View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5020-Insertion-10 (Length: 622)

Name: NF5020-Insertion-10
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5020-Insertion-10
NF5020-Insertion-10
[»] chr2 (25 HSPs)
chr2 (8-622)||(13592489-13593099)
chr2 (8-257)||(21834393-21834645)
chr2 (49-234)||(17581331-17581517)
chr2 (448-578)||(17581047-17581176)
chr2 (22-176)||(9647814-9647965)
chr2 (9-179)||(9556561-9556731)
chr2 (481-573)||(37281687-37281781)
chr2 (481-612)||(45368233-45368366)
chr2 (453-573)||(2610108-2610231)
chr2 (453-573)||(4807172-4807295)
chr2 (480-573)||(12475030-12475123)
chr2 (453-572)||(11992685-11992807)
chr2 (481-572)||(41763659-41763750)
chr2 (273-347)||(17581218-17581292)
chr2 (303-360)||(6238241-6238298)
chr2 (40-179)||(12734620-12734758)
chr2 (481-573)||(8180360-8180452)
chr2 (483-598)||(24584218-24584333)
chr2 (481-543)||(13148923-13148985)
chr2 (481-551)||(23866257-23866327)
chr2 (481-569)||(30743207-30743295)
chr2 (119-209)||(16097293-16097384)
chr2 (87-177)||(38434872-38434962)
chr2 (481-570)||(38453230-38453318)
chr2 (483-511)||(28317388-28317416)
[»] chr6 (18 HSPs)
chr6 (12-339)||(25494045-25494371)
chr6 (453-612)||(5258729-5258891)
chr6 (481-572)||(33495788-33495879)
chr6 (453-572)||(10100436-10100558)
chr6 (481-572)||(5631398-5631489)
chr6 (486-599)||(26291336-26291451)
chr6 (481-572)||(20428246-20428337)
chr6 (22-209)||(608047-608234)
chr6 (481-531)||(3632638-3632688)
chr6 (8-177)||(9593897-9594073)
chr6 (453-572)||(9706357-9706479)
chr6 (486-569)||(27790740-27790823)
chr6 (87-169)||(33083987-33084069)
chr6 (88-205)||(33496076-33496194)
chr6 (300-353)||(5258635-5258688)
chr6 (119-168)||(7513286-7513335)
chr6 (22-79)||(24665830-24665887)
chr6 (119-168)||(33998307-33998356)
[»] chr5 (28 HSPs)
chr5 (459-622)||(23979760-23979926)
chr5 (41-167)||(20077042-20077168)
chr5 (40-209)||(32759465-32759633)
chr5 (453-612)||(20318532-20318694)
chr5 (481-573)||(28977467-28977559)
chr5 (481-594)||(27489-27602)
chr5 (453-612)||(1274806-1274968)
chr5 (453-572)||(3301430-3301552)
chr5 (481-612)||(1288199-1288330)
chr5 (8-83)||(23979962-23980037)
chr5 (453-573)||(2076053-2076176)
chr5 (453-572)||(3394292-3394413)
chr5 (481-553)||(16348012-16348084)
chr5 (272-363)||(1288046-1288137)
chr5 (481-619)||(37124103-37124242)
chr5 (453-573)||(12492966-12493089)
chr5 (481-573)||(24178104-24178196)
chr5 (111-208)||(7678369-7678467)
chr5 (481-571)||(27302557-27302647)
chr5 (8-82)||(33158022-33158096)
chr5 (303-363)||(3394444-3394504)
chr5 (147-209)||(21093664-21093727)
chr5 (87-176)||(11002694-11002781)
chr5 (22-79)||(7359465-7359521)
chr5 (453-573)||(10638877-10639000)
chr5 (519-576)||(35685428-35685485)
chr5 (303-363)||(2075962-2076022)
chr5 (119-175)||(21952274-21952330)
[»] chr1 (33 HSPs)
chr1 (8-353)||(16273012-16273353)
chr1 (13-215)||(52633369-52633571)
chr1 (440-606)||(52641020-52641186)
chr1 (449-600)||(32066846-32066997)
chr1 (448-561)||(16273406-16273519)
chr1 (8-113)||(9002338-9002443)
chr1 (453-573)||(1210325-1210448)
chr1 (453-573)||(8671500-8671623)
chr1 (481-572)||(32083355-32083446)
chr1 (481-612)||(49348004-49348135)
chr1 (453-573)||(51441343-51441466)
chr1 (459-622)||(40419212-40419378)
chr1 (481-573)||(43240991-43241083)
chr1 (453-612)||(51601599-51601761)
chr1 (273-348)||(52640883-52640958)
chr1 (453-622)||(28528112-28528284)
chr1 (303-360)||(34827590-34827647)
chr1 (481-573)||(35829003-35829095)
chr1 (40-209)||(15085822-15085993)
chr1 (481-569)||(37463475-37463560)
chr1 (40-72)||(8796236-8796268)
chr1 (482-566)||(52421017-52421101)
chr1 (40-209)||(696157-696328)
chr1 (22-202)||(32231159-32231341)
chr1 (40-176)||(1210667-1210804)
chr1 (11-72)||(32404720-32404781)
chr1 (145-205)||(46226611-46226672)
chr1 (92-169)||(52442780-52442857)
chr1 (119-179)||(16822322-16822382)
chr1 (385-429)||(27445596-27445640)
chr1 (119-167)||(29578234-29578282)
chr1 (303-351)||(46226770-46226818)
chr1 (12-72)||(48431601-48431661)
[»] chr4 (37 HSPs)
chr4 (8-360)||(17666234-17666583)
chr4 (449-622)||(17667904-17668074)
chr4 (43-345)||(8917555-8917857)
chr4 (450-600)||(17666614-17666762)
chr4 (481-572)||(41427420-41427511)
chr4 (453-612)||(23906880-23907042)
chr4 (453-612)||(48174672-48174834)
chr4 (481-612)||(31960424-31960555)
chr4 (87-167)||(17668382-17668462)
chr4 (453-573)||(27450752-27450875)
chr4 (453-612)||(435770-435932)
chr4 (25-176)||(54470129-54470281)
chr4 (87-238)||(17667123-17667269)
chr4 (453-573)||(56374870-56374993)
chr4 (50-168)||(31403250-31403372)
chr4 (481-553)||(47265814-47265886)
chr4 (481-573)||(48623137-48623229)
chr4 (111-174)||(2588905-2588968)
chr4 (448-566)||(8917906-8918025)
chr4 (119-169)||(17900409-17900459)
chr4 (111-169)||(44860783-44860841)
chr4 (49-168)||(33709849-33709974)
chr4 (481-573)||(1777625-1777717)
chr4 (294-346)||(3273173-3273225)
chr4 (485-572)||(39708038-39708125)
chr4 (481-612)||(53707335-53707466)
chr4 (147-208)||(49739125-49739187)
chr4 (8-69)||(7092411-7092472)
chr4 (22-102)||(28497486-28497566)
chr4 (40-176)||(31960037-31960174)
chr4 (87-176)||(33191119-33191208)
chr4 (453-553)||(33226809-33226912)
chr4 (119-215)||(45205151-45205248)
chr4 (481-509)||(30807242-30807270)
chr4 (111-167)||(43070059-43070115)
chr4 (31-71)||(55768715-55768755)
chr4 (31-71)||(55832971-55833011)
[»] chr7 (30 HSPs)
chr7 (31-360)||(23087318-23087647)
chr7 (481-612)||(33350416-33350547)
chr7 (41-209)||(47848562-47848732)
chr7 (453-572)||(32630188-32630310)
chr7 (481-612)||(31004765-31004896)
chr7 (481-612)||(36651535-36651666)
chr7 (481-612)||(37616457-37616588)
chr7 (111-176)||(30200254-30200319)
chr7 (453-573)||(46356430-46356553)
chr7 (481-573)||(39906989-39907081)
chr7 (515-622)||(33572563-33572670)
chr7 (87-169)||(48736170-48736252)
chr7 (481-573)||(36869899-36869991)
chr7 (453-612)||(49028808-49028970)
chr7 (132-209)||(25579387-25579465)
chr7 (40-176)||(43491230-43491367)
chr7 (481-553)||(24177805-24177877)
chr7 (303-363)||(33072688-33072748)
chr7 (471-622)||(23087715-23087866)
chr7 (87-208)||(36514478-36514598)
chr7 (87-169)||(39811886-39811968)
chr7 (119-176)||(1740719-1740776)
chr7 (87-176)||(11593882-11593971)
chr7 (40-176)||(31005145-31005282)
chr7 (11-72)||(38135406-38135467)
chr7 (303-363)||(31004957-31005017)
chr7 (40-202)||(34869315-34869479)
chr7 (111-167)||(36102060-36102116)
chr7 (303-363)||(37616650-37616710)
chr7 (303-363)||(46356339-46356399)
[»] chr8 (32 HSPs)
chr8 (449-619)||(28300683-28300852)
chr8 (8-238)||(28300304-28300533)
chr8 (460-622)||(33830819-33830981)
chr8 (449-582)||(38667130-38667264)
chr8 (98-209)||(38667443-38667554)
chr8 (453-612)||(36565820-36565982)
chr8 (481-573)||(36544732-36544824)
chr8 (481-572)||(41444914-41445005)
chr8 (453-573)||(12492421-12492544)
chr8 (481-573)||(18849725-18849817)
chr8 (119-175)||(29520583-29520639)
chr8 (111-238)||(30783335-30783463)
chr8 (48-175)||(33827988-33828116)
chr8 (481-572)||(15215880-15215971)
chr8 (111-169)||(16252864-16252922)
chr8 (182-235)||(33828518-33828572)
chr8 (449-572)||(4033069-4033195)
chr8 (40-103)||(41444549-41444613)
chr8 (303-363)||(42854492-42854552)
chr8 (525-572)||(13984211-13984258)
chr8 (87-166)||(32043522-32043601)
chr8 (47-176)||(13171879-13172009)
chr8 (111-169)||(36069572-36069630)
chr8 (22-72)||(41971983-41972033)
chr8 (40-128)||(9695601-9695690)
chr8 (87-164)||(44681310-44681387)
chr8 (481-509)||(3285133-3285161)
chr8 (385-429)||(4033034-4033078)
chr8 (12-68)||(9905076-9905132)
chr8 (22-176)||(36395154-36395310)
chr8 (303-363)||(36544886-36544946)
chr8 (40-96)||(38668047-38668103)
[»] chr3 (24 HSPs)
chr3 (465-582)||(43111610-43111727)
chr3 (453-612)||(52138369-52138531)
chr3 (449-570)||(48221367-48221491)
chr3 (453-570)||(25190962-25191082)
chr3 (481-570)||(19736749-19736838)
chr3 (481-570)||(19757651-19757740)
chr3 (453-612)||(51448288-51448450)
chr3 (481-568)||(29817090-29817177)
chr3 (40-209)||(26490205-26490374)
chr3 (453-612)||(47542290-47542452)
chr3 (154-348)||(43111395-43111586)
chr3 (481-553)||(38849694-38849766)
chr3 (22-155)||(39600886-39601020)
chr3 (40-176)||(42510237-42510371)
chr3 (493-570)||(19757567-19757644)
chr3 (40-166)||(36820184-36820309)
chr3 (453-572)||(9258464-9258582)
chr3 (481-511)||(1470707-1470737)
chr3 (119-208)||(29919193-29919283)
chr3 (119-208)||(29968346-29968436)
chr3 (273-353)||(27917316-27917396)
chr3 (459-506)||(30724385-30724435)
chr3 (303-363)||(38849828-38849888)
chr3 (8-72)||(45289282-45289346)
[»] scaffold0018 (2 HSPs)
scaffold0018 (481-573)||(31048-31140)
scaffold0018 (40-169)||(31397-31527)
[»] scaffold0113 (1 HSPs)
scaffold0113 (481-545)||(12208-12272)
[»] scaffold0220 (1 HSPs)
scaffold0220 (515-568)||(24865-24918)
[»] scaffold0171 (1 HSPs)
scaffold0171 (453-533)||(5812-5895)
[»] scaffold0003 (1 HSPs)
scaffold0003 (111-164)||(347255-347308)


Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 8 - 622
Target Start/End: Original strand, 13592489 - 13593099
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccc 107  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||    
T  13592489 cttcttactataatatctacatgttttctctatacatgtccaaaccacctaaac-tattttccacaatatttatactataggtgctaccccaactatccc 13592587  T
Q  108 tacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttct 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  13592588 tacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacacaacatccccatctccacacacttactttattctcttgttggttct 13592687  T
Q  208 tagctgccaatactttgttccataaaacatctttgtactggcaactgtctggtannnnnnnncatttcaacttaaacggtacgtttgtataacaaaaaac 307  Q
    || | ||||||||||||||||||||||||||||||||| ||||| |||||||||        ||||| ||||||||||||||||||||||||||||||||    
T  13592688 taaccgccaatactttgttccataaaacatctttgtaccggcaattgtctggta--ttttttcatttaaacttaaacggtacgtttgtataacaaaaaac 13592785  T
Q  308 acatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctgannnnnnnnnnnnnnaaggaattacatctgattttatttctcca 407  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||              |||||||||||||||||||||||||||||    
T  13592786 acatgaggctcttctacatttcaacaatccaacttgaatacaatgcattacatctga-ttttttttttttgaaggaattacatctgattttatttctcca 13592884  T
Q  408 ttattttgtactatgaacccaannnnnnnnnngttgaaagaatgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctc 507  Q
    ||||||||||||||||||||||          |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13592885 ttattttgtactatgaacccaagtatttttttgttgaatgaatgaacccaagatatctaaactgtgtaacttctatgatatgatcttcaactttcacctc 13592984  T
Q  508 taagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccag 607  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13592985 taagtttgaactacttcgtcttttgttgaagttacattacacataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccag 13593084  T
Q  608 gtctcctacatccca 622  Q
    |||||||||||||||    
T  13593085 gtctcctacatccca 13593099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 8 - 257
Target Start/End: Complemental strand, 21834645 - 21834393
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctatttt-ccacaatattt-atacaaaaggtgctaccccaactatc 105  Q
    |||||||||| |  ||||||||||||| | | ||||||||| |||||||||||||| |||| ||||||||||| |||| | |||||||||| ||||||||    
T  21834645 cttcttactacataatctacatgttttttatttacatgtcctaaccacctaaacctttttttccacaatatttcatactataggtgctacctcaactatc 21834546  T
Q  106 cctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggtt 205  Q
      ||||||||||  ||||||||||||||| |||||| | | |||||||||||||| |||||||   ||||| ||| ||||||||||||||| ||||||||    
T  21834545 tttacaatgttgtaatttctaatcttatctcatctagtcttaccacacatccaactcaacatctttatctcaacacacttactttattctcgtgttggtt 21834446  T
Q  206 cttagctgc-caatactttgttccataaaacatctttgtactggcaactgtct 257  Q
     ||| | || ||||||| |||||||||||||||| |||  ||| |||||||||    
T  21834445 attaacagctcaatactatgttccataaaacatcgttggtctgacaactgtct 21834393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 49 - 234
Target Start/End: Complemental strand, 17581517 - 17581331
Alignment:
Q  49 aaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcac 148  Q
    |||||||| |||||| ||||||||||| ||||||| | ||||||||||  ||||||| ||||||||||| ||||| ||||||||||  ||||| | | ||    
T  17581517 aaaccaccaaaacctcttttccacaatgtttatactataggtgctaccttaactatctctacaatgttgtcatttttaatcttatcatatctagtcttac 17581418  T
Q  149 cacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttctt-agctgccaatactttgttccataaaa 234  Q
    ||||||||||||  ||||||||||||  | || |||||||||||| || ||||||||||| | || |||||||||||| ||||||||    
T  17581417 cacacatccaacaaaacatccccatcctcgcacacttactttattttcgtgttggttcttaacctcccaatactttgtcccataaaa 17581331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 448 - 578
Target Start/End: Complemental strand, 17581176 - 17581047
Alignment:
Q  448 aatgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattac 547  Q
    |||||||||| || || ||||||||||||||| |||||||||||||| ||||||||| |||||| | |||||||||||  ||||  ||||  ||||||||    
T  17581176 aatgaacccaaga-atttaaactgtgtaacttgtatgatatgatctctaactttcacttctaaggtcgaactacttcgcattttactgaaactacattac 17581078  T
Q  548 atataccatgtcttgcttctactcaaacaaa 578  Q
    |||||| ||| ||||||||||||||||||||    
T  17581077 atatactatggcttgcttctactcaaacaaa 17581047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 9647814 - 9647965
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttccacaat-atttatacaaaaggtgctaccccaactatccctacaatgttgcca 120  Q
    ||||||| || |||||| ||||||||||||||||||||| ||| ||||||| || |||| ||| | |||| || ||||||||    ||| ||||||| ||    
T  9647814 atctacaggtcttctttttacatgtccaaaccacctaaagctagtttccaccatcatttctactataggtactgccccaact----ctataatgttgaca 9647909  T
Q  121 tttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    |||||||||||||| |||||| | | ||||||||||||||||||||||| ||||||    
T  9647910 tttctaatcttatcacatctagtcttaccacacatccaacgcaacatcctcatctc 9647965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 179
Target Start/End: Original strand, 9556561 - 9556731
Alignment:
Q  9 ttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccct 108  Q
    ||||||||| |  |||||| ||| |||| | |||||| | ||||||||||| |||||||||||| || ||| ||| | | ||| |||||||||| || ||    
T  9556561 ttcttactacagaatctacttgtcttctctctacatgcctaaaccacctaagcctattttccaccatttttctactataagtgttaccccaactttctct 9556660  T
Q  109 acaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac 179  Q
      ||||||| ||||||||||| |||||| |||||| | |||||||||||||| |||||||| || ||||||    
T  9556661 ctaatgttgtcatttctaatcatatcccgtctaatcttaccacacatccaacacaacatcctcaactccac 9556731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 573
Target Start/End: Complemental strand, 37281781 - 37281687
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagt--tacattacatataccatgtcttgcttctactcaa 573  Q
    ||||| |||||||| |||||||||||| ||| | ||||||||| |||||||||||||||  |||||| |||||||  ||||||||||||||||||    
T  37281781 tatgacatgatctcaaactttcacctccaaggtagaactactttgtcttttgttgaagtactacatttcatatactttgtcttgcttctactcaa 37281687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 481 - 612
Target Start/End: Original strand, 45368233 - 45368366
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactac--ttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaa 578  Q
    ||||||||||||||||||||||||||| ||| | || | ||  |||  ||||||||||||||||||| ||||||||  ||||||||||||||||  | ||    
T  45368233 tatgatatgatctccaactttcacctccaaggtagacccacacttctccttttgttgaagttacattccatataccccgtcttgcttctactcaggcgaa 45368332  T
Q  579 agtcttacggttctaagacttgactccaggtctc 612  Q
    |  | |||| ||||||| |||| |||||||||||    
T  45368333 aaccatacgcttctaaggcttgcctccaggtctc 45368366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 2610231 - 2610108
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  ||| || |||||||||||| |||    
T  2610231 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttctgctgaagttacatttcat 2610132  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  2610131 atactccgtcttgcttctactcaa 2610108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 4807295 - 4807172
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| |||||||||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||    |||||||||||| |||    
T  4807295 acccaagatatttaaactgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccactgaagttacattccat 4807196  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  4807195 atactccgtcttgcttctactcaa 4807172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 480 - 573
Target Start/End: Original strand, 12475030 - 12475123
Alignment:
Q  480 ctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    |||||||||||||||||||||||||||||||| | || |||||||  |||  | |||||||||||| |||||||   ||||||||| |||||||    
T  12475030 ctatgatatgatctccaactttcacctctaaggtagacctacttctccttccgctgaagttacattccatatactccgtcttgcttatactcaa 12475123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 572
Target Start/End: Original strand, 11992685 - 11992807
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||||||| | || | |||||   ||||  |||||||||||| |||    
T  11992685 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctctaaggtagacccacttctctttttactgaagttacattccat 11992784  T
Q  550 ataccatgtcttgcttctactca 572  Q
    ||||   ||||||||||||||||    
T  11992785 atacttcgtcttgcttctactca 11992807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 572
Target Start/End: Original strand, 41763659 - 41763750
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    |||||||| |||||||||||||||||| ||| | || | |||||  |||||| |||||||||||| |||||||   ||||||||||||||||    
T  41763659 tatgatataatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccatatactccgtcttgcttctactca 41763750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 273 - 347
Target Start/End: Complemental strand, 17581292 - 17581218
Alignment:
Q  273 ttcaacttaaacggtacgtttgtataacaaaaaacacatgaggctcatctacatttcaacaatccaacttgaata 347  Q
    |||||||||||||||| |||||||| ||| ||||||| |||| ||| ||| ||||| ||| ||||||||||||||    
T  17581292 ttcaacttaaacggtaagtttgtatcacataaaacacctgagactcttctccatttgaaccatccaacttgaata 17581218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 6238241 - 6238298
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacat 360  Q
    |||||||||||||||| ||| ||||||||| ||||||||||||||| |||| ||||||    
T  6238241 aaaacacatgaggctcttctccatttcaaccatccaacttgaatacgatgatttacat 6238298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 40 - 179
Target Start/End: Complemental strand, 12734758 - 12734620
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    ||||||||||||||| |||| ||||||||| || ||| ||| ||| | |||||||||||| ||| || |||  ||| || ||||||||||| |||||| |    
T  12734758 tacatgtccaaaccatctaagcctattttctaccaatttttctactataggtgctacccccactctctcta--atggtgtcatttctaatcctatcccgt 12734661  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctccac 179  Q
    ||| | | ||||| |||||| | |||||||| |||||||||    
T  12734660 ctagtcttaccactcatccagcacaacatcctcatctccac 12734620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 573
Target Start/End: Complemental strand, 8180452 - 8180360
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||    |||| ||||||| |||||||  ||||||||||||||||||    
T  8180452 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccactgaaattacattccatatactctgtcttgcttctactcaa 8180360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 483 - 598
Target Start/End: Original strand, 24584218 - 24584333
Alignment:
Q  483 tgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaagtc 582  Q
    ||||||||||||||||||||||||| ||| | ||  || |||  |||||| |||||||||||| |||||||   |||||| |||||||||| |  || ||    
T  24584218 tgatatgatctccaactttcacctccaaggtagacataattctccttttgctgaagttacattccatatactccgtcttgtttctactcaagcggaaatc 24584317  T
Q  583 ttacggttctaagact 598  Q
     |||| ||||||||||    
T  24584318 atacgcttctaagact 24584333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 543
Target Start/End: Complemental strand, 13148985 - 13148923
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttaca 543  Q
    ||||||||||||||||||||||||||| ||| || ||||| |||  |||||| ||||||||||    
T  13148985 tatgatatgatctccaactttcacctccaaggttaaactatttctccttttgctgaagttaca 13148923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 551
Target Start/End: Complemental strand, 23866327 - 23866257
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatat 551  Q
    |||||||||||||| ||||||||| |||||||| ||||||||| | |||||||| || |||  ||||||||    
T  23866327 tatgatatgatctctaactttcacatctaagttagaactactttgccttttgttaaaattaatttacatat 23866257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 569
Target Start/End: Complemental strand, 30743295 - 30743207
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctac 569  Q
    |||| |||||||||||||||||||||| ||| | || | | |||  |||||| |||||||||||| |||||||  |||||| |||||||    
T  30743295 tatggtatgatctccaactttcacctccaaggtagaccaatttctccttttgctgaagttacattccatatactctgtctttcttctac 30743207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 16097293 - 16097384
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctta 209  Q
    ||||||||||| ||||||||||| | | ||||| ||||||  ||||||||| ||||||| | | |||||||| |||||| |||||| |||||    
T  16097293 catttctaatcatatcccatctagtcttaccactcatccagtgcaacatcctcatctccgctacacttacttgattctcatgttggctctta 16097384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 177
Target Start/End: Complemental strand, 38434962 - 38434872
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctcc 177  Q
    |||||||||||||| | || ||  ||||||| ||||||||||||| || | |||| | | ||||| ||||||| ||||||||| |||||||    
T  38434962 aggtgctaccccaattctctctctaatgttgtcatttctaatcttctctcgtctagttttaccacgcatccaatgcaacatcctcatctcc 38434872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 481 - 570
Target Start/End: Original strand, 38453230 - 38453318
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctact 570  Q
    ||||||||||||||||||||||||||| ||| | | ||||||||  |||  | ||| |||||||| |||||||   ||||||||||||||    
T  38453230 tatgatatgatctccaactttcacctccaaggtag-actacttctccttccgctgatgttacattccatatactccgtcttgcttctact 38453318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 483 - 511
Target Start/End: Complemental strand, 28317416 - 28317388
Alignment:
Q  483 tgatatgatctccaactttcacctctaag 511  Q
    |||||||||||||||||||||||||||||    
T  28317416 tgatatgatctccaactttcacctctaag 28317388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 12 - 339
Target Start/End: Original strand, 25494045 - 25494371
Alignment:
Q  12 ttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccctaca 111  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  25494045 ttactatagaatctacatgttttctctatacatgtccaaaccacctaaacttattttccacaatatttatactataggtgctaccccaactatccctaca 25494144  T
Q  112 atgttgccatttctaatcttatcccatctaata-tcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttcttag 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  25494145 atgttgccatttctaatcttatcccatctaatattcaccacacatccaacgcaacatccccatctccacacacttactttattctcttgttggttcttaa 25494244  T
Q  211 ctgccaatactttgttccataaaacatctttgtactggcaactgtctggtannnnnnnncatttcaacttaaacggtacgtttgtataacaaaaaacaca 310  Q
    |  || ||||||||||||||||||||||||||| |||||||||||||||||        ||||||||||||||||  |||||||||||||||||||||||    
T  25494245 ccaccgatactttgttccataaaacatctttgttctggcaactgtctggta--ttttttcatttcaacttaaacgacacgtttgtataacaaaaaacaca 25494342  T
Q  311 tgaggctcatctacatttcaacaatccaa 339  Q
    |||| ||| ||||||||||||||||||||    
T  25494343 tgagactcttctacatttcaacaatccaa 25494371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 453 - 612
Target Start/End: Original strand, 5258729 - 5258891
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| |||||||||||||||    |||||||||||||||||||||||| || ||| | || | |||||  |||||| |||||||||||| |||    
T  5258729 acccaagatatttaaactgtgtaacttggggtatgatatgatctccaactttcacttccaaggtagacccacttctccttttgctgaagttacattccat 5258828  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||  |||||||||||||||||  |  ||| | |||| ||||||| |||| |||||||||||    
T  5258829 atactttgtcttgcttctactcaggcggaagccatacgcttctaaggcttgcctccaggtctc 5258891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 572
Target Start/End: Complemental strand, 33495879 - 33495788
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    ||||||||||||| ||||||||||||| ||| | || |||||||  |||||| |||||||||||| |||||||  |||||||||||||||||    
T  33495879 tatgatatgatcttcaactttcacctccaaggtagacctacttctccttttgatgaagttacattccatatactctgtcttgcttctactca 33495788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 572
Target Start/End: Original strand, 10100436 - 10100558
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||   ||||| | |||||||||| |||    
T  10100436 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctcattttgctaaagttacattccat 10100535  T
Q  550 ataccatgtcttgcttctactca 572  Q
    ||||   ||||||||||||||||    
T  10100536 atactccgtcttgcttctactca 10100558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 572
Target Start/End: Complemental strand, 5631489 - 5631398
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    |||||||||||||| |||||||||||  ||| | || | |||||  |||||| |||||||||||| |||||||  |||||||||||||||||    
T  5631489 tatgatatgatctctaactttcacctgcaaggtagacccacttctccttttgctgaagttacattccatatactttgtcttgcttctactca 5631398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 486 - 599
Target Start/End: Complemental strand, 26291451 - 26291336
Alignment:
Q  486 tatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacat--tacatataccatgtcttgcttctactcaaacaaaagtct 583  Q
    |||||| |||||||||||||| | || |  ||||||| || ||||||||||||||||||  || ||||||  ||||||| ||||||||| || ||| ||     
T  26291451 tatgatatccaactttcacctttcaggtacaactactacgccttttgttgaagttacattatatatatactttgtcttgtttctactcagacgaaattca 26291352  T
Q  584 tacggttctaagactt 599  Q
    |||| |||||||||||    
T  26291351 tacgcttctaagactt 26291336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 572
Target Start/End: Original strand, 20428246 - 20428337
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    |||||||||||||||||||||||||||  || | || ||| |||  |||||| |||||||||||| |||||||   |||||||||| |||||    
T  20428246 tatgatatgatctccaactttcacctcctaggtagacctaattctccttttgctgaagttacattccatatactccgtcttgcttccactca 20428337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 608234 - 608047
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttcca-caatatttatacaaaaggtgctaccccaactatccctacaatgttgcca 120  Q
    ||||||| || |||| | ||||||||||||||| |||| ||||||||| | |||  ||| ||| | ||||| |||||  ||| || |||  ||| || ||    
T  608234 atctacaggtcttctctctacatgtccaaaccatctaagcctattttctatcaacttttctactataggtgataccctcactctctcta--atggtgtca 608137  T
Q  121 tttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaa-acttactttattctcttgttggttctta 209  Q
    || |||||| ||||| ||||| | | ||||| ||||||||| ||||||| ||||||| | | ||||||||||||||| |||||| |||||    
T  608136 ttcctaatcctatcctatctagtcttaccactcatccaacggaacatcctcatctccgctacacttactttattctcgtgttggctctta 608047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 531
Target Start/End: Complemental strand, 3632688 - 3632638
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtctttt 531  Q
    ||||||||||||||||||||||||||| ||| | |||||||||||| ||||    
T  3632688 tatgatatgatctccaactttcacctcaaaggtagaactacttcgtatttt 3632638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 177
Target Start/End: Original strand, 9593897 - 9594073
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaat-atttatacaaaaggtgctaccccaa------ 100  Q
    |||||||||| |  |||||||||| |||| | |||||| ||||||||||||| ||||||||| || ||  ||| ||| || |||||||||||||          
T  9593897 cttcttactacagcatctacatgtcttctctctacatgcccaaaccacctaagcctattttctaccatcttttctactaatggtgctaccccaactccct 9593996  T
Q  101 ctatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctcc 177  Q
    || || ||  |||| || |||| |||||| |||||| |||| | | ||||| ||||||||||||||||| |||||||    
T  9593997 ctctctctctaatggtgtcattcctaatcctatcccgtctagtcttaccactcatccaacgcaacatcctcatctcc 9594073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 453 - 572
Target Start/End: Complemental strand, 9706479 - 9706357
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||| ||| ||| |  | | |||||  |||||| |||||||||||| |||    
T  9706479 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcatctccaaggtatacccacttctccttttgctgaagttacattccat 9706380  T
Q  550 ataccatgtcttgcttctactca 572  Q
    ||||    |||||||||||||||    
T  9706379 atactccatcttgcttctactca 9706357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 569
Target Start/End: Complemental strand, 27790823 - 27790740
Alignment:
Q  486 tatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctac 569  Q
    ||||| |||| || |||||||| | | | |||||||||   ||||||||||||||||| | |||||||| ||||||||||||||    
T  27790823 tatgacctcccaccttcacctccatggtagaactacttatccttttgttgaagttacactccatataccctgtcttgcttctac 27790740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 33084069 - 33083987
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    |||||||||||||||| || ||  ||| | | ||||||||||  ||||||||||| | | ||||||||||||||||| |||||    
T  33084069 aggtgctaccccaactctctctctaatatcgtcatttctaattctatcccatctagtcttaccacacatccaacgcagcatcc 33083987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 33496194 - 33496076
Alignment:
Q  88 ggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctcc-acaaactta 186  Q
    ||||||||||| |||||| ||  |||| || ||||||||||||||||| || |||| | ||||  ||||||| ||||||||  |||||||   | |||||    
T  33496194 ggtgctacccctactatctctgtaatggtgtcatttctaatcttatcctatttaatcttaccattcatccaatgcaacatcatcatctccgttacactta 33496095  T
Q  187 ctttattctcttgttggtt 205  Q
    ||| |||||| ||||||||    
T  33496094 cttgattctcatgttggtt 33496076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 300 - 353
Target Start/End: Original strand, 5258635 - 5258688
Alignment:
Q  300 caaaaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatga 353  Q
    ||||||||||||||||||| ||| ||||||||| | ||| ||||||||| ||||    
T  5258635 caaaaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatga 5258688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 7513286 - 7513335
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatc 168  Q
    |||||| ||||||||| |||||| | | ||||||||||||||||||||||    
T  7513286 catttcaaatcttatctcatctagtcttaccacacatccaacgcaacatc 7513335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 24665887 - 24665830
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatattt 79  Q
    ||||||| || |||| | |||||||||||||||||||| ||||||||| || ||||||    
T  24665887 atctacaggtcttctctctacatgtccaaaccacctaagcctattttctaccatattt 24665830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 168
Target Start/End: Original strand, 33998307 - 33998356
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatc 168  Q
    ||||||||||| |||| |||||| | | ||||||||||||||||||||||    
T  33998307 catttctaatcctatcacatctagtcttaccacacatccaacgcaacatc 33998356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 459 - 622
Target Start/End: Complemental strand, 23979926 - 23979760
Alignment:
Q  459 gatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgt 558  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  23979926 gatatctaaattgtgtaacttctatgatatgatctccaactttcacctctaaggttgaactactttgtcttttgttgaagttacattacatataccatgt 23979827  T
Q  559 cttgcttctactcaaacaaaagtcttacggtt---ctaagacttgactccaggtctcctacatccca 622  Q
    ||||||| ||||||||||||||||||||| ||   |||||||||||||||| |||||| ||||||||    
T  23979826 cttgcttttactcaaacaaaagtcttacgtttctactaagacttgactccaagtctccaacatccca 23979760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 20077042 - 20077168
Alignment:
Q  41 acatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatct 140  Q
    |||||| ||||||||||||||||||||| || ||||||||||| | | ||| ||||||| ||||| | ||||||||  |||||||||||| ||| |||||    
T  20077042 acatgttcaaaccacctaaacctattttgcagaatatttatactatatgtgttaccccatctatctcaacaatgttttcatttctaatctcatctcatct 20077141  T
Q  141 aatatcaccacacatccaacgcaacat 167  Q
    ||| | |||||||||||||| ||||||    
T  20077142 aatgttaccacacatccaacacaacat 20077168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 32759633 - 32759465
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatc 139  Q
    ||||||||||||||||||||||||||||| |||||||||||||  | |||| || ||||||| ||| ||||||| ||| ||||| |||||||||| ||||    
T  32759633 tacatgtccaaaccacctaaacctatttttcacaatatttatattataggtacttccccaaccatctctacaatattgtcatttataatcttatcacatc 32759534  T
Q  140 taatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttctta 209  Q
     ||| | || | |||| |||| |||||| | ||||||| || | | ||||||||  | ||||||||||||    
T  32759533 caattttacaatacattcaacacaacat-ctcatctccgcacaataactttattaccatgttggttctta 32759465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 612
Target Start/End: Complemental strand, 20318694 - 20318532
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | ||||||||||  |||  | |||||||||||| |||    
T  20318694 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagaactacttctccttccgctgaagttacattccat 20318595  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||||||||||||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  20318594 atactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctc 20318532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 28977467 - 28977559
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||||||||||||||||||||||||| | || |||||||  |||  |||||||||||||| |||||||   |||||||||||||||||    
T  28977467 tatgatatgatctccaactttcacctctaaggtagacctacttctccttccgttgaagttacattccatatactccgtcttgcttctactcaa 28977559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 594
Target Start/End: Complemental strand, 27602 - 27489
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||||||||||||||||| |||    |||||||||| || |||||||||||||||| | |||||  |||||||||| ||||||| |  |||    
T  27602 tatgatatgatctccaactttcacctccaaggcataactacttcgcctattgttgaagttacattccctatactctgtcttgcttttactcaagcggaag 27503  T
Q  581 tcttacggttctaa 594  Q
    || |||| ||||||    
T  27502 tcctacgcttctaa 27489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 612
Target Start/End: Complemental strand, 1274968 - 1274806
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||| ||| ||| | || |||||||  |||| | |||||||||||| |||    
T  1274968 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcatctccaaggtagacctacttctcctttcgctgaagttacattccat 1274869  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||||||||||||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  1274868 atactccgtcttgcttctactcaaccggaatccatacgcttctaaggcttgcctccaggtctc 1274806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 572
Target Start/End: Complemental strand, 3301552 - 3301430
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || | |||||  |||||| |||||||||||| |||    
T  3301552 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccat 3301453  T
Q  550 ataccatgtcttgcttctactca 572  Q
    ||||   ||||||||||||||||    
T  3301452 atactccgtcttgcttctactca 3301430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 612
Target Start/End: Original strand, 1288199 - 1288330
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||||||||||||||||| ||| | ||  ||||||  |||  | |||||||||||| |||||||   ||||||||||||||||| || ||     
T  1288199 tatgatatgatctccaactttcacctccaaggtagacttacttctccttccgctgaagttacattccatatactccgtcttgcttctactcaagcagaat 1288298  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  1288299 ccatacgcttctaaggcttgtctccaggtctc 1288330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 83
Target Start/End: Complemental strand, 23980037 - 23979962
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatac 83  Q
    ||||||||||||  ||||||| | ||||| | |||||||||||||||||||||||||||||||||  |||||||||    
T  23980037 cttcttactatagaatctacagggtttctctctacatgtccaaaccacctaaacctattttccacggtatttatac 23979962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 573
Target Start/End: Original strand, 2076053 - 2076176
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | ||||| ||||  |||  | |||||||||||| |||    
T  2076053 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagaactgcttctccttccgctgaagttacattccat 2076152  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
     |||  ||||||||||||||||||    
T  2076153 gtactctgtcttgcttctactcaa 2076176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 572
Target Start/End: Complemental strand, 3394413 - 3394292
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || | |||||  |||||| |||| ||||||| |||    
T  3394413 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaa-ttacattccat 3394315  T
Q  550 ataccatgtcttgcttctactca 572  Q
    ||||  |||||||||||||||||    
T  3394314 atactctgtcttgcttctactca 3394292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 553
Target Start/End: Original strand, 16348012 - 16348084
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatatac 553  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||||| |||||||||||| |||||||    
T  16348012 tatgatatgatctccaactttcacctccaaggtagacctacttctccttttgctgaagttacatttcatatac 16348084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 272 - 363
Target Start/End: Original strand, 1288046 - 1288137
Alignment:
Q  272 tttcaacttaaacggtacgtttgtataacaaaaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    |||||||||||| ||||| ||  |||  || |||||||||||||||| ||| ||||||||| ||||||||||||||| |||  |||||||||    
T  1288046 tttcaacttaaatggtactttcttatcgcacaaaacacatgaggctcttctccatttcaaccatccaacttgaatacgatggcttacatctg 1288137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 619
Target Start/End: Complemental strand, 37124242 - 37124103
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttc-gtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaa 579  Q
    |||||| |||||||||||||||||||||||| | ||| ||||||    ||||| |||| ||||||| |||||||  | |||||||||| |||| |  |||    
T  37124242 tatgatttgatctccaactttcacctctaaggtagaaatacttcacatttttgctgaaattacattccatatactctatcttgcttctgctcagatgaaa 37124143  T
Q  580 gtcttacggttctaagacttgactccaggtctcctacatc 619  Q
     ||||||| |||||||||||| |||||  ||||| |||||    
T  37124142 atcttacgcttctaagacttgtctccaattctccaacatc 37124103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 573
Target Start/End: Original strand, 12492966 - 12493089
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||| ||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  12492966 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaacttttacctccaaggtagagctacttctccttccgctgaagttacattccat 12493065  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  12493066 atactccgtcttgcttctactcaa 12493089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 573
Target Start/End: Complemental strand, 24178196 - 24178104
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    |||||||||||||||||||||||| || ||| | || |||||||  |||  | |||||||||||| |||||||   |||||||||||||||||    
T  24178196 tatgatatgatctccaactttcacttccaaggtagacctacttctccttccgctgaagttacattccatatactccgtcttgcttctactcaa 24178104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 208
Target Start/End: Complemental strand, 7678467 - 7678369
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctt 208  Q
    ||||||| ||||||||||| ||||| ||||| | |  ||||| |||||||||||||||| ||||||||| | ||||  | ||||||| |||||||||||    
T  7678467 aatgttgtcatttctaatcctatcctatctagtcttgccacagatccaacgcaacatcctcatctccactacacttgttctattctcgtgttggttctt 7678369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 571
Target Start/End: Original strand, 27302557 - 27302647
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactc 571  Q
    ||||||||||||||||||  ||||||  ||| | |||||||||   ||||||||||||||||||| |||||||   |||||| ||||||||    
T  27302557 tatgatatgatctccaacactcaccttcaaggtagaactactttaccttttgttgaagttacattccatatactcagtcttgtttctactc 27302647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 82
Target Start/End: Original strand, 33158022 - 33158096
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttata 82  Q
    |||||||||| |  ||||||||||||||| | |||| || ||||||||||||||| | | |||||||||||||||    
T  33158022 cttcttactacagaatctacatgttttctctctacacgttcaaaccacctaaaccaactatccacaatatttata 33158096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 3394504 - 3394444
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||||||| ||||||||| | ||| ||||||||| |||| |||||||||    
T  3394504 aaaacacctgaggctcatctccatttcaaccacccagcttgaatacgatgatttacatctg 3394444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 21093727 - 21093664
Alignment:
Q  147 accacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctta 209  Q
    ||||||||| ||||||||||||| ||| ||||| | ||||| ||||||||| ||||||||||||    
T  21093727 accacacatacaacgcaacatcctcatatccactacacttattttattctcgtgttggttctta 21093664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 11002694 - 11002781
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||||||||||| |||| || |||  |||||| ||||||||||  ||||||||||  | | |||||||||||| |||||||||| ||||||    
T  11002694 aggtgctacccgaactctctcta--atgttgtcatttctaattctatcccatctcgtcttaccacacatccagcgcaacatcctcatctc 11002781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 7359465 - 7359521
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatattt 79  Q
    |||||||| | |||| | |||||| |||||||||||||||||||||||||| ||||||    
T  7359465 atctacatatcttctctctacatg-ccaaaccacctaaacctattttccaccatattt 7359521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 10639000 - 10638877
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||| ||||||||||||||| ||| | || |||||||  |||    |||||||||||| |||    
T  10639000 acccaagatatttaaaccgtgtaacttggggtatgatatgatttccaactttcacctccaaggtagacctacttctccttccactgaagttacattccat 10638901  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   ||||| |||||||||||    
T  10638900 atactccgtctttcttctactcaa 10638877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 576
Target Start/End: Complemental strand, 35685485 - 35685428
Alignment:
Q  519 tacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaaca 576  Q
    |||| ||||||||| | || |||||||||||||||  |||||||||||| ||||||||    
T  35685485 tactacgtcttttgctaaaattacattacatatactttgtcttgcttctgctcaaaca 35685428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 2075962 - 2076022
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||| ||| ||||||||| | ||||||||||||| |||  |||||||||    
T  2075962 aaaacacctgaggctcttcttcatttcaaccacccaacttgaatacgatggcttacatctg 2076022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 21952330 - 21952274
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatct 175  Q
    |||||||||||||||| | |||| | | ||||||||| ||||||||||||| |||||    
T  21952330 catttctaatcttatctcgtctagtcttaccacacatgcaacgcaacatcctcatct 21952274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 1e-52; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 8 - 353
Target Start/End: Original strand, 16273012 - 16273353
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccc 107  Q
    ||||||||||||  ||||||| ||||||| | || |||| |||||||||||||||||||||||||||||||||||  | ||||| ||| ||||||||||     
T  16273012 cttcttactatagaatctacaagttttctctctaaatgtacaaaccacctaaacctattttccacaatatttataatataggtgttacaccaactatcct 16273111  T
Q  108 tacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttct 207  Q
    |||||||||| |||||||||||| ||| |||||| | | |||||||||||||||||||||  |||||||| || ||||||| ||||||| ||||  ||||    
T  16273112 tacaatgttgtcatttctaatctcatctcatctagtcttaccacacatccaacgcaacattgccatctccgcacacttactatattctcgtgttaattct 16273211  T
Q  208 tagctgccaatactttgttccataaaacatctttgtactggcaactgtctggtannnnnnnncatttcaacttaaacggtacgtttgtataacaaaaaac 307  Q
    || | | ||||||| |||| || |||||||| |||| |  ||||||||||||||        || ||||||||||| |  |||||||||| |||||||||    
T  16273212 taaccgtcaatactctgtttca-aaaacatcattgttccagcaactgtctggta-tttttttcagttcaacttaaatgacacgtttgtatcacaaaaaac 16273309  T
Q  308 acatgaggctcatctacatttcaacaatccaacttgaatacaatga 353  Q
       |||| |||  ||| |||||||| |||| |||||||||||||||    
T  16273310 ggctgagactc--ctatatttcaaccatcctacttgaatacaatga 16273353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 13 - 215
Target Start/End: Original strand, 52633369 - 52633571
Alignment:
Q  13 tactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccctacaa 112  Q
    |||||||  ||||||| ||||||| | |||||||||||| ||| ||||| ||||||| ||| ||||||||| | ||||| || | |||||||| ||||||    
T  52633369 tactatagaatctacaagttttctctctacatgtccaaagcacttaaacttattttcaacagtatttatactataggtgttatctcaactatctctacaa 52633468  T
Q  113 tgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttcttagct 212  Q
    ||||| |||||||| ||||||| |||||| | | ||| ||||| ||||||||||||| |||||||||| ||||||||||||||| ||| |||||||| ||    
T  52633469 tgttgtcatttctagtcttatcacatctagtcttaccgcacattcaacgcaacatcctcatctccacacacttactttattctcgtgtcggttcttaact 52633568  T
Q  213 gcc 215  Q
    |||    
T  52633569 gcc 52633571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 440 - 606
Target Start/End: Original strand, 52641020 - 52641186
Alignment:
Q  440 gttgaaagaatgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagt 539  Q
    ||||||||||| ||||||  |||| |||| |||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||| ||||| |    
T  52641020 gttgaaagaatcaacccaatatatttaaattgtgtaacttgtatgatatgatctccaactttcacctctaaggtcgaactacttcgccttttattgaaat 52641119  T
Q  540 tacattacatataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactcca 606  Q
    |||| ||||||||  |||| |||||| ||||||||| ||| || |||| ||| |||||||| |||||    
T  52641120 tacactacatatattatgtattgcttttactcaaacgaaattcgtacgcttccaagacttgtctcca 52641186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 449 - 600
Target Start/End: Original strand, 32066846 - 32066997
Alignment:
Q  449 atgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattaca 548  Q
    |||||||||  |||| ||||||||||||||| ||||||||||||||||| ||||||||||||| | ||||||||||  |||||| | || ||||||||||    
T  32066846 atgaacccaaaatatttaaactgtgtaacttgtatgatatgatctccaattttcacctctaaggtagaactacttcaccttttgctaaaattacattaca 32066945  T
Q  549 tataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttg 600  Q
    ||||| ||||| |||||||||||| |  |||||| |||| ||||||||||||    
T  32066946 tatactatgtcatgcttctactcatatgaaagtcatacgcttctaagacttg 32066997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 448 - 561
Target Start/End: Original strand, 16273406 - 16273519
Alignment:
Q  448 aatgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattac 547  Q
    |||||||| | ||||| |||| |||||||||| ||||||||||||||||||||||| ||||||| |  ||||| ||| |||||||||||| |||||||||    
T  16273406 aatgaaccaaagatatttaaattgtgtaacttgtatgatatgatctccaactttcatctctaaggtcaaactatttcatcttttgttgaaattacattac 16273505  T
Q  548 atataccatgtctt 561  Q
    |||||| |||||||    
T  16273506 atatactatgtctt 16273519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Complemental strand, 9002443 - 9002338
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccc 107  Q
    |||||||||| || ||||||| ||||| | | ||||||||||||| ||||||||||||||||||||||||||| ||   ||  ||||||||||||||| |    
T  9002443 cttcttactacaaaatctacaagttttttctctacatgtccaaactacctaaacctattttccacaatatttacactgtagacgctaccccaactatctc 9002344  T
Q  108 tacaat 113  Q
    ||||||    
T  9002343 tacaat 9002338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 1210448 - 1210325
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| |||||||||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  1210448 acccaagatatttaaactgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccat 1210349  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  1210348 atactccgtcttgcttctactcaa 1210325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 8671623 - 8671500
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  ||| || |||||||||||| |||    
T  8671623 acccaagatatttaaaccgtgtaacttagggtatgatatgatctccaactttcacctccaaggtagacctacttctccttctgctgaagttacattccat 8671524  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  8671523 atactccgtcttgcttctactcaa 8671500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 572
Target Start/End: Original strand, 32083355 - 32083446
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    ||||||||||||||||||||||||||| ||| | || | |||||  |||||| |||||||||||| |||||||   ||||||||||||||||    
T  32083355 tatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccatatactccgtcttgcttctactca 32083446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 612
Target Start/End: Original strand, 49348004 - 49348135
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | ||||||||||||  ||||||   ||||||||||||||||| || ||     
T  49348004 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattcgatatactccgtcttgcttctactcaagcagaat 49348103  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  49348104 ccatacgcttctaaggcttgcctccaggtctc 49348135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 573
Target Start/End: Original strand, 51441343 - 51441466
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| |||||||||||||||    ||||||||||||||||||||||||||  ||| | || |||||||  |||  | |||||||||||| |||    
T  51441343 acccaagatatttaaactgtgtaacttggggtatgatatgatctccaactttcaccttcaaggtagacctacttctccttccgctgaagttacattccat 51441442  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  51441443 atactccgtcttgcttctactcaa 51441466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 459 - 622
Target Start/End: Complemental strand, 40419378 - 40419212
Alignment:
Q  459 gatatctaaactgtgtaacttct---atgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatatacca 555  Q
    ||||| ||||||||||||||| |   ||||||||||||||||||||||||| || | | ||| | ||| | |||||| | || ||||||| ||||||| |    
T  40419378 gatatttaaactgtgtaacttgtggtatgatatgatctccaactttcacctttacgctagaaatgctttgccttttgctaaaattacattccatatacta 40419279  T
Q  556 tgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctcctacatccca 622  Q
    |||| ||||||||||| | | |||  | |||| ||||||| |||  |||||||||||| || |||||    
T  40419278 tgtcgtgcttctactcgagcgaaatccatacgtttctaaggcttatctccaggtctccaacctccca 40419212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 43240991 - 43241083
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||||||   |||||||||||||||||    
T  43240991 tatgatatgatctccaactttcacctccaaggtagatctacttctccttccgctgaagttacattccatatactccgtcttgcttctactcaa 43241083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 612
Target Start/End: Complemental strand, 51601761 - 51601599
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  51601761 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccat 51601662  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||||||||| ||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  51601661 atactccgtcttgcttttactcaagcggaatccatacgcttctaaggcttgcctccaggtctc 51601599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 273 - 348
Target Start/End: Original strand, 52640883 - 52640958
Alignment:
Q  273 ttcaacttaaacggtacgtttgtataacaaaaaacacatgaggctcatctacatttcaacaatccaacttgaatac 348  Q
    |||||||||||| || | ||||||||||||||| ||  |||||||| ||| |||||||||||| ||||||||||||    
T  52640883 ttcaacttaaacagtgcatttgtataacaaaaagcatctgaggctcttcttcatttcaacaattcaacttgaatac 52640958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 453 - 622
Target Start/End: Complemental strand, 28528284 - 28528112
Alignment:
Q  453 acccaggatatctaaactgtgtaacttct---atgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||||||||||||| |   ||| |||||||||||||||||||||||| | | |||   ||||| || ||| | ||  || ||  |||    
T  28528284 acccaagatatttaaactgtgtaacttgtggtatgctatgatctccaactttcacctctaggctagaaacgcttcgcctcttgctaaaactatatcccat 28528185  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctcctacatccca 622  Q
    ||||  |||||||||||||||||  |||||||| || | |||||||||||| ||||| |||||| || |||||    
T  28528184 atactttgtcttgcttctactcaggcaaaagtcatatgtttctaagacttgtctccaagtctccaacctccca 28528112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 303 - 360
Target Start/End: Original strand, 34827590 - 34827647
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacat 360  Q
    |||||||||||||||| ||| ||||||||| || ||||||||||||||||| ||||||    
T  34827590 aaaacacatgaggctcttctccatttcaaccattcaacttgaatacaatgatttacat 34827647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 35829003 - 35829095
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    |||||||||||||| | |||||||||| ||| | ||||||||  |||||||| | || ||||||| |||||||  |||||||||| |||||||    
T  35829003 tatgatatgatctctagctttcacctccaaggtagaactactatgtcttttgctaaaattacatttcatatactttgtcttgcttgtactcaa 35829095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 15085993 - 15085822
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    ||||||||||||||| |||| ||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| || |||| |||||| ||||| ||    
T  15085993 tacatgtccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctat 15085894  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctta 209  Q
    ||| | | ||||| | |||| |||||||||| ||||||| | | |||||||||| |||| |||||| |||||    
T  15085893 ctagtcttaccactcgtccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctctta 15085822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 481 - 569
Target Start/End: Original strand, 37463475 - 37463560
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctac 569  Q
    ||||||||||||||||||||||||||| ||| | ||   ||| || |||||| |||||||||||| |||||||  ||||||| ||||||    
T  37463475 tatgatatgatctccaactttcacctccaaggtaga---actccggcttttgctgaagttacattccatatactctgtcttgtttctac 37463560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 72
Target Start/End: Complemental strand, 8796268 - 8796236
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac 72  Q
    |||||||||||||||||||||||||||||||||    
T  8796268 tacatgtccaaaccacctaaacctattttccac 8796236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 482 - 566
Target Start/End: Complemental strand, 52421101 - 52421017
Alignment:
Q  482 atgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttc 566  Q
    ||||||||||||| ||||||||||| |||| | ||  ||||||  |||||| |||| || |||| |||||| |||||||||||||    
T  52421101 atgatatgatctctaactttcacctataaggtagagatacttcaccttttgctgaaattccatttcatatatcatgtcttgcttc 52421017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 696328 - 696157
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    ||||||||||| ||| |||| ||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| || |||| |||||| |||||  |    
T  696328 tacatgtccaagccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgt 696229  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctta 209  Q
    ||| | | ||||| |||||| |||||||||| ||||||| | | |||||||||| |||| |||||| |||||    
T  696228 ctagtcttaccactcatccagcgcaacatcctcatctccgctacacttactttactctcgtgttggctctta 696157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 202
Target Start/End: Original strand, 32231159 - 32231341
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgcca 120  Q
    ||||||| || |||| | |||||| |||||||| |||| ||||||||| || ||| ||| ||| | |||||||||||| ||| || ||  |||| || ||    
T  32231159 atctacaagtcttctctctacatgcccaaaccatctaagcctattttctaccaatttttctactataggtgctacccccactctctctctaatggtgtca 32231258  T
Q  121 tttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttg 202  Q
    || |||||| ||||   |||||| | ||||| |||| | |||||||||| |||||| || | |||||||| |||||| |||||    
T  32231259 ttcctaatcctatcatgtctaatcttaccactcatctagcgcaacatcctcatctctactacacttacttgattctcgtgttg 32231341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 1210804 - 1210667
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||| |||||||| |||| ||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| || |||| |||||| |||||  |    
T  1210804 tacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgt 1210705  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||| | | ||||| ||||||||||||||||| ||||||    
T  1210704 ctagtcttaccactcatccaacgcaacatcctcatctc 1210667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 32404720 - 32404781
Alignment:
Q  11 cttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccac 72  Q
    |||||||||  ||||||| || |||| | ||||| |||||||||||||| ||||||||||||    
T  32404720 cttactatagaatctacaggtcttctctctacatatccaaaccacctaagcctattttccac 32404781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 205
Target Start/End: Original strand, 46226611 - 46226672
Alignment:
Q  145 tcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggtt 205  Q
    ||||||| ||||||||||||||||  ||||||| | |||||||||| |||||| ||||||||    
T  46226611 tcaccactcatccaacgcaacatcatcatctccgctaaacttacttgattctcgtgttggtt 46226672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 52442780 - 52442857
Alignment:
Q  92 ctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    ||||||||||| || || |||||||  ||||||||||||||||   |||| | | |||||||||||||| ||||||||    
T  52442780 ctaccccaactctctctccaatgttctcatttctaatcttatcttgtctagtcttaccacacatccaacacaacatcc 52442857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 16822322 - 16822382
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac 179  Q
    ||||||||||| ||||  ||||| ||| |||||||||||||| |||||||| ||| |||||    
T  16822322 catttctaatcctatcttatctagtattaccacacatccaacacaacatcctcatttccac 16822382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 429
Target Start/End: Complemental strand, 27445640 - 27445596
Alignment:
Q  385 ttacatctgattttatttctccattattttgtactatgaacccaa 429  Q
    ||||||||| || ||||||||||| ||||||||||||| ||||||    
T  27445640 ttacatctgcttctatttctccatcattttgtactatggacccaa 27445596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 29578234 - 29578282
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacat 167  Q
    |||||||||||||||| | |||| ||| |||||||||||||| ||||||    
T  29578234 catttctaatcttatcgcttctattattaccacacatccaacacaacat 29578282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 351
Target Start/End: Original strand, 46226770 - 46226818
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaat 351  Q
    ||||||| ||| |||| ||| ||||||||| ||||||||||||||||||    
T  46226770 aaaacacttgatgctcttctccatttcaaccatccaacttgaatacaat 46226818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 72
Target Start/End: Original strand, 48431601 - 48431661
Alignment:
Q  12 ttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccac 72  Q
    |||||| || ||||||| || |||| | |||||| ||||||||||||| ||||||||||||    
T  48431601 ttactacaaaatctacaagtcttctctctacatgcccaaaccacctaagcctattttccac 48431661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 2e-51; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 8 - 360
Target Start/End: Original strand, 17666234 - 17666583
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccc 107  Q
    |||||||||| |  ||||||||||||||  | ||||||||||||||||||||||||||||| |||||||||||||| | |||| ||| |||||||||| |    
T  17666234 cttcttactacataatctacatgttttccctctacatgtccaaaccacctaaacctatttttcacaatatttatactataggtactaacccaactatctc 17666333  T
Q  108 tacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttct 207  Q
    |||||||||| ||| | |||||||||| |||||| | | |||||||||| || ||||||| | |||| ||  | |  ||||||||| || ||||||||||    
T  17666334 tacaatgttgtcatatataatcttatctcatctagttttaccacacatcaaatgcaacattcacatccccttacaaatactttattatcatgttggttct 17666433  T
Q  208 tagctgccaatactttgttccataaaacatctttgtactggcaactgtctggtannnnnnnncatttcaacttaaacggtacgtttgtataacaaaaaac 307  Q
    ||  |||| | ||  | |||||||||| |||  ||  ||| |||||||||| ||        || ||||||||||| ||||||||||||| ||| |||||    
T  17666434 taaatgccca-acactcttccataaaatatcgatggtctgacaactgtctgata--tttttgcacttcaacttaaagggtacgtttgtatcacataaaac 17666530  T
Q  308 acatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacat 360  Q
    |||||| |||| ||| ||||||||||||||||||||||||| |||| ||||||    
T  17666531 acatgatgctcttctccatttcaacaatccaacttgaatacgatgatttacat 17666583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 449 - 622
Target Start/End: Original strand, 17667904 - 17668074
Alignment:
Q  449 atgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattaca 548  Q
    |||||||||  |||| |||||| | |||||| ||||||||||| ||||||||||||||||||| |  |||||||||| |||| |||||| ||||||||||    
T  17667904 atgaacccaatatatttaaactatataacttgtatgatatgatatccaactttcacctctaaggtataactacttcgccttt-gttgaaattacattaca 17668002  T
Q  549 tataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctcctacatccca 622  Q
    ||||  |||||||||||||||||| ||||||||| |||| |||||||||||| ||||| |||||| ||||||||    
T  17668003 tata--atgtcttgcttctactcagacaaaagtcatacgcttctaagacttgtctccaagtctccaacatccca 17668074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 43 - 345
Target Start/End: Original strand, 8917555 - 8917857
Alignment:
Q  43 atgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaa 142  Q
    |||| |||||||| |||||||||||||||||| | |||||| | ||||||||||| ||||||| | ||||||||| |||||||||||||||| ||| | |    
T  8917555 atgttcaaaccacgtaaacctattttccacaacaattatactataggtgctaccc-aactatctcaacaatgttgtcatttctaatcttatctcatatga 8917653  T
Q  143 tatcaccacacatccaacgcaacatccccatctccacaaacttactt--tattctcttgttggttcttagctgcc-aatactttgttccataaaacatct 239  Q
    | | |||||||||| |||  ||||||| | ||||| || ||| ||||  ||||||  |||||||||||| | ||| || ||| ||||||||||||||||     
T  8917654 tcttaccacacatcgaacataacatccacgtctccgcacactcactttatattcttgtgttggttcttaaccgcctaacactatgttccataaaacatcg 8917753  T
Q  240 ttgtactggcaactgtctggtannnnnnnncatttcaacttaaacggtacgtttgtataacaaaaaacacatgaggctcatctacatttcaacaatccaa 339  Q
    |||  ||  ||| |||||| ||        |  ||||||||||||||| ||||||||| ||| ||||||| |||||||| |||  |||||||  ||||||    
T  8917754 ttggtctaacaattgtctgatatttatttac--ttcaacttaaacggtgcgtttgtatcacataaaacacttgaggctcttctcaatttcaattatccaa 8917851  T
Q  340 cttgaa 345  Q
    ||||||    
T  8917852 cttgaa 8917857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 450 - 600
Target Start/End: Original strand, 17666614 - 17666762
Alignment:
Q  450 tgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||| ||| |||||||||||| | ||| ||||||| |||||| |||| || ||||||||    
T  17666614 tgaacccaagatatttaaactgtgtaacttgtatgatatgatctctaacgttcacctctaagatagaaatacttcgccttttgatgaaattgcattacat 17666713  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttg 600  Q
    |||   ||||||||||||||||| || |||||| || | ||||||||||||    
T  17666714 ata--ttgtcttgcttctactcagacgaaagtcatatgcttctaagacttg 17666762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 481 - 572
Target Start/End: Complemental strand, 41427511 - 41427420
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    ||||||||||||| ||| |||||| | |||| | |||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||||    
T  41427511 tatgatatgatcttcaattttcacttttaaggtagaactacttcgttttttgctgaaattacatttcatataccatgtcttgcttctactca 41427420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 612
Target Start/End: Original strand, 23906880 - 23907042
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  |||||||||||||| |||    
T  23906880 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgttgaagttacattccat 23906979  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||||||||||||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  23906980 atactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctc 23907042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 612
Target Start/End: Original strand, 48174672 - 48174834
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  48174672 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccat 48174771  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||||||||||||||||| |  || || |||| ||||||| |||| |||||||||||    
T  48174772 atactccgtcttgcttctactcaagcggaattcatacgcttctaaggcttgcctccaggtctc 48174834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 612
Target Start/End: Original strand, 31960424 - 31960555
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||||||  |||||||||||||||||| |  ||     
T  31960424 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccatatactctgtcttgcttctactcaagcggaat 31960523  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  31960524 ccatacgcttctaaggcttgcctccaggtctc 31960555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 17668382 - 17668462
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacat 167  Q
    ||||||| ||||||| ||| ||||||||||| ||||| |||||||||| |||||| | | |||||||||||||||||||||    
T  17668382 aggtgcttccccaacaatctctacaatgttgtcatttataatcttatctcatctagttttaccacacatccaacgcaacat 17668462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 573
Target Start/End: Original strand, 27450752 - 27450875
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| |||||||||||||||    ||||||||||||||||||||||||||| ||| |  | | |||||  |||||| |||||||||||| ||     
T  27450752 acccaagatatgtaaactgtgtaacttggggtatgatatgatctccaactttcacctccaaggtatacccacttctccttttgctgaagttacattccaa 27450851  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  27450852 atactccgtcttgcttctactcaa 27450875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 612
Target Start/End: Complemental strand, 435932 - 435770
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  435932 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccat 435833  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||| ||||||||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  435832 atactccgtcgtgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctc 435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 54470281 - 54470129
Alignment:
Q  25 tacatgttttctttatacatgtccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccattt 123  Q
    ||||||| |||| | |||||| ||||||||| |||  ||| ||||||| || |||  ||| | |||||||||||||||| || ||  |||||||  ||||    
T  54470281 tacatgtcttctctctacatgcccaaaccacttaagtctagtttccaccatcttttctactataggtgctaccccaactctctctctaatgttgttattt 54470182  T
Q  124 ctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    | |||| ||||||||||| | | ||||||||||||| ||||||||| ||||||    
T  54470181 caaatcatatcccatctagtcttaccacacatccaatgcaacatcctcatctc 54470129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 17667123 - 17667269
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaactta 186  Q
    ||||||| ||||||||||| |||||| |||| ||||| ||||| |||| ||||||      |||||||||||||||||||| | ||||||| || | |||    
T  17667123 aggtgcttccccaactatctctacaaggttgtcatttataatcgtatcacatcta------ccacacatccaacgcaacattctcatctccgcacaatta 17667216  T
Q  187 ctttattctcttgttggttctt-agctgccaatactttgttccataaaacatc 238  Q
    ||||||| ||   ||||||||| | || |||| ||| |||| |||||||||||    
T  17667217 ctttattatcgatttggttcttaaactcccaacactatgtttcataaaacatc 17667269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 573
Target Start/End: Complemental strand, 56374993 - 56374870
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||| ||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  56374993 acccaagatatttaaaccgtgtaacttggggtatgatatgctctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccat 56374894  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  56374893 atactccgtcttgcttctactcaa 56374870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 31403250 - 31403372
Alignment:
Q  50 aaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaact--atcc--ctacaatgttgccatttctaatcttatcccatctaatat 145  Q
    |||||||||| |||| ||||||| || ||| ||| | ||||||||||||||||  |||   ||  ||||||| ||||||||||| |||||| |||||| |    
T  31403250 aaccacctaagcctagtttccaccatttttctactataggtgctaccccaactctatctgtctctaatgttgtcatttctaatcctatcccgtctaatct 31403349  T
Q  146 caccacacatccaacgcaacatc 168  Q
    |||||||||| |||| |||||||    
T  31403350 caccacacattcaactcaacatc 31403372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 553
Target Start/End: Original strand, 47265814 - 47265886
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatatac 553  Q
    |||||||||| |||||||||||||||| ||| | || |||||||  |||||| |||||||||||| |||||||    
T  47265814 tatgatatgacctccaactttcacctccaaggtagacctacttctccttttgctgaagttacatttcatatac 47265886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 48623137 - 48623229
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||| ||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||||||   |||||||||||||||||    
T  48623137 tatgatatgctctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccatatactccgtcttgcttctactcaa 48623229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 2588968 - 2588905
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatc 174  Q
    ||||||| ||||||||||| |||||| |||| | | ||||||||||||||||||||||| ||||    
T  2588968 aatgttgtcatttctaatcctatcccttctagtcttaccacacatccaacgcaacatcctcatc 2588905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 448 - 566
Target Start/End: Original strand, 8917906 - 8918025
Alignment:
Q  448 aatgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaacta-cttcgtcttttgttgaagttacatta 546  Q
    ||||||||||  |||| ||||||||||||||| ||| | ||||||||||  | ||||||||||| || |||||  || | ||||||  ||| ||||||||    
T  8917906 aatgaacccaatatatttaaactgtgtaacttgtattacatgatctccatatgtcacctctaaggttaaactatttttgccttttgcagaaattacatta 8918005  T
Q  547 catataccatgtcttgcttc 566  Q
    ||||||  ||||||||||||    
T  8918006 catataatatgtcttgcttc 8918025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 17900459 - 17900409
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    |||||||||| |||||||||||| | | |||||||||||||||||||||||    
T  17900459 catttctaattttatcccatctagtcttaccacacatccaacgcaacatcc 17900409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 44860841 - 44860783
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    ||||| ||||||||||||||||| ||||||| | | |||||||||||||| ||||||||    
T  44860841 aatgtagccatttctaatcttattccatctagtcttaccacacatccaacacaacatcc 44860783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 49 - 168
Target Start/End: Complemental strand, 33709974 - 33709849
Alignment:
Q  49 aaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatccca-----tctaa 142  Q
    |||||||||||||||| ||||||| || |||  ||| | ||||| |||||||||| || ||  ||||||||||||||||||| ||||| |     ||||     
T  33709974 aaaccacctaaacctagtttccaccatcttttctactataggtgttaccccaactctctctctaatgttgccatttctaatcctatcctatcatgtctag 33709875  T
Q  143 tatcaccacacatccaacgcaacatc 168  Q
    | | ||||||||||||||||||||||    
T  33709874 tcttaccacacatccaacgcaacatc 33709849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 1777625 - 1777717
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||||| ||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||||||   || ||||||||||||||    
T  1777625 tatgatatgatttccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccatatactccgtattgcttctactcaa 1777717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 3273225 - 3273173
Alignment:
Q  294 gtataacaaaaaacacatgaggctcatctacatttcaacaatccaacttgaat 346  Q
    |||| ||| |||||| ||||||||||||| ||||||||| |||||||||||||    
T  3273225 gtatcacataaaacaaatgaggctcatctccatttcaaccatccaacttgaat 3273173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 572
Target Start/End: Complemental strand, 39708125 - 39708038
Alignment:
Q  485 atatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    ||||||||||||| ||||||||| ||| | || ||| |||  |||||| |||||||| ||| |||||||   ||||||||||||||||    
T  39708125 atatgatctccaaatttcacctccaagatagacctaattctccttttgctgaagttatattccatatactccgtcttgcttctactca 39708038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 612
Target Start/End: Complemental strand, 53707466 - 53707335
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||| ||||||||||||| ||| | || |||||||  |||    ||||||||||||  ||||||   ||||||||||||||||| |  ||     
T  53707466 tatgatatgatcttcaactttcacctccaaggtagacctacttctccttccactgaagttacattcgatatactccgtcttgcttctactcaagcggaat 53707367  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  53707366 ccatacgcttctaaggcttgcctccaggtctc 53707335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 49739125 - 49739187
Alignment:
Q  147 accacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctt 208  Q
    |||||||||| |||||||||||||||| ||||| |  |||| |||| ||||||||||||||||    
T  49739125 accacacatctaacgcaacatccccatttccactacgcttattttactctcttgttggttctt 49739187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 7092411 - 7092472
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttc 69  Q
    |||| |||||||| |||||||||| |||| | || ||| ||||||||| |||||||||||||    
T  7092411 cttcatactataacatctacatgtcttctctctatatgcccaaaccacttaaacctattttc 7092472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 102
Target Start/End: Complemental strand, 28497566 - 28497486
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaact 102  Q
    ||||||| || |||| | |||||| ||||||||||||| ||| ||||||||||| |||  ||| ||||||||||||||||||    
T  28497566 atctacaagtcttctctctacatgcccaaaccacctaagcct-ttttccacaatcttttctactaaaggtgctaccccaact 28497486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 31960037 - 31960174
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||| |||||||| |||| ||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| || |||| |||||| |||||  |    
T  31960037 tacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcctgt 31960136  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||| | | ||||| ||||||||||||||||| ||||||    
T  31960137 ctagtcttaccactcatccaacgcaacatcctcatctc 31960174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 176
Target Start/End: Original strand, 33191119 - 33191208
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    |||||||||||| ||| || ||  |||| || |||| |||||| ||||| ||||||| | ||||| |||||| |||||||||| ||||||    
T  33191119 aggtgctacccccactctctctctaatggtgtcattcctaatcctatcctatctaatcttaccactcatccagcgcaacatcctcatctc 33191208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 553
Target Start/End: Complemental strand, 33226912 - 33226809
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || ||||||   |||  | |||||||||||| |||    
T  33226912 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttgtccttccgctgaagttacattccat 33226813  T
Q  550 atac 553  Q
    ||||    
T  33226812 atac 33226809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 215
Target Start/End: Original strand, 45205151 - 45205248
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaa-cttactttattctcttgttggttcttagctgcc 215  Q
    |||| |||||| |||||| |||| | | ||||| |||||||| |||||||| ||||||| | |  ||||||| |||||| |||||||||||| |||||    
T  45205151 cattcctaatcctatcccgtctagtcttaccactcatccaacacaacatcctcatctccgctacgcttacttgattctcgtgttggttcttaactgcc 45205248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 30807270 - 30807242
Alignment:
Q  481 tatgatatgatctccaactttcacctcta 509  Q
    |||||||||||||||||||||||||||||    
T  30807270 tatgatatgatctccaactttcacctcta 30807242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 43070059 - 43070115
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacat 167  Q
    ||||||| ||||||||||| |||||  |||||| | |||||||||||||| ||||||    
T  43070059 aatgttgtcatttctaatcctatcctgtctaatcttaccacacatccaacccaacat 43070115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 55768715 - 55768755
Alignment:
Q  31 ttttctttatacatgtccaaaccacctaaacctattttcca 71  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  55768715 ttttctctttacatgtctaaaccacctaaacctattttcca 55768755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 31 - 71
Target Start/End: Original strand, 55832971 - 55833011
Alignment:
Q  31 ttttctttatacatgtccaaaccacctaaacctattttcca 71  Q
    |||||| | |||||||| |||||||||||||||||||||||    
T  55832971 ttttctctttacatgtctaaaccacctaaacctattttcca 55833011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 31 - 360
Target Start/End: Original strand, 23087318 - 23087647
Alignment:
Q  31 ttttctttatacatgtccaaaccacctaaacctattttccacaatattt-atacaaaaggtgctaccccaactatccctacaatgttgccatttctaatc 129  Q
    |||||| | |||||||||||| |||||||||| |||||||||||||||| |||  | || |||| |  |||||||| ||||||| ||| |||||||||||    
T  23087318 ttttctctctacatgtccaaatcacctaaaccaattttccacaatattttatattatagatgctccttcaactatctctacaatattgtcatttctaatc 23087417  T
Q  130 ttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttcttagctg-ccaatactttgttcc 228  Q
    |||||| || || | | ||||||  |||| |||||||||||| ||||| || | ||||||||||||| |||||||||||| ||| |||| ||| ||||||    
T  23087418 ttatccaatgtagttttaccacaactccaccgcaacatccccttctccgcacaattactttattctcgtgttggttcttaactgtccaacactctgttcc 23087517  T
Q  229 ataaaacatctttgtactggcaactgtctggtannnnnnnncatttcaacttaaacggtacgtttgtataacaaaaaacacatgaggctcatctacattt 328  Q
    ||||| |||   ||| ||| ||||| || | ||         ||||||||||||| ||||||||||||| ||| |||||| | ||||||| | | |||||    
T  23087518 ataaatcatggatgttctgacaactctcagatattttttt--atttcaacttaaatggtacgtttgtatcacataaaacagacgaggctcttttccattt 23087615  T
Q  329 caacaatccaacttgaatacaatgaattacat 360  Q
    |||| ||| |||||||||||||||| ||||||    
T  23087616 caaccatctaacttgaatacaatgatttacat 23087647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 481 - 612
Target Start/End: Original strand, 33350416 - 33350547
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||||||||||||||||| ||| | || ||||||| ||||  | |||||||||||| |||||||   ||||||||||||||||| |  ||     
T  33350416 tatgatatgatctccaactttcacctccaaggtagacctacttcttcttccgctgaagttacattccatatacttcgtcttgcttctactcaagcggaat 33350515  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  33350516 ccatacgcttctaaggcttgcctccaggtctc 33350547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 41 - 209
Target Start/End: Complemental strand, 47848732 - 47848562
Alignment:
Q  41 acatgtccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatc 139  Q
    ||||| ||||||||||||| |||||||||||| || |||  ||| | ||| |||||||||||| || ||  ||||||  || |||| ||| |||||| ||    
T  47848732 acatgcccaaaccacctaagcctattttccaccatcttttctactataggcgctaccccaactctctctctaatgttatcacttctgatcctatcccgtc 47848633  T
Q  140 taatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctta 209  Q
    || | | |||||||||||||| |||||||| ||||||| | | ||||| ||||||||| ||||||||||||    
T  47848632 tagtcttaccacacatccaacacaacatcctcatctcccctagacttattttattctcgtgttggttctta 47848562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 572
Target Start/End: Complemental strand, 32630310 - 32630188
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || | |||||  |||||| |||||||||||| |||    
T  32630310 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccat 32630211  T
Q  550 ataccatgtcttgcttctactca 572  Q
    ||||   ||||||||||||||||    
T  32630210 atactccgtcttgcttctactca 32630188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 612
Target Start/End: Complemental strand, 31004896 - 31004765
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||| ||||| |||||||  |||||||||||||||||| |  ||     
T  31004896 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagtaacattccatatactctgtcttgcttctactcaagcggaat 31004797  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  31004796 ccatacgcttctaaggcttgcctccaggtctc 31004765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 612
Target Start/End: Complemental strand, 36651666 - 36651535
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    ||||||||||||||||||||||||||| ||| | || ||||||| ||||  | ||||||| |||| |||||||   ||||||||||||||||| |  ||     
T  36651666 tatgatatgatctccaactttcacctccaaggtagacctacttcttcttccgctgaagttccattccatatactccgtcttgcttctactcaagcggaat 36651567  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  36651566 ccatacgcttctaaggcttgcctccaggtctc 36651535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 612
Target Start/End: Complemental strand, 37616588 - 37616457
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaag 580  Q
    |||||||||||||||| |||||||||| ||| | || |||||||  ||| || |||||||||||| |||||||   ||||||||||||||||| |  ||     
T  37616588 tatgatatgatctccacctttcacctccaaggtagacctacttctccttctgctgaagttacattccatatactccgtcttgcttctactcaagcggaat 37616489  T
Q  581 tcttacggttctaagacttgactccaggtctc 612  Q
     | |||| ||||||| |||| |||||||||||    
T  37616488 ccatacgcttctaaggcttgcctccaggtctc 37616457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 176
Target Start/End: Original strand, 30200254 - 30200319
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||||||| ||||||||||| ||||||||||||| | |||||||||||||| |||||||| ||||||    
T  30200254 aatgttgtcatttctaatcatatcccatctaatcttaccacacatccaacacaacatcctcatctc 30200319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 453 - 573
Target Start/End: Original strand, 46356430 - 46356553
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  46356430 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccat 46356529  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  46356530 atactccgtcttgcttctactcaa 46356553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 39906989 - 39907081
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||||||   |||||||||||||||||    
T  39906989 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccatatactccgtcttgcttctactcaa 39907081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 515 - 622
Target Start/End: Original strand, 33572563 - 33572670
Alignment:
Q  515 gaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctcct 614  Q
    ||||||||| |  |||| ||||| ||| |||| ||||||  |||||||||||||||||  |||||||| |||| ||||||||||||  |||| ||||||     
T  33572563 gaactactttgcattttattgaaattatattatatatactctgtcttgcttctactcattcaaaagtcatacgcttctaagacttgtttccaagtctccg 33572662  T
Q  615 acatccca 622  Q
    ||||||||    
T  33572663 acatccca 33572670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 48736170 - 48736252
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    |||||||||||||||| || ||| ||||| | |||||||||| ||||| |||||| | | ||||||||| |||||||||||||    
T  48736170 aggtgctaccccaactctctctataatgtcgtcatttctaattttatctcatctagtcttaccacacattcaacgcaacatcc 48736252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 36869899 - 36869991
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||| ||||||||||||||||| | | | ||  |||||   |||||  |||||||||||| ||||||| |||||||||||||||||||    
T  36869899 tatgatatgctctccaactttcacctccagggtagacatactttcccttttcctgaagttacattccatatactatgtcttgcttctactcaa 36869991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 453 - 612
Target Start/End: Complemental strand, 49028970 - 49028808
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    |||||| |||||||||||||||||||| ||| | || |||||||  |||    |||||||||||| |||    
T  49028970 acccaagatatttaaaccgtgtaacttggggtatgatctgatctccaactttcacctccaaggtagacctacttctccttcccctgaagttacattccat 49028871  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||||||||||||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  49028870 atactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctc 49028808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 209
Target Start/End: Original strand, 25579387 - 25579465
Alignment:
Q  132 atcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctta 209  Q
    |||| ||||| ||| ||||||||||||||||||||||| ||||||| | |  |||| ||||||||| ||||||||||||    
T  25579387 atcctatctagtattaccacacatccaacgcaacatcctcatctcctctacgcttattttattctcgtgttggttctta 25579465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 43491367 - 43491230
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||| |||||||| |||| ||||||||| || ||| ||||||| | ||||| |||||| ||| || |  ||||| || |||| |||||| ||||||||    
T  43491367 tacatgcccaaaccatctaagcctattttctaccaatttttatactataggtgttacccctactctctccccaatggtgtcattcctaatcatatcccat 43491268  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||||| | ||| | |||||| | |||||||| ||||||    
T  43491267 ctaatcttaccgctcatccagcacaacatcctcatctc 43491230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 553
Target Start/End: Original strand, 24177805 - 24177877
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatatac 553  Q
    |||||||||||||||||| |||| ||  ||| | || ||||||| ||||||| |||||||||||| |||||||    
T  24177805 tatgatatgatctccaaccttcatctacaagctagacctacttcttcttttgctgaagttacattccatatac 24177877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 33072748 - 33072688
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||| ||| ||||||||| ||||||||||||||| |||  |||||||||    
T  33072748 aaaacacttgaggctcttctccatttcaaccatccaacttgaatacgatggcttacatctg 33072688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 471 - 622
Target Start/End: Original strand, 23087715 - 23087866
Alignment:
Q  471 gtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctact 570  Q
    ||||||||| |||||||||||||| | ||||||||||||||   |||||  |||  |||||| |||| ||| |||| |||||| ||||||   |||||||    
T  23087715 gtgtaacttgtatgatatgatctcaacctttcacctctaagaaagaacttattctccttttgctgaaattatattatatatactatgtctcatttctact 23087814  T
Q  571 caaacaaaagtcttacggttctaagacttgactccaggtctcctacatccca 622  Q
    || || | |||| |||  || |||||| |  ||||| |||||| ||||||||    
T  23087815 cagacgacagtcatacacttttaagacatctctccaagtctccaacatccca 23087866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 208
Target Start/End: Original strand, 36514478 - 36514598
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaactt 185  Q
    |||||||||||||||| || |||  |||||| | ||||||||  |||||| | || | | ||||||||||||||||||||||| ||||||  | | ||||    
T  36514478 aggtgctaccccaactctctcta--atgttgtcctttctaattctatcccgtttagtcttaccacacatccaacgcaacatcctcatctctgctacactt 36514575  T
Q  186 actttattctcttgttggttctt 208  Q
    | |||||| || |||||||||||    
T  36514576 aatttattttcgtgttggttctt 36514598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 39811968 - 39811886
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    ||||||| |||||||| || ||  ||||||| ||||||||||| |||| | |||| | | ||||||||||||| |||||||||    
T  39811968 aggtgctgccccaactctctctctaatgttgtcatttctaatcctatcacgtctagtcttaccacacatccaaagcaacatcc 39811886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 1740776 - 1740719
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    |||||||||||||| |||| ||| | | || |||||||||||||||||||| ||||||    
T  1740776 catttctaatcttaccccacctagtcttactacacatccaacgcaacatcctcatctc 1740719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 176
Target Start/End: Complemental strand, 11593971 - 11593882
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    |||||||||||| ||| || ||  |||| || |||| ||||||||||||  |||| | | ||||| ||||||||||||||||| ||||||    
T  11593971 aggtgctacccccactctctctcaaatggtgtcattcctaatcttatcctgtctagtcttaccactcatccaacgcaacatcctcatctc 11593882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 176
Target Start/End: Complemental strand, 31005282 - 31005145
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||| |||||||| |||||||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| ||  ||| |||||| |||||  |    
T  31005282 tacatgcccaaaccatctaaacctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgttattcctaatcctatcctgt 31005183  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||| | | ||||| ||||||||||||||||| ||||||    
T  31005182 ctagtcttaccactcatccaacgcaacatcctcatctc 31005145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 38135406 - 38135467
Alignment:
Q  11 cttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccac 72  Q
    ||||||| || ||||||  || |||| | |||||||||||||||||||| ||||||||||||    
T  38135406 cttactacaaaatctactggtcttctgtctacatgtccaaaccacctaagcctattttccac 38135467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 31005017 - 31004957
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||| ||| ||||||||| | ||||||||||||| |||  |||||||||    
T  31005017 aaaacacctgaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctg 31004957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 202
Target Start/End: Complemental strand, 34869479 - 34869315
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||| |||||||| |||| ||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| || |||| |||||| ||||   |    
T  34869479 tacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcctatcatgt 34869380  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttg 202  Q
    ||| | | ||||| ||||||||||||||||| |||||| || | |||||||| |||||| |||||    
T  34869379 ctagtcttaccactcatccaacgcaacatcctcatctctactacacttacttgattctcatgttg 34869315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 36102060 - 36102116
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacat 167  Q
    ||||||| |||||||||||| |||||||||| | | |||||||||| ||| ||||||    
T  36102060 aatgttgtcatttctaatctcatcccatctagtcttaccacacatcgaactcaacat 36102116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 37616710 - 37616650
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||| ||| ||||||||| | ||| |||||||||||||  |||||||||    
T  37616710 aaaacacttgaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctg 37616650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 46356339 - 46356399
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||| ||| ||||||||| | ||||||||||||| |||  |||||||||    
T  46356339 aaaacacctgaggctcttctccatttcaaccacccaacttgaatacgatggcttacatctg 46356399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 5e-39; HSPs: 32)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 449 - 619
Target Start/End: Original strand, 28300683 - 28300852
Alignment:
Q  449 atgaacccaggatatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattaca 548  Q
    ||||||||| ||||| ||||||||||||||| |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||| | |||||| |    
T  28300683 atgaacccaagatatttaaactgtgtaacttgtatgatatgatctccagctttcacctctaaggtcgaactacttcgtcttttgatgaaatcacattaaa 28300782  T
Q  549 tataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctcctacatc 619  Q
    ||||| ||||| |||||||||||  || |||||| |||  |||||||||||| ||||| |||||| |||||    
T  28300783 tatactatgtc-tgcttctactcggacgaaagtcatacccttctaagacttgtctccaagtctccaacatc 28300852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 8 - 238
Target Start/End: Original strand, 28300304 - 28300533
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctaccccaactatccc 107  Q
    |||||||||| |  |||||||| ||| || |  ||||||| |||||||||| || ||||||||||||||||||||| | ||||| |||  |||||||| |    
T  28300304 cttcttactacagaatctacatctttactctcaacatgtcaaaaccacctagacatattttccacaatatttatactataggtgttacgtcaactatctc 28300403  T
Q  108 tacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctcttgttggttct 207  Q
    |||||||||| |||||||||||||||| |||||| | | || ||||||||||| |||||||| |||||   |||||||||| ||||||| |||| |||      
T  28300404 tacaatgttgtcatttctaatcttatctcatctagtcttactacacatccaacacaacatcctcatctttgcaaacttactctattctcgtgttagtt-a 28300502  T
Q  208 tagctgccaatactttgttccataaaacatc 238  Q
     | |  |||||||| ||||||||||||||||    
T  28300503 aaccgcccaatactctgttccataaaacatc 28300533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 460 - 622
Target Start/End: Original strand, 33830819 - 33830981
Alignment:
Q  460 atatctaaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtc 559  Q
    |||| ||||||||||||||| ||||||| ||| |||||||||||  |||||| | ||||||||||||| |||| | || ||||||||||||||| ||||     
T  33830819 atatttaaactgtgtaacttatatgataagatatccaactttcatgtctaaggtagaactacttcgtcgtttgctaaaattacattacatatactatgtt 33830918  T
Q  560 ttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctcctacatccca 622  Q
    |||||||||||||  | |||||| |||  |||||||||||| ||||| |||||| ||||||||    
T  33830919 ttgcttctactcagccgaaagtcatacacttctaagacttgtctccaagtctccgacatccca 33830981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 449 - 582
Target Start/End: Complemental strand, 38667264 - 38667130
Alignment:
Q  449 atgaacccaggatatctaaa-ctgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattac 547  Q
    ||||||||| ||||| |||| || |||||||| ||||||||||||||||| ||||||||||| | | ||||||||||| |||||| | ||  ||||||||    
T  38667264 atgaacccaagatatttaaaactttgtaacttgtatgatatgatctccaagtttcacctctaggatagaactacttcgccttttgctaaaactacattac 38667165  T
Q  548 atataccatgtcttgcttctactcaaacaaaagtc 582  Q
    ||||||||||||||||||||||||| || ||||||    
T  38667164 atataccatgtcttgcttctactcagactaaagtc 38667130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 38667554 - 38667443
Alignment:
Q  98 caactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccacaaacttactttattctct 197  Q
    |||||||| ||||||||||| |||| |||||| |||| |||||| | | ||||||| |||||| |||||| ||||||||  || |||||||||||||||     
T  38667554 caactatctctacaatgttgtcattactaatcctatctcatctacttttaccacacgtccaacacaacattcccatctctgcacacttactttattctcg 38667455  T
Q  198 tgttggttctta 209  Q
    ||||||||||||    
T  38667454 tgttggttctta 38667443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 453 - 612
Target Start/End: Original strand, 36565820 - 36565982
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  |||||||||||||| |||    
T  36565820 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgttgaagttacatttcat 36565919  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||  | |||||||||||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  36565920 atactctatcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctc 36565982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 481 - 573
Target Start/End: Complemental strand, 36544824 - 36544732
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | | |||||||||| |||||||  ||||||||||||||||||    
T  36544824 tatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctaaagttacattccatatactctgtcttgcttctactcaa 36544732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 481 - 572
Target Start/End: Original strand, 41444914 - 41445005
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    |||||||||||||||| |||||||||||||||| ||| | ||||| |||||| | || ||||||| |||||||  | |||||||| ||||||    
T  41444914 tatgatatgatctccacctttcacctctaagttagaaatgcttcgccttttgctaaaattacattccatatactttatcttgcttttactca 41445005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 453 - 573
Target Start/End: Original strand, 12492421 - 12492544
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || ||||||   |||  | |||||||||||| |||    
T  12492421 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttatccttccgctgaagttacattccat 12492520  T
Q  550 ataccatgtcttgcttctactcaa 573  Q
    ||||   |||||||||||||||||    
T  12492521 atactccgtcttgcttctactcaa 12492544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 573
Target Start/End: Original strand, 18849725 - 18849817
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    ||||||||||||||||| ||| |||||||||    |||||||||  |||||||||| |||| ||| |||||||  ||||||| ||||||||||    
T  18849725 tatgatatgatctccaatttttacctctaaggcataactacttcaccttttgttgacgttatattccatatactttgtcttggttctactcaa 18849817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 29520639 - 29520583
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatct 175  Q
    ||||||||||| ||||||||||| | | ||||||||||||||||||||||| |||||    
T  29520639 catttctaatcctatcccatctagtcttaccacacatccaacgcaacatcctcatct 29520583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 30783335 - 30783463
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctta 209  Q
    ||||||| ||||||||||| ||||| ||||| | |  ||||| ||||||||||| |||| ||||||||| | ||||| | |||| || |||||||||||     
T  30783335 aatgttgtcatttctaatcctatcctatctagtcttgccacagatccaacgcaagatcctcatctccactacacttattctattatcgtgttggttcttc 30783434  T
Q  210 gctgccaatactttgttccataaaacatc 238  Q
     |  |||| ||||||||||||| ||||||    
T  30783435 acgcccaacactttgttccatacaacatc 30783463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 175
Target Start/End: Original strand, 33827988 - 33828116
Alignment:
Q  48 caaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatc 146  Q
    |||| ||||||| | | |||||||||||||||| ||| | || || ||||||||||||| ||| ||||||| |||||||| |||||||  ||||| | |     
T  33827988 caaatcacctaagcatgttttccacaatatttaatactatagttgttaccccaactatctctataatgttgtcatttctagtcttatcttatctagtttt 33828087  T
Q  147 accacacatccaacgcaacatccccatct 175  Q
    || | ||||||||| |||||||| |||||    
T  33828088 actagacatccaacacaacatcctcatct 33828116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 481 - 572
Target Start/End: Original strand, 15215880 - 15215971
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    ||||||||||||||||||||||||||| | | | || | |||||  |||||| |||||||||||| ||| |||   ||||||||||||||||    
T  15215880 tatgatatgatctccaactttcacctccatggtagacccacttctccttttgctgaagttacatttcatgtactccgtcttgcttctactca 15215971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 16252922 - 16252864
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    ||||||| |||||||||| ||||| |||||||| | |||||||||||||| ||||||||    
T  16252922 aatgttgtcatttctaattttatctcatctaatcttaccacacatccaacacaacatcc 16252864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 33828518 - 33828572
Alignment:
Q  182 acttactttattctcttgttggttcttagctgc-caatactttgttccataaaac 235  Q
    ||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||    
T  33828518 acttactttattctcgtgttggttcttaactgctcaacactttgttccataaaac 33828572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 449 - 572
Target Start/End: Original strand, 4033069 - 4033195
Alignment:
Q  449 atgaacccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacatt 545  Q
    ||||||||| ||||  ||||| |||||||||    ||||||||||||||||||||||| ||| ||| | || || || |  |||||| ||||||||||||    
T  4033069 atgaacccaagatacttaaaccgtgtaacttggggtatgatatgatctccaactttcatctccaaggtagaccttctactccttttgctgaagttacatt 4033168  T
Q  546 acatataccatgtcttgcttctactca 572  Q
     |||||||   |||||| |||||||||    
T  4033169 ccatatactccgtcttgtttctactca 4033195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 41444549 - 41444613
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccacaat-atttatacaaaaggtgctaccccaacta 103  Q
    ||||||||||||||||||||||||| ||||||| ||  ||| ||| | |||||||||||||||||    
T  41444549 tacatgtccaaaccacctaaacctagtttccaccatcttttctactataggtgctaccccaacta 41444613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 42854492 - 42854552
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    |||||||||||||||| ||| ||||||||| | ||| ||||||||| |||| |||||||||    
T  42854492 aaaacacatgaggctcttctccatttcaaccacccagcttgaatacgatgatttacatctg 42854552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 572
Target Start/End: Complemental strand, 13984258 - 13984211
Alignment:
Q  525 gtcttttgttgaagttacattacatataccatgtcttgcttctactca 572  Q
    |||||||| |||||||||||| |||||||  |||||||||||||||||    
T  13984258 gtcttttgctgaagttacattccatatactctgtcttgcttctactca 13984211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 32043601 - 32043522
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaaca 166  Q
    ||||| |||||||||| || ||  ||||||| ||||||||||  |||||| |||| | | ||||||||||||||||||||    
T  32043601 aggtgataccccaactctctctctaatgttgtcatttctaattctatcccgtctagtcttaccacacatccaacgcaaca 32043522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 13171879 - 13172009
Alignment:
Q  47 ccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatat 145  Q
    ||||||||||||| | |||||||||| || |||  ||| | ||||||| |||||||| || ||  ||| ||| ||||||||||| |||||| |||| | |    
T  13171879 ccaaaccacctaagcatattttccaccatcttttctactataggtgcttccccaactctctctctaatcttgtcatttctaatcctatcccgtctagtct 13171978  T
Q  146 caccacacatccaacgcaacatccccatctc 176  Q
     || |||||||||| ||||||| | ||||||    
T  13171979 tactacacatccaatgcaacattctcatctc 13172009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 36069630 - 36069572
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaacatcc 169  Q
    ||||||| | |||||||||||||||| |||| | | |||||||||||||| ||||||||    
T  36069630 aatgttgtcgtttctaatcttatcccgtctagtcttaccacacatccaacacaacatcc 36069572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 22 - 72
Target Start/End: Original strand, 41971983 - 41972033
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttccac 72  Q
    ||||||| || |||| | |||||||||||||||||||||| ||||||||||    
T  41971983 atctacacgtcttctctctacatgtccaaaccacctaaacttattttccac 41972033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 128
Target Start/End: Complemental strand, 9695690 - 9695601
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccatttctaat 128  Q
    |||||| ||||||||||||| || | ||||||| || |||  ||| | |||||||||||||| |||| ||| ||||||| ||||||||||    
T  9695690 tacatgcccaaaccacctaagccgagtttccaccatcttttctactataggtgctaccccaaatatctctataatgttgtcatttctaat 9695601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 87 - 164
Target Start/End: Original strand, 44681310 - 44681387
Alignment:
Q  87 aggtgctaccccaactatccctacaatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaa 164  Q
    |||||||||| ||||| || ||  ||||||| |||||||||||||||| | |||| | | ||||||||||||| ||||    
T  44681310 aggtgctaccacaactgtctctctaatgttgtcatttctaatcttatctcgtctagtcttaccacacatccaatgcaa 44681387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 481 - 509
Target Start/End: Complemental strand, 3285161 - 3285133
Alignment:
Q  481 tatgatatgatctccaactttcacctcta 509  Q
    |||||||||||||||||||||||||||||    
T  3285161 tatgatatgatctccaactttcacctcta 3285133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 429
Target Start/End: Original strand, 4033034 - 4033078
Alignment:
Q  385 ttacatctgattttatttctccattattttgtactatgaacccaa 429  Q
    |||||| || |||||||||||||| ||| ||||||||||||||||    
T  4033034 ttacatatgcttttatttctccatcattgtgtactatgaacccaa 4033078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 9905076 - 9905132
Alignment:
Q  12 ttactataatatctacatgttttctttatacatgtccaaaccacctaaacctatttt 68  Q
    |||||| || ||||||| || |||| | |||||||||||||||||||| ||||||||    
T  9905076 ttactacaacatctacaagtcttctctctacatgtccaaaccacctaagcctatttt 9905132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 36395154 - 36395310
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaa-cctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgcc 119  Q
    ||||||| || |||| | |||||| |||||||| ||||| ||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| || |    
T  36395154 atctacaggtcttctctctacatgcccaaaccatctaaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtc 36395253  T
Q  120 atttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||| |||||| |||||  |||| | | ||||| ||||||||||||||||| ||||||    
T  36395254 attcctaatcctatcctgtctagtcttaccactcatccaacgcaacatcctcatctc 36395310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 36544946 - 36544886
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||| | | ||||||||| | ||||||||||||| |||| |||||||||    
T  36544946 aaaacacctgaggctcttatccatttcaaccacccaacttgaatacgatgacttacatctg 36544886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 38668103 - 38668047
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccacaatatttatacaaaaggtgctacc 96  Q
    |||||| ||| |||||||||||||||||| | |||||||||||| | | ||||||||    
T  38668103 tacatgcccagaccacctaaacctatttttcccaatatttatactataagtgctacc 38668047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 3e-31; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 465 - 582
Target Start/End: Original strand, 43111610 - 43111727
Alignment:
Q  465 taaactgtgtaacttctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgct 564  Q
    |||| |||||||||| ||||||||||||||||||| ||||||||||| |  ||||||||| ||||||| |||| ||||||||||||||| ||||||| ||    
T  43111610 taaattgtgtaacttatatgatatgatctccaactgtcacctctaaggtacaactacttcttcttttgctgaaattacattacatatactatgtcttact 43111709  T
Q  565 tctactcaaacaaaagtc 582  Q
    |||||||| |||||||||    
T  43111710 tctactcagacaaaagtc 43111727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 453 - 612
Target Start/End: Complemental strand, 52138531 - 52138369
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  52138531 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacattccat 52138432  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   |||||||||||||||||||| ||  | |||| ||||||| |||| |||||||||||    
T  52138431 atactccgtcttgcttctactcaaacagaatccatacgcttctaaggcttgcctccaggtctc 52138369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 449 - 570
Target Start/End: Complemental strand, 48221491 - 48221367
Alignment:
Q  449 atgaacccaggatatctaaactgtgtaacttct---atgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacatt 545  Q
    ||||| ||| ||||| |||| |||||||||| |   |||||||||||| ||||||||||||||||| | |||||||| |  |||||| |||| |||||||    
T  48221491 atgaatccaagatatttaaaatgtgtaacttgtggtatgatatgatcttcaactttcacctctaagatagaactactacaccttttgctgaaattacatt 48221392  T
Q  546 acatataccatgtcttgcttctact 570  Q
    |||||||| ||||||| ||||||||    
T  48221391 acatatactatgtcttacttctact 48221367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 453 - 570
Target Start/End: Complemental strand, 25191082 - 25190962
Alignment:
Q  453 acccaggatatctaaactgtgtaactt---ctatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||   |||||||||||||||||||||||||||| ||| | || | |||||  |||||| |||||||||||| |||    
T  25191082 acccaagatatttaaaccgtgtaacttgggctatgatatgatctccaactttcacctccaaggtagacccacttctccttttgctgaagttacattccat 25190983  T
Q  550 ataccatgtcttgcttctact 570  Q
    ||||   ||||||||||||||    
T  25190982 atactccgtcttgcttctact 25190962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 570
Target Start/End: Complemental strand, 19736838 - 19736749
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctact 570  Q
    ||||||||||||||||||||||||||| ||| | | ||||||  | |||||| |||||||||||| |||||||  |||||||||||||||    
T  19736838 tatgatatgatctccaactttcacctccaaggtaggactactctgccttttgctgaagttacattccatatactctgtcttgcttctact 19736749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 481 - 570
Target Start/End: Complemental strand, 19757740 - 19757651
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctact 570  Q
    ||||||||||||||||||||||||||| ||| | | ||||||| | |||||| | |||||||||| |||||||  |||||||||||||||    
T  19757740 tatgatatgatctccaactttcacctccaaggtaggactactttgccttttgctaaagttacattccatatactctgtcttgcttctact 19757651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 453 - 612
Target Start/End: Original strand, 51448288 - 51448450
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| | || |||||||  |||  | |||||||||||| |||    
T  51448288 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaaggtagacctacttctccttccgctgaagttacatttcat 51448387  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    ||||   ||||||||||||||||| |  ||  | |||| |||||||||||| ||| |||||||    
T  51448388 atactccgtcttgcttctactcaagcggaatccatacgcttctaagacttgcctctaggtctc 51448450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 481 - 568
Target Start/End: Complemental strand, 29817177 - 29817090
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttcta 568  Q
    ||||||||||||||||||||||||||| ||| | |||| |||||  |||||| |||||||||||| |||||||  ||||||| |||||    
T  29817177 tatgatatgatctccaactttcacctccaagatagaacaacttcaccttttgatgaagttacattccatatactctgtcttgattcta 29817090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 40 - 209
Target Start/End: Complemental strand, 26490374 - 26490205
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||||||||||||||||| ||||||||| || || |||  ||| | |||||||||| ||||| |  |||  |||  | |||| |||||| |||||| |    
T  26490374 tacatgtccaaaccacctaagcctattttctaccatcttttctactataggtgctacctcaactctgtcta--atgacgtcattgctaatcatatcccgt 26490277  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctccacaa-acttactttattctcttgttggttctta 209  Q
    ||  | | ||||| ||||||||||||||||| ||||||| | | |||||||| |||||||||||||||||||    
T  26490276 cttgtcttaccactcatccaacgcaacatcctcatctccgctacacttacttgattctcttgttggttctta 26490205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 453 - 612
Target Start/End: Original strand, 47542290 - 47542452
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||| ||||||||||||||||||||| ||| | || |||||||  ||| || |||||||||||| |||    
T  47542290 acccaagatatttaaaccgtgtaacttggggtatgaaatgatctccaactttcacctccaaggtagacctacttctccttctgctgaagttacattccat 47542389  T
Q  550 ataccatgtcttgcttctactcaaacaaaagtcttacggttctaagacttgactccaggtctc 612  Q
    | ||   ||||||||||||||||| |  ||  | |||| ||||||| |||| |||||||||||    
T  47542390 acactccgtcttgcttctactcaagcggaatccatacgcttctaaggcttgcctccaggtctc 47542452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 348
Target Start/End: Original strand, 43111395 - 43111586
Alignment:
Q  154 atccaacgcaacatccccatctccacaaacttactttattctcttgttggttcttag-ctgccaatactttgttccataaaacatctttgtactggcaac 252  Q
    ||||||||| ||||| ||||| || || ||||||||||||||| ||||||||| ||  | | ||| ||| |||||||||| |||||  ||  ||| ||||    
T  43111395 atccaacgcgacatctccatccccgcacacttactttattctcgtgttggttcataatcggtcaacactctgttccataacacatcactggtctgacaac 43111494  T
Q  253 tgtctggtannnnnnnncatttcaacttaaacggtacgtttgtataacaaaaaacacatgaggctcatctacatttcaacaatccaacttgaatac 348  Q
    |||||| ||        || ||||||||||||| || |||||||| ||| |||||||||||||||| ||| |||||||  ||| ||||||||||||    
T  43111495 tgtctgatatttttt--cacttcaacttaaacgatatgtttgtatcacataaaacacatgaggctcttctccatttca--aattcaacttgaatac 43111586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 553
Target Start/End: Complemental strand, 38849766 - 38849694
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatatac 553  Q
    ||||||||||||||||||||||||||| ||| | || |||||||  |||||| || ||||||||| |||||||    
T  38849766 tatgatatgatctccaactttcacctccaaggtagacctacttctccttttgatgtagttacattccatatac 38849694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 155
Target Start/End: Original strand, 39600886 - 39601020
Alignment:
Q  22 atctacatgttttctttatacatgtccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgcca 120  Q
    ||||||| || |||| | |||||| | ||||||||||| | | |||||||| || |||  ||| | |||| ||||||||||| || ||  ||||||| ||    
T  39600886 atctacaggtcttctctttacatgccaaaaccacctaagcttgttttccaccatcttttctactataggtactaccccaactctctctctaatgttgtca 39600985  T
Q  121 tttctaatcttatcccatctaatatcaccacacat 155  Q
    ||||||||||||||||||||| | | |||||||||    
T  39600986 tttctaatcttatcccatctagtcttaccacacat 39601020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 40 - 176
Target Start/End: Original strand, 42510237 - 42510371
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccacaat-atttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||||||||||||||||| |||||||||||| ||  ||| ||| | |||||||| ||||||  ||||||  || |  | |||||||| | ||||||||    
T  42510237 tacatgtccaaaccacctaagcctattttccactatcttttctactataggtgctatcccaac--tccctagtat-tatcaatttctaaacctatcccat 42510333  T
Q  139 ctaatatcaccacacatccaacgcaacatccccatctc 176  Q
    ||| | | ||||||||||||| ||||||||| ||||||    
T  42510334 ctagtcttaccacacatccaatgcaacatcctcatctc 42510371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 493 - 570
Target Start/End: Complemental strand, 19757644 - 19757567
Alignment:
Q  493 tccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctact 570  Q
    ||||||||||||||| ||| | | ||||||| | |||||| | |||||||||| |||||||  |||||||||||||||    
T  19757644 tccaactttcacctccaaggtaggactactttgccttttgctaaagttacattccatatactctgtcttgcttctact 19757567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 166
Target Start/End: Original strand, 36820184 - 36820309
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccacaatattta-tacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||||| ||||||||||| |||| ||||||| || |||  ||  | |||||||||||||||| || |||  |||| | ||||||||||| |||| | |    
T  36820184 tacatgtctaaaccacctaagcctagtttccaccatctttgctaatataggtgctaccccaactctctcta--atgtcgtcatttctaatcctatctcgt 36820281  T
Q  139 ctaatatcaccacacatccaacgcaaca 166  Q
    ||| | | ||||||||||||||||||||    
T  36820282 ctagtcttaccacacatccaacgcaaca 36820309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 453 - 572
Target Start/End: Complemental strand, 9258582 - 9258464
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacat 549  Q
    ||||| ||||| ||||| |||||||||    ||||||||||| || ||  ||||||||||||    | |||||||  ||||||||||||||||||| |||    
T  9258582 acccaagatatttaaaccgtgtaacttgggatatgatatgatatctaatgttcacctctaag----acctacttctccttttgttgaagttacattccat 9258487  T
Q  550 ataccatgtcttgcttctactca 572  Q
    ||||   ||||||||||||||||    
T  9258486 atactccgtcttgcttctactca 9258464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 481 - 511
Target Start/End: Original strand, 1470707 - 1470737
Alignment:
Q  481 tatgatatgatctccaactttcacctctaag 511  Q
    |||||||||||||||||||||||||||||||    
T  1470707 tatgatatgatctccaactttcacctctaag 1470737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 29919283 - 29919193
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctt 208  Q
    ||||||||||| |||| | ||||||   |||||||||||||| |||||||  ||||||||| | ||| | ||||||||| |||||||||||    
T  29919283 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctccactacactgattttattctcgtgttggttctt 29919193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 119 - 208
Target Start/End: Complemental strand, 29968436 - 29968346
Alignment:
Q  119 catttctaatcttatcccatctaatatcaccacacatccaacgcaacatccccatctccac-aaacttactttattctcttgttggttctt 208  Q
    ||||||||||| |||| | ||||||   |||||||||||||| |||||||  ||||||||| | ||| | ||||||||| |||||||||||    
T  29968436 catttctaatcatatctcgtctaatcgtaccacacatccaacacaacatcgtcatctccactacactgattttattctcgtgttggttctt 29968346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 273 - 353
Target Start/End: Complemental strand, 27917396 - 27917316
Alignment:
Q  273 ttcaacttaaacggtacgtttgtataacaaaaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatga 353  Q
    ||||||||||  ||||| ||| ||| ||| |||||||||||||||| |||  |||||| | | ||||||||||||| ||||    
T  27917396 ttcaacttaagtggtacttttttatcacataaaacacatgaggctcttctctatttcagctacccaacttgaatacgatga 27917316  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 459 - 506
Target Start/End: Original strand, 30724385 - 30724435
Alignment:
Q  459 gatatctaaactgtgtaacttcta---tgatatgatctccaactttcacct 506  Q
    ||||||||||||||||||||| ||   |||||||||||||||| |||||||    
T  30724385 gatatctaaactgtgtaacttatagtatgatatgatctccaacgttcacct 30724435  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 38849888 - 38849828
Alignment:
Q  303 aaaacacatgaggctcatctacatttcaacaatccaacttgaatacaatgaattacatctg 363  Q
    ||||||| |||||||| ||| ||||||||| | ||| |||||||||||||  |||||||||    
T  38849888 aaaacacctgaggctcttctccatttcaaccacccagcttgaatacaatggcttacatctg 38849828  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 45289282 - 45289346
Alignment:
Q  8 cttcttactataatatctacatgttttctttatacatgtccaaaccacctaaacctattttccac 72  Q
    |||||||||| || ||||||| || |||| | ||| || ||||||||||||| ||||||||||||    
T  45289282 cttcttactacaaaatctacaagtgttctctctacgtgcccaaaccacctaagcctattttccac 45289346  T

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Target: scaffold0018 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 481 - 573
Target Start/End: Complemental strand, 31140 - 31048
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttctactcaa 573  Q
    |||||||||||||||||||||||| || ||| | || |||||||  |||  | |||||||||||| |||||||   |||||||||||||||||    
T  31140 tatgatatgatctccaactttcacttccaaggtagacctacttctccttccgctgaagttacattccatatactcagtcttgcttctactcaa 31048  T

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Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 31527 - 31397
Alignment:
Q  40 tacatgtccaaaccacctaaacctattttccac-aatatttatacaaaaggtgctaccccaactatccctacaatgttgccatttctaatcttatcccat 138  Q
    |||||| |||||||| |||| ||||||||| || ||  ||| ||| | |||||||||||| ||| || ||  |||| || |||| ||||||||||||  |    
T  31527 tacatgcccaaaccatctaagcctattttctaccaacttttctactataggtgctacccccactctctctctaatggtgtcattcctaatcttatcctgt 31428  T
Q  139 ctaatatcaccacacatccaacgcaacatcc 169  Q
    ||| | | ||||| |||||||||||||||||    
T  31427 ctagtcttaccactcatccaacgcaacatcc 31397  T

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Target: scaffold0113 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 481 - 545
Target Start/End: Original strand, 12208 - 12272
Alignment:
Q  481 tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgttgaagttacatt 545  Q
    ||||||||||||||||||||||||| | ||| | || |||||||  |||||| ||||||||||||    
T  12208 tatgatatgatctccaactttcaccgcgaaggtagacctacttctccttttgctgaagttacatt 12272  T

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Target: scaffold0220 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 568
Target Start/End: Original strand, 24865 - 24918
Alignment:
Q  515 gaactacttcgtcttttgttgaagttacattacatataccatgtcttgcttcta 568  Q
    |||||||||||||||||  | |||||||||| |||||||  |||||||||||||    
T  24865 gaactacttcgtcttttactaaagttacatttcatatactctgtcttgcttcta 24918  T

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Target: scaffold0171 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 533
Target Start/End: Complemental strand, 5895 - 5812
Alignment:
Q  453 acccaggatatctaaactgtgtaacttc---tatgatatgatctccaactttcacctctaagtttgaactacttcgtcttttgt 533  Q
    ||||| ||||| ||||| |||||||||    ||||||||||||||||||||||||||| ||| |  |||||||||  |||||||    
T  5895 acccaagatatttaaaccgtgtaacttggggtatgatatgatctccaactttcacctccaagatataactacttctccttttgt 5812  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 164
Target Start/End: Original strand, 347255 - 347308
Alignment:
Q  111 aatgttgccatttctaatcttatcccatctaatatcaccacacatccaacgcaa 164  Q
    ||||||| ||||| | ||| ||||||||||| | ||||||||||||||||||||    
T  347255 aatgttgtcatttattatcctatcccatctactctcaccacacatccaacgcaa 347308  T

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