View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-1 (Length: 1220)
Name: NF5020-Insertion-1
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 511 - 1041
Target Start/End: Complemental strand, 8407681 - 8407144
Alignment:
| Q |
511 |
gttgtctcaaatcaaacctgttcttaatttctaaaactgccggagactgaacttatagcatccattagctgctttatttcagattcactaagcttggatc |
610 |
Q |
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| T |
8407681 |
gttgtctcaaatcaaacttgttcttaatttctaaaactgccggagactgaacttacagcatccattagctgctttatttcagattcactaagcttggatc |
8407582 |
T |
|
| Q |
611 |
ccaatttggacagtccagattttagttcttcatatgtgattgtgccacttcgatcagtatctatattgttgaacatttgtttcaagcccttgatttcctc |
710 |
Q |
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| T |
8407581 |
ccaatttggacagtccagattttagttcttcatatgtgattgtgccacttcgatcggtatctatattgttgaacatttgtttcaagcccttgatttcctc |
8407482 |
T |
|
| Q |
711 |
atctgaaaggttttctgctattaccttccatatnnnnnnnnnnnnnnnnnnnntatttattagcgagcaagtataactatctaagtggttttgattatac |
810 |
Q |
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| T |
8407481 |
atctgaaaggttttctgctattaccttccatataaaaaataagaaaaaataaata-ttattagcaagcaagtataactatctaagtggttttgattatac |
8407383 |
T |
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| Q |
811 |
gatgttaatctaaatttaagatacctttaaagcaagtttcttcatcttgttcattgctctgaattgtttcatcctaattaaaacagcattgtctaaaggc |
910 |
Q |
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| T |
8407382 |
gatgttaatctaaatttaagacacctttaaagcaagtttcttcatcttgttcattgctctgaattgtttcatcctaattaaaacagcattatctaaaggc |
8407283 |
T |
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| Q |
911 |
ttgtctgatgcctcaccacctt-cttcatccatggatgttctgtttcaactt-ataatgtgagtctt-gaccttatcgatgataaaa--ttgtcaaaaca |
1005 |
Q |
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| T |
8407282 |
ttgtctgatgcctcaccaccttccttcatccatggatgttctgtttcaacttaataatgtgagtcttggaccttatcgatgataaaaattggtcaaaaca |
8407183 |
T |
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| Q |
1006 |
--tata-ataaaatacagctgatcatgctaggcatcaac |
1041 |
Q |
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| T |
8407182 |
ataatacataaaatacagctgatcatgctaggcatcaac |
8407144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 6 - 381
Target Start/End: Complemental strand, 8408197 - 8407822
Alignment:
| Q |
6 |
caagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgtcttgattttatcatctgaattacttgttaatcaagcaat |
105 |
Q |
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| T |
8408197 |
caagaatctgagaaatagacgaaaaatctgataatactgaatttttatggaccaaatctgtcttgattttatcatctgaattacttgttaatcaagcaat |
8408098 |
T |
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| Q |
106 |
gtgtgtcatagttaaggataaagcaaaggaaccaaatactgacccgctgttatccttgtcaaagtattgaaaagccttgaacaaattctcttccctctca |
205 |
Q |
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| T |
8408097 |
gtgtgtcatagttaaggataaagcaaaggaaccaaatactgacccgctgttatccttgtcaaagtattgaaaagccttgaacaaattctcttccctctca |
8407998 |
T |
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| Q |
206 |
agtttatgccggtttattgtggcagtaatgaattcatgatagtcaatagttccattcttgtcaacatcagcctgaccaaacatgtgaattaggaaagcta |
305 |
Q |
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| T |
8407997 |
agtttatgccggtttattgtggcagtaatgaattcatgatagtcaatagttccattcttgtcaacatcagcctgaccaaacatgtgaattaggaaaacta |
8407898 |
T |
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| Q |
306 |
tgtaagttcttattttatactttcttcatgaagaaaaaagaccagaaacactagtgtctgtttgatgtgagaaaat |
381 |
Q |
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| T |
8407897 |
tgtaagttcttattttatactttcttcatgaagaaaaaagatcagaaacactagtgtctgtttgatgtgagaaaat |
8407822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 832 - 921
Target Start/End: Original strand, 41620708 - 41620797
Alignment:
| Q |
832 |
tacctttaaagcaagtttcttcatcttgttcattgctctgaattgtttcatcctaattaaaacagcattgtctaaaggcttgtctgatgc |
921 |
Q |
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|||||||||||| | |||||| | |||||||||||||| ||| |||||||| || | ||||||||| | || | ||||||||| ||||| |
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| T |
41620708 |
tacctttaaagctactttctttagcttgttcattgctcggaactgtttcattctgctcaaaacagcaatatcaagaggcttgtcagatgc |
41620797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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