View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-14 (Length: 511)
Name: NF5020-Insertion-14
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-14 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 11 - 511
Target Start/End: Complemental strand, 34780195 - 34779692
Alignment:
| Q |
11 |
cataacgctttcttaacttgataagagtgtggtgaagaagtgggttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtgg |
110 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780195 |
cataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaaggtgaagatgacctatgaatggaagacgtggtttagggcttggtgg |
34780096 |
T |
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| Q |
111 |
atttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgtataaacagagcaatcaccaataaagcaattgcaatttccaccaac |
210 |
Q |
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| T |
34780095 |
atttggaaggtggcgaagagcctttgattttgcagtaggtgttggacgcaagtgtaagaagagagcaatgagcaatagagtaactgcaagttccaccaac |
34779996 |
T |
|
| Q |
211 |
atggtgtatagcttctttgcagtatatttacttaagttgttaagtatgctaagaagtagaaagaaagttcttattagttacttttaggtgttgagaacaa |
310 |
Q |
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| T |
34779995 |
atggtgtatagcttctttgtagtatatttacttaagttgttaagtatactaagaagtagaaagaaagttcttattagttactcttaggtgttgagaacaa |
34779896 |
T |
|
| Q |
311 |
ataggatttatgttttgccctgagagaaaaggtttcccacatttcccttttataagccccacggttggtcctacaagtaaaagggtacttgttggtatca |
410 |
Q |
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| T |
34779895 |
ataggatttatgttttgccctgagagaaaaggtttcccacatttcccttttataagccccacggttggtcctacaagtaaaagggtacttgttggtatca |
34779796 |
T |
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| Q |
411 |
aaatattcttcaatgttgtattgtacacataagcaatcaaaataaaatatggcggcttatac---tactgcatcagtgtacccatcccctaccactagtt |
507 |
Q |
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| T |
34779795 |
aaatattcttcaatgttgtattgtacacataagcaatcaaaataaaatatggcggcttatactactactgcatcagtgtaccgatcccctaccactagtt |
34779696 |
T |
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| Q |
508 |
ttgt |
511 |
Q |
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|||| |
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| T |
34779695 |
ttgt |
34779692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 365
Target Start/End: Original strand, 34763917 - 34764265
Alignment:
| Q |
11 |
cataacgctttcttaacttgataagagtgtggtgaagaagtgggttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtgg |
110 |
Q |
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| T |
34763917 |
cataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaagatgaagatgaccaatgaaaggaagacgtggtttagggcttggtgg |
34764016 |
T |
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| Q |
111 |
atttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgtataaacagagcaatcaccaataaagcaattgcaatttccaccaac |
210 |
Q |
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| T |
34764017 |
atttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgtataaaaagagcaatcaccaataaagcaattgcaatttccaccaac |
34764116 |
T |
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| Q |
211 |
atggtgtatagcttctttgcagtatatttacttaagttgttaagtatgctaagaagtagaaagaaagttcttattagttacttt----taggtgttgaga |
306 |
Q |
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| T |
34764117 |
atggtgta--------ttgta-tatatttgcttaagttgttaaggatactaagaa-tagaaacaatgttattattggttactcttaggtaggtgttgaga |
34764206 |
T |
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| Q |
307 |
acaaataggatttatgttttgccctgagagaaaaggtttcccacatttcccttttataa |
365 |
Q |
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| T |
34764207 |
acaaataggtttgatgttttgccctgagagaaaaggtttccaacactccccttttataa |
34764265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 11 - 368
Target Start/End: Original strand, 34755941 - 34756281
Alignment:
| Q |
11 |
cataacgctttcttaacttgataagagtgtggtgaagaagtgggttatccaaaagatgaagatgacctatgaatggaagacgtggtttagggcttggtgg |
110 |
Q |
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||||||| | || ||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||| ||||| || || || || |
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| T |
34755941 |
cataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaaggtgaagatgaccaatggatggaagacgaggtttgggactcggagg |
34756040 |
T |
|
| Q |
111 |
atttggaagatggcgaagtgcctttgattttgcagtaggtgttggacgtaagtgtataaacagagcaatcaccaataaagcaattgcaatttccaccaac |
210 |
Q |
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| T |
34756041 |
attgggaaggtggcgaagagcctttgattttgcagtaggtgttggacgcaagtgtaagaagagagcaatgagcaatagagtaactgcaagttccaccaac |
34756140 |
T |
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| Q |
211 |
atggtgtatagcttctttgcagtatatttac-ttaagttgttaagtatgctaagaagtagaaagaaagttcttattagttacttttaggtgttgagaaca |
309 |
Q |
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| T |
34756141 |
atggtgta--------ttgtagtatatttactttaagttgttaagtataataagaagtagaaacaatgttctta----------ttaggtgttgagaaca |
34756222 |
T |
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| Q |
310 |
aataggatttatgttttgccctgagagaaaaggtttcccacatttcccttttataagcc |
368 |
Q |
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| T |
34756223 |
aataggatgtatgttttgctctgaagtaaaaggtttcccacatttcccttttataagcc |
34756281 |
T |
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