaaat 44815698  T

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Target: scaffold0086 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 323
Target Start/End: Original strand, 49652 - 49708
Alignment:
Q  267 tattgggacacgattattatgttgttgtttgtttgtaaatatgttggatgtggaaat 323  Q
    ||||||||||||||| |||||| || |||| |||   ||||||||||||||||||||    
T  49652 tattgggacacgattgttatgtcgtggtttatttaagaatatgttggatgtggaaat 49708  T

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