View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5020-Insertion-13 (Length: 512)
Name: NF5020-Insertion-13
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 272
Target Start/End: Original strand, 1971461 - 1971725
Alignment:
| Q |
8 |
gttttgtctccgctgcaaccgtctctgatcgacgccgtattcaatgtcgcccctagcataatcggctccagaatcatttaaattccggcgattctcaaag |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1971461 |
gttttgtctccgctgcaaccgtctctgatcgacgccgtattcaatgtcgcccccagcataatcggctccggaatcatttaaattccggcgattctcaaag |
1971560 |
T |
|
| Q |
108 |
ttctcggcgttcttccttctttcgccttgattctaatcgtcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaac |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1971561 |
ttctcggcgtgcttccttctttcgccttgattcttatcatcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacgcatgccggtgtaac |
1971660 |
T |
|
| Q |
208 |
cacacgtactttggtgttatgaaggaagcttttgggtctgttggagatttgtttatcgcggtgag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1971661 |
cacacgtactttggtgttatgaaggaagcttttgggtctgttggagctttgtttatcgcggtgag |
1971725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 306 - 509
Target Start/End: Original strand, 1971752 - 1971954
Alignment:
| Q |
306 |
gaaagaggtaataactcttagttcttgttt-atatttaatcnnnnnnnnnngtaatgaagctactacaacacaacatacacaaccagttgattaagaaag |
404 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1971752 |
gaaagaggtaataactcttagttcttattttatatttaatctttttttt--gtaatcaagctactacaacacaacatacacaaccagttgattaagaaag |
1971849 |
T |
|
| Q |
405 |
tggttcaagcaaattaggggcatttgattgctagggcttttttaaaaaattgtatgggtgaatgagattcattcaagtctgttttgacattgtttcaatg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1971850 |
tggttcaagcaaattaggggcatttgattgctagggcttttttaaaaaattgtatgggtgaatgagattcattcaagtctgttttgaggttgtttcaata |
1971949 |
T |
|
| Q |
505 |
tttga |
509 |
Q |
| |
|
||||| |
|
|
| T |
1971950 |
tttga |
1971954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 4e-67; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 41 - 253
Target Start/End: Original strand, 32394862 - 32395075
Alignment:
| Q |
41 |
gccgtattcaatgtcgcccctagcataatcggctccagaatcatttaaattccggcgattctcaaagttctcggcgttcttccttctttcgccttgattc |
140 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||| ||||||| | ||||||||||||||||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
32394862 |
gccgtattcaatgtcgccaccagcataattggctccggaatcatgtcaattccggcgattctcaaagttctcggtgtgcttccttccttcgccttgattc |
32394961 |
T |
|
| Q |
141 |
taatcgtcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccac-acgtactttggtgttatgaaggaagcttt |
239 |
Q |
| |
|
| || || | |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| ||||||||||||||||||||| |
|
|
| T |
32394962 |
ttattgttgccgtgctcgccgaagtttctgttgattttctcatgcgttttacacatgctggtgtaaccacgacatactctggtgttatgaaggaagcttt |
32395061 |
T |
|
| Q |
240 |
tgggtctgttggag |
253 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
32395062 |
tgggtccgttggag |
32395075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 131 - 253
Target Start/End: Original strand, 32392893 - 32393016
Alignment:
| Q |
131 |
gccttgattctaatcgtcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgtaaccac-acgtactttggtgttatga |
229 |
Q |
| |
|
||||| ||||||||||| | |||||| ||||||||||| || ||||||||||||||||||||| | || ||||||| || ||||| | |||| |||| |
|
|
| T |
32392893 |
gccttaattctaatcgtggctgtgcttgctgaagtttcagtggattttctcatgcgttttacagaagcaggtgtaaagacaacgtatgctagtgtgatga |
32392992 |
T |
|
| Q |
230 |
aggaagcttttgggtctgttggag |
253 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
32392993 |
gggaagcttttggatctgttggag |
32393016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 6e-66; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 106 - 272
Target Start/End: Original strand, 19962540 - 19962707
Alignment:
| Q |
106 |
agttctcggcgttcttccttctttcgccttgattctaatcgtcgatgtgctcgctgaagtttctgttgattttctcatgcgttttacacatgccggtgta |
205 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19962540 |
agttctcggcgtgcttccttctttcgccttgattcttatcgtcgatgtactcgctgaagtttttgttgattttctcatgcgttttacacatgcccgtgta |
19962639 |
T |
|
| Q |
206 |
accac-acgtactttggtgttatgaaggaagcttttgggtctgttggagatttgtttatcgcggtgag |
272 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
19962640 |
accacgacgtactttggtgttatgaaggaagcttttgagtctgttggagctttgtttatcacggtgag |
19962707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 382 - 510
Target Start/End: Original strand, 19962803 - 19962931
Alignment:
| Q |
382 |
acacaaccagttgattaagaaagtggttcaagcaaattaggggcatttgattgctagggcttttttaaaaaattgtatgggtgaatgagattcattcaag |
481 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
19962803 |
acacaactagttgattaagaacatggttcaagcaaattaggggaatttgattgctagggctttttcaaaaaattgtatgggtgcatgagattcattcaag |
19962902 |
T |
|
| Q |
482 |
tctgttttgacattgtttcaatgtttgac |
510 |
Q |
| |
|
||||| ||||| ||||||||| |||||| |
|
|
| T |
19962903 |
tctgtgttgacgctgtttcaatatttgac |
19962931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 19962734 - 19962772
Alignment:
| Q |
307 |
aaagaggtaataactcttagttcttgtttatatttaatc |
345 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
19962734 |
aaagaggtaataagtcttagttcttatttatatttaatc |
19962772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 44
Target Start/End: Original strand, 19962473 - 19962509
Alignment:
| Q |
8 |
gttttgtctccgctgcaaccgtctctgatcgacgccg |
44 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19962473 |
gttttgtctctactgcaaccgtctctgatcgacgccg |
19962509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University