View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5020-Insertion-15 (Length: 448)
Name: NF5020-Insertion-15
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-15 |
 | |
|
| [»] chr8 (3 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 8 - 417
Target Start/End: Complemental strand, 1046484 - 1046079
Alignment:
| Q |
8 |
gggtgattgtatcaattgcggtagataatttaaaaaagaacaagagattaagaataacaaacaatatcatagaaagaatattggtcattttgcattgatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046484 |
gggtgattgtatcaattgcggtagataatttaaaaaagaacaagagattaagaataacaaacaatatcatagaaagaatattggtcattttgcattgatt |
1046385 |
T |
|
| Q |
108 |
gaatttgatgcagacacacgttatatgtttgtgcgtttatatatgctaaattgacttcccttnnnnnnnnnnnnnnncatgttaaattgacttgggacta |
207 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
1046384 |
gaatttgatgcagacacacgttggatgtttgtgtgtttagatatgctaaattgacatcccttaaaaaagaaaaaaaacatgttaaattgacttgggacta |
1046285 |
T |
|
| Q |
208 |
aactatgtgtttgtatgttattaattagtctttgacccgtgcaacgcaccgggcaaaagagttttattatggtcatgacaaagtttactctcaacatatc |
307 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1046284 |
aactatgtgtttgtatgttatta----gtctttgacccgtgcaatgcaccgggcaaaagagttttattatggtgatgacaaagtttactctcaacatatc |
1046189 |
T |
|
| Q |
308 |
aaaaaatacaacatatattatgcaattcatagataaataaaagggttaacgtgttattatggaggatagagaagctggtaattggagattaacgtgttat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1046188 |
aaaaaatacaacatatattatgcaattcatagataaataaaagggttaacgtgttattatggaggatagagaagctggtaattggagattaacgtgttat |
1046089 |
T |
|
| Q |
408 |
tatggctttg |
417 |
Q |
| |
|
|||||||||| |
|
|
| T |
1046088 |
tatggctttg |
1046079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 1071297 - 1071133
Alignment:
| Q |
8 |
gggtgattgtatcaattgcggtagataatttaaaaaagaacaa---gagattaagaataacaaacaatatcatagaaagaatattggtcattttgcattg |
104 |
Q |
| |
|
||||||| |||||||||| ||||||||||| ||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
1071297 |
gggtgatggtatcaattgaggtagataattgaaagaagaacaatatgagattaagaataacaaacaatatcataggaagaatattggccattttgcattg |
1071198 |
T |
|
| Q |
105 |
attgaatttgatgcagacacacgttatatgtttgtgcgtttatatatgctaaattgacttccctt |
169 |
Q |
| |
|
| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1071197 |
aatgaatttgatgcagacacacattgtatgtttgtgcgtttatatatgctaaattgactttcctt |
1071133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 1086961 - 1086797
Alignment:
| Q |
8 |
gggtgattgtatcaattgcggtagataatttaaaaaagaacaa---gagattaagaataacaaacaatatcatagaaagaatattggtcattttgcattg |
104 |
Q |
| |
|
||||||| |||||||||| |||||||||| ||| |||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1086961 |
gggtgatggtatcaattgaagtagataattgaaagaagaacaacaggagactaagaataacaaacaatatcataggaagaatattggtcattttgcattg |
1086862 |
T |
|
| Q |
105 |
attgaatttgatgcagacacacgttatatgtttgtgcgtttatatatgctaaattgacttccctt |
169 |
Q |
| |
|
||||| ||||| |||||||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1086861 |
attgagtttgaggcagacacacattttatgtttgtgcgtttatatatgctaaattgactttcctt |
1086797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 43321645 - 43321564
Alignment:
| Q |
367 |
tggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttggga |
448 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |
|
|
| T |
43321645 |
tggaggatagagaagctggtgactggagattaacttgttattatggctttcctgaacgtgcccgtcgtcgtgatgcttggga |
43321564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 372 - 445
Target Start/End: Original strand, 7123763 - 7123836
Alignment:
| Q |
372 |
gatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttg |
445 |
Q |
| |
|
|||| |||||||||| |||||||||| || ||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
7123763 |
gataaagaagctggtgattggagattgacttgttattatggctttcctgaacgtgctcgtcgtcgtgatgcttg |
7123836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 445
Target Start/End: Original strand, 24602247 - 24602321
Alignment:
| Q |
371 |
ggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttg |
445 |
Q |
| |
|
||||||||| ||| || ||||||||||||| | ||||||||||||| ||||||||| ||| ||| |||||||| |
|
|
| T |
24602247 |
ggatagagacgctcgtgattggagattaactttttattatggctttcctgaacgtgcctgtcatcgcgatgcttg |
24602321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 363 - 448
Target Start/End: Original strand, 27265173 - 27265258
Alignment:
| Q |
363 |
attatggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttggga |
448 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||| ||||||||||| |||| |||||||||||||| ||||||||||||||| |
|
|
| T |
27265173 |
attatggaggatagagaagctagtgattagagattaacttgttattatggttttgctgaacgtgcacgtcatcgtgatgcttggga |
27265258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 367 - 445
Target Start/End: Complemental strand, 51263098 - 51263020
Alignment:
| Q |
367 |
tggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttg |
445 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| ||||||||||||||| |||||||| |||||| |||||||||| |
|
|
| T |
51263098 |
tggaggataaagaagctggtgattggagattaacttgttattatggctttcttgaacgtgttcgtcgttgtgatgcttg |
51263020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 367 - 448
Target Start/End: Complemental strand, 48950542 - 48950461
Alignment:
| Q |
367 |
tggaggatagagaagctggtaattggagattaacgtgttattatggctttgatgaacgtgcacgtcgtcgtgatgcttggga |
448 |
Q |
| |
|
||||||||| |||||||||| ||||||||||||| | ||||||| ||||| ||||||||| ||| |||||||||||||||| |
|
|
| T |
48950542 |
tggaggataaagaagctggtgattggagattaacttattattatcgctttcctgaacgtgctcgtagtcgtgatgcttggga |
48950461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University