View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5020-Insertion-16 (Length: 300)

Name: NF5020-Insertion-16
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5020-Insertion-16
NF5020-Insertion-16
[»] chr4 (30 HSPs)
chr4 (5-93)||(23893408-23893496)
chr4 (187-299)||(34739283-34739395)
chr4 (187-299)||(45874058-45874170)
chr4 (187-299)||(55214655-55214767)
chr4 (181-299)||(19814102-19814220)
chr4 (187-288)||(2864772-2864873)
chr4 (187-299)||(1173954-1174066)
chr4 (199-299)||(12735446-12735546)
chr4 (199-299)||(43139919-43140019)
chr4 (180-299)||(53457820-53457939)
chr4 (199-299)||(23417496-23417596)
chr4 (187-299)||(23710346-23710458)
chr4 (187-299)||(26424871-26424982)
chr4 (247-299)||(52172003-52172055)
chr4 (187-299)||(54768445-54768557)
chr4 (262-299)||(23532125-23532162)
chr4 (182-299)||(28798401-28798518)
chr4 (257-290)||(31015055-31015088)
chr4 (259-299)||(39807919-39807959)
chr4 (259-290)||(1966625-1966656)
chr4 (261-299)||(1125964-1126002)
chr4 (258-288)||(12767161-12767191)
chr4 (261-299)||(48822890-48822928)
chr4 (258-299)||(51287675-51287717)
chr4 (258-299)||(37395698-37395739)
chr4 (259-299)||(238471-238511)
chr4 (199-299)||(12867856-12867956)
chr4 (184-288)||(22607985-22608089)
chr4 (262-290)||(37134126-37134154)
chr4 (262-290)||(44369937-44369965)
[»] chr2 (19 HSPs)
chr2 (187-299)||(23839862-23839974)
chr2 (187-299)||(29659231-29659343)
chr2 (182-299)||(34460367-34460484)
chr2 (187-299)||(10639619-10639731)
chr2 (187-299)||(11708681-11708793)
chr2 (187-299)||(33083567-33083679)
chr2 (187-299)||(26605627-26605739)
chr2 (187-299)||(45125178-45125290)
chr2 (187-290)||(19048757-19048860)
chr2 (181-295)||(16654360-16654474)
chr2 (187-299)||(19537310-19537422)
chr2 (187-288)||(11459718-11459819)
chr2 (187-296)||(40786225-40786334)
chr2 (187-299)||(34239833-34239945)
chr2 (199-299)||(37197623-37197723)
chr2 (257-290)||(12366801-12366834)
chr2 (259-299)||(4851395-4851435)
chr2 (188-299)||(11816563-11816675)
chr2 (259-299)||(42578243-42578283)
[»] chr8 (22 HSPs)
chr8 (187-299)||(35779510-35779622)
chr8 (182-299)||(1353-1470)
chr8 (187-299)||(70536-70648)
chr8 (187-299)||(1078661-1078773)
chr8 (187-299)||(6602531-6602643)
chr8 (187-299)||(6677984-6678096)
chr8 (187-299)||(32333117-32333229)
chr8 (187-299)||(42192652-42192764)
chr8 (182-299)||(28817254-28817371)
chr8 (200-299)||(3822412-3822511)
chr8 (217-299)||(31532138-31532220)
chr8 (187-299)||(9292021-9292133)
chr8 (187-290)||(4531004-4531107)
chr8 (210-299)||(5385364-5385453)
chr8 (187-299)||(10963255-10963365)
chr8 (202-299)||(42885192-42885289)
chr8 (187-299)||(45264653-45264764)
chr8 (257-290)||(41849253-41849286)
chr8 (262-291)||(42364723-42364752)
chr8 (259-299)||(7813397-7813437)
chr8 (250-290)||(13891156-13891196)
chr8 (187-243)||(29425360-29425416)
[»] chr7 (22 HSPs)
chr7 (187-299)||(40058241-40058353)
chr7 (187-299)||(44083943-44084055)
chr7 (181-299)||(31770545-31770663)
chr7 (182-299)||(8439076-8439193)
chr7 (187-299)||(4106741-4106853)
chr7 (187-290)||(25546297-25546400)
chr7 (187-290)||(47557784-47557887)
chr7 (197-299)||(4107322-4107424)
chr7 (187-290)||(13887174-13887275)
chr7 (187-299)||(47250264-47250376)
chr7 (187-290)||(10220494-10220597)
chr7 (182-299)||(23358183-23358300)
chr7 (257-290)||(46427433-46427466)
chr7 (258-290)||(5772841-5772873)
chr7 (187-299)||(15634892-15635004)
chr7 (259-299)||(34763517-34763557)
chr7 (199-290)||(29484777-29484868)
chr7 (261-299)||(11355900-11355938)
chr7 (190-243)||(7162857-7162910)
chr7 (262-299)||(48444165-48444202)
chr7 (259-299)||(38781221-38781261)
chr7 (200-299)||(43753766-43753866)
[»] chr6 (12 HSPs)
chr6 (182-290)||(33621492-33621600)
chr6 (187-299)||(33704219-33704331)
chr6 (187-299)||(24619092-24619204)
chr6 (187-290)||(361014-361117)
chr6 (187-290)||(28322935-28323038)
chr6 (220-299)||(29009663-29009742)
chr6 (200-290)||(4464143-4464233)
chr6 (259-299)||(21037365-21037405)
chr6 (187-243)||(35218697-35218753)
chr6 (259-287)||(2959224-2959252)
chr6 (190-274)||(33255495-33255578)
chr6 (259-299)||(35218653-35218693)
[»] chr3 (23 HSPs)
chr3 (187-299)||(4601428-4601540)
chr3 (187-299)||(52500841-52500953)
chr3 (181-299)||(7824467-7824585)
chr3 (181-299)||(29689495-29689613)
chr3 (181-299)||(55018047-55018165)
chr3 (187-299)||(43247663-43247775)
chr3 (187-299)||(54151694-54151806)
chr3 (187-299)||(54158269-54158381)
chr3 (199-282)||(28844519-28844602)
chr3 (181-296)||(33334605-33334720)
chr3 (199-299)||(448888-448988)
chr3 (199-296)||(35461495-35461592)
chr3 (199-288)||(36229018-36229107)
chr3 (187-240)||(41377587-41377640)
chr3 (199-299)||(3113008-3113108)
chr3 (188-242)||(10228960-10229015)
chr3 (257-299)||(475294-475335)
chr3 (182-244)||(45686095-45686157)
chr3 (262-299)||(27230744-27230781)
chr3 (259-299)||(9349689-9349729)
chr3 (247-299)||(28458725-28458777)
chr3 (257-289)||(38257326-38257358)
chr3 (259-291)||(40756748-40756780)
[»] chr1 (20 HSPs)
chr1 (187-299)||(41808205-41808317)
chr1 (182-299)||(48660020-48660137)
chr1 (187-299)||(28455877-28455989)
chr1 (187-299)||(32007077-32007189)
chr1 (187-290)||(7275684-7275787)
chr1 (182-299)||(41761424-41761541)
chr1 (187-299)||(5055801-5055913)
chr1 (257-299)||(3716684-3716726)
chr1 (250-299)||(13109836-13109885)
chr1 (247-299)||(13183189-13183241)
chr1 (183-295)||(16770173-16770285)
chr1 (187-299)||(35945800-35945912)
chr1 (199-299)||(39276365-39276465)
chr1 (187-289)||(192418-192520)
chr1 (250-300)||(778640-778690)
chr1 (178-290)||(26032792-26032907)
chr1 (258-288)||(26264560-26264590)
chr1 (259-299)||(7059542-7059582)
chr1 (259-299)||(41039316-41039356)
chr1 (259-299)||(45813024-45813064)
[»] scaffold1348 (1 HSPs)
scaffold1348 (187-299)||(875-987)
[»] chr5 (18 HSPs)
chr5 (187-299)||(21018226-21018338)
chr5 (187-288)||(4824963-4825064)
chr5 (187-299)||(6020995-6021107)
chr5 (187-299)||(13203960-13204072)
chr5 (187-299)||(35317710-35317822)
chr5 (187-288)||(9576985-9577086)
chr5 (187-243)||(32143471-32143527)
chr5 (188-242)||(26802337-26802392)
chr5 (188-242)||(26809887-26809942)
chr5 (188-242)||(26824914-26824969)
chr5 (257-286)||(17984768-17984797)
chr5 (257-290)||(19181784-19181817)
chr5 (250-299)||(23262610-23262659)
chr5 (187-299)||(27721434-27721546)
chr5 (259-299)||(29265950-29265990)
chr5 (259-299)||(31909398-31909438)
chr5 (259-299)||(32143427-32143467)
chr5 (182-286)||(35545931-35546035)
[»] scaffold0352 (1 HSPs)
scaffold0352 (199-299)||(8956-9056)
[»] scaffold0032 (1 HSPs)
scaffold0032 (187-299)||(56484-56596)
[»] scaffold0038 (1 HSPs)
scaffold0038 (187-290)||(114255-114358)
[»] scaffold0119 (2 HSPs)
scaffold0119 (187-299)||(13964-14076)
scaffold0119 (187-299)||(19644-19756)
[»] scaffold0053 (1 HSPs)
scaffold0053 (199-299)||(22178-22278)


Alignment Details
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 23893496 - 23893408
Alignment:
Q  5 acaaatatctatatctatgttgtgtggttttattgattgtaccttatgtgtgaatttacaccatcaatatatgcaaattaaaattacct 93  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  23893496 acaaatatctatatctatgttgtgtggttttattgattgtaccttatgtgtgaatttacaccgtcaatatatgcaaattaaaattacct 23893408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 34739283 - 34739395
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  34739283 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 34739382  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  34739383 cagtggattacca 34739395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 45874058 - 45874170
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||| | ||||||||||||| ||||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||    
T  45874058 tagaagtcctagctcaactgacaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 45874157  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  45874158 cagtggattacca 45874170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 55214655 - 55214767
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||||||||||||||| | ||||||||||||| ||||||| ||||  ||||||   || |||||  | ||||||||||||||| |||||||| |||    
T  55214655 tagaagtcttaactcaactgtcaaatgccaaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtatgagtttatttt 55214754  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  55214755 cagtggattacca 55214767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 299
Target Start/End: Original strand, 19814102 - 19814220
Alignment:
Q  181 attgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtt 280  Q
    ||||||||||||||||| |||||||||| |||||  |||||||||||||| ||||  |||||    ||  ||||| | |||||||| || ||||||||||    
T  19814102 attgtttagaagtcttagctcaactggcaaatgcagaaattgtaaggccggacgtcgtgacctgggttcaaacctgggacctcacaattatgtgtgagtt 19814201  T
Q  281 taatttcagtaaattacca 299  Q
    ||||||||||  |||||||    
T  19814202 taatttcagttgattacca 19814220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 2864873 - 2864772
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||||| |||||| |||||| ||||| | ||||  ||||||   || |||||| |||||||| ||||||||||||| |||||||    
T  2864873 tagaagtcctaactcaactggcaaatgcctaaattgcaaggcgggacgtcgtgacccgggttcgaacctagaacctcagagttgtgtgtgagcttaattt 2864774  T
Q  287 ca 288  Q
    ||    
T  2864773 ca 2864772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 1173954 - 1174066
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| ||||||    || |||||  | |||||||||||||||||||||||| |||    
T  1173954 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacctgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 1174053  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  1174054 cagtggattacca 1174066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 12735446 - 12735546
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||| | ||||||||||||||||||||  ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||||||  ||||||    
T  12735446 ctcaactgacaaatgccaaaattgtaaggccagacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgagtttattttcagtggattacc 12735545  T
Q  299 a 299  Q
    |    
T  12735546 a 12735546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 43140019 - 43139919
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||||||  ||||||    
T  43140019 ctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattacc 43139920  T
Q  299 a 299  Q
    |    
T  43139919 a 43139919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 53457820 - 53457939
Alignment:
Q  180 tattgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagt 279  Q
    |||||| |||||||| || |||||||||| |||||| |||||| |||| || |||| |||||||   || ||| |  | |||||||||||||||||||||    
T  53457820 tattgtctagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcatgacccgggttcgaatccgggacctcacagttgtgtgtgagt 53457919  T
Q  280 ttaatttcagtaaattacca 299  Q
    ||| |||||||  |||||||    
T  53457920 ttattttcagtggattacca 53457939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 23417596 - 23417496
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||||| ||||||||||||| ||||||| ||||| ||||||   || |||||  | || | ||||||||||||||||||| |||||||  ||||||    
T  23417596 ctcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggactttacagttgtgtgtgagtttattttcagtggattacc 23417497  T
Q  299 a 299  Q
    |    
T  23417496 a 23417496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 23710458 - 23710346
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||  |||| | |||||| ||||||| ||||  ||||||   || |||||| |||||||||||||  |||||||||||||||    
T  23710458 tagaagtcatagctcaactggtaaatgtcgaaattgcaaggccggacgtcgtgacccggattcgaacctggaacctcacagttacgtgtgagtttaattt 23710359  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  23710358 cagtggattacca 23710346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 26424982 - 26424871
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||| || ||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  26424982 tagaagtcctagctcaactggcaaatgccgaaattgcaaggcgga-cgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 26424884  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  26424883 cagtggattacca 26424871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 52172055 - 52172003
Alignment:
Q  247 tttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||| |||||||||| |||||||||||||||||||||||  |||||||    
T  52172055 tttgaacctagaacctcacaattgtgtgtgagtttaatttcagtggattacca 52172003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 54768557 - 54768445
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||| ||||||  |||    
T  54768557 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccaggacctcacagttgtgtgcgagtttttttt 54768458  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  54768457 cagtggattacca 54768445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 23532125 - 23532162
Alignment:
Q  262 tcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  23532125 tcacagttgtgtgtgagtttaatttcagtgaattacca 23532162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 28798518 - 28798401
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||| ||  ||||||||| |||||| |||||| ||||||| ||||  ||||||   || |||||  | |||| ||||||||||||||||||    
T  28798518 ttgtctagaagtcctagttcaactggcaaatgccgaaattgcaaggccggacgtcgtgacccgggttcgaacccgggaccttacagttgtgtgtgagttt 28798419  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  28798418 attttcagtggattacca 28798401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 31015055 - 31015088
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    ||||||||||||||||||||||||||||||||||    
T  31015055 gaacctcacagttgtgtgtgagtttaatttcagt 31015088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 39807919 - 39807959
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  39807919 acctcacagttgtgtgtgagtttaatttcagtggattacca 39807959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 290
Target Start/End: Original strand, 1966625 - 1966656
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagt 290  Q
    ||||||||||||||||||||||||||||||||    
T  1966625 acctcacagttgtgtgtgagtttaatttcagt 1966656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 1125964 - 1126002
Alignment:
Q  261 ctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||||||| |||||||||||||| ||||||||||    
T  1125964 ctcacagttgtgtatgagtttaatttcaataaattacca 1126002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Original strand, 12767161 - 12767191
Alignment:
Q  258 aacctcacagttgtgtgtgagtttaatttca 288  Q
    |||||||||||||||||||||||||||||||    
T  12767161 aacctcacagttgtgtgtgagtttaatttca 12767191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 48822890 - 48822928
Alignment:
Q  261 ctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||||||| || |||||||    
T  48822890 ctcacagttgtgtgtgagtttaatttcaatagattacca 48822928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 51287675 - 51287717
Alignment:
Q  258 aacctcacagttgtgtgtgag-tttaatttcagtaaattacca 299  Q
    ||||||||||||||||||||| |||||||||||| ||||||||    
T  51287675 aacctcacagttgtgtgtgagttttaatttcagtgaattacca 51287717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 37395698 - 37395739
Alignment:
Q  258 aacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||| |||||||||| | ||||||    
T  37395698 aacctcacagttgtgtgtgagtataatttcagtgacttacca 37395739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 238511 - 238471
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  238511 acctcacagttgtgtgtgagtttattttcagtggattacca 238471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 12867856 - 12867956
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||| | |||||| |||||| |||| || ||||  |||||| | || |||||| | | |||||||||||| ||||||||| |||||||  ||||||    
T  12867856 ctcaactgtcaaatgccgaaattgcaaggtcggacgtcgtgacccgagttcgaacctgggatctcacagttgtgagtgagtttattttcagtggattacc 12867955  T
Q  299 a 299  Q
    |    
T  12867956 a 12867956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 22607985 - 22608089
Alignment:
Q  184 gtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaa 283  Q
    ||||||||||| || |||||||| |  ||| | |||||| ||||||| ||||  ||||||   || |||||  | ||||||||||||||| |||||||||    
T  22607985 gtttagaagtcctagctcaactgacagatgtcgaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtctgagtttaa 22608084  T
Q  284 tttca 288  Q
    |||||    
T  22608085 tttca 22608089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 37134126 - 37134154
Alignment:
Q  262 tcacagttgtgtgtgagtttaatttcagt 290  Q
    |||||||||||||||||||||||||||||    
T  37134126 tcacagttgtgtgtgagtttaatttcagt 37134154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 44369965 - 44369937
Alignment:
Q  262 tcacagttgtgtgtgagtttaatttcagt 290  Q
    |||||||||||||||||||||||||||||    
T  44369965 tcacagttgtgtgtgagtttaatttcagt 44369937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 23839862 - 23839974
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||| ||||| |||||    || |||||| | |||||||||||||||||||||||| |||    
T  23839862 tagaagtcctaactcaactggcaaatgccaaaattgcaaggccggacgttgtgacctgggttcgaacctgggacctcacagttgtgtgtgagtttatttt 23839961  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  23839962 cagtggattacca 23839974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 29659343 - 29659231
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||||||||||||||||||||| || ||||||   || |||||    |||||||||||||||||||||||| |||    
T  29659343 tagaagtcctagctcaactggcaaatgccaaaattgtaaggccgaacattgtgacccgggttcgaacccatgacctcacagttgtgtgtgagtttatttt 29659244  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  29659243 cagtggattacca 29659231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 34460367 - 34460484
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||| || |||||||| | |||||| |||||| ||||||| ||||| ||||||   || |||||  |||||||||||||||||||||||||    
T  34460367 ttgtctagaagtcctagctcaactgacaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccagaacctcacagttgtgtgtgagttt 34460466  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  34460467 attttcagtggattacca 34460484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 10639731 - 10639619
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  10639731 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 10639632  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  10639631 cagtggattacca 10639619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 11708681 - 11708793
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||||||||||| ||||| ||||||   || |||||  | |||||||||||||||||| ||||| |||    
T  11708681 tagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgggtttatttt 11708780  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  11708781 cagtggattacca 11708793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 33083679 - 33083567
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  33083679 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 33083580  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  33083579 cagtggattacca 33083567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 26605627 - 26605739
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| ||||| ||||||   || |||||  | ||||||||||||||||||| |||| |||    
T  26605627 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgaatttatttt 26605726  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  26605727 cagtggattacca 26605739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 45125290 - 45125178
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||||||||||| ||||| ||||     || ||||   |||||||||||||||||||||||||| |||    
T  45125290 tagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgttgtgacttgggttcgaactcggaacctcacagttgtgtgtgagtttatttt 45125191  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  45125190 cagtggattacca 45125178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 19048757 - 19048860
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||||||||||| |||| |||| ||   || |||||  | |||||||| ||||||||||||||| |||    
T  19048757 tagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgtcatgatccgggttcgaacccgggacctcacaattgtgtgtgagtttagttt 19048856  T
Q  287 cagt 290  Q
    ||||    
T  19048857 cagt 19048860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 295
Target Start/End: Original strand, 16654360 - 16654474
Alignment:
Q  181 attgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtt 280  Q
    |||||||||||||| |||||||||||   |||||| |||||| ||||||| |||   ||| || | || |||||  ||||||||||||||||||||||||    
T  16654360 attgtttagaagtcctaactcaactgataaatgccgaaattgcaaggccggacgccgtgatccgagttcgaacccggaacctcacagttgtgtgtgagtt 16654459  T
Q  281 taatttcagtaaatt 295  Q
    || ||| ||| ||||    
T  16654460 tatttttagtgaatt 16654474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 19537310 - 19537422
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||  ||||||||| |||||| |||||| ||||||| ||||| ||| ||   || |||||  |||||||||||||||||||| ||||| |||    
T  19537310 tagaagtcctagttcaactggcaaatgccgaaattgcaaggccggacgttgtgatccgggttcgaacccggaacctcacagttgtgtgtgtgtttatttt 19537409  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  19537410 cagtggattacca 19537422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 11459718 - 11459819
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| |||| || |||| |||||||   || |||||  | |||||||||||||||||| ||||| |||    
T  11459718 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgtgtttatttt 11459817  T
Q  287 ca 288  Q
    ||    
T  11459818 ca 11459819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 296
Target Start/End: Complemental strand, 40786334 - 40786225
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||| | |||||| |||||| ||||||| ||||  ||||||   || ||||||   ||||| |||||| |||||||||||||||    
T  40786334 tagaagtcataactcaactgacaaatgccgaaattgcaaggccggacgtcgtgaccctggttcgaacctaagacctcgcagttgagtgtgagtttaattt 40786235  T
Q  287 cagtaaatta 296  Q
     ||| |||||    
T  40786234 tagtgaatta 40786225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 34239945 - 34239833
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| |||||| ||| || |||||| ||||||||||| |  ||||  |||| | | || ||||   |||||| |||||||||| ||||||||||||    
T  34239945 tagaagtcctaactctactagcaaatgccgaaattgtaaggtcagacgtcgtgactcgagttcgaactcagaaccttacagttgtgtatgagtttaattt 34239846  T
Q  287 cagtaaattacca 299  Q
    || ||||||||||    
T  34239845 caataaattacca 34239833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 37197723 - 37197623
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||||| |||||| |||||| ||||| | ||||  ||||||   || |||||  | |||||||||||||||||||||||| |||||||  ||||||    
T  37197723 ctcaactggcaaatgccgaaattgcaaggctggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggattacc 37197624  T
Q  299 a 299  Q
    |    
T  37197623 a 37197623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 12366801 - 12366834
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    |||||||||||||||||||||||||||| |||||    
T  12366801 gaacctcacagttgtgtgtgagtttaatatcagt 12366834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 4851395 - 4851435
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  4851395 acctcacagttgtgtgtgagtttaattttagtggattacca 4851435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 299
Target Start/End: Complemental strand, 11816675 - 11816563
Alignment:
Q  188 agaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgag-tttaattt 286  Q
    ||||||| || |||||||||| |||||| |||||| |||| || ||||  |||||    || |||||  ||||||||||||||| |||||| ||||||||    
T  11816675 agaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcgtgacctgggttcgaacccggaacctcacagttgtatgtgagttttaattt 11816576  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  11816575 cagtggattacca 11816563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 42578243 - 42578283
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  42578243 acctcacagttgtgtgtgagtttattttcagtggattacca 42578283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 35779622 - 35779510
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| ||||||||||||| ||||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||    
T  35779622 tagaagtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 35779523  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  35779522 cagtggattacca 35779510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 1470 - 1353
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||  || |||||||||| ||||||||||||| ||||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||    
T  1470 ttgtctagaagttctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgaccctggttcgaacccgggacctcacagttgtgtgtgagttt 1371  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  1370 attttcagtggattacca 1353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 70648 - 70536
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| |||| || |||| |||||||   ||||||||  | |||||||||||||||||||||||| |||    
T  70648 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgtcatgacccgggtttgaacccgggacctcacagttgtgtgtgagtttatttt 70549  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  70548 cagtggattacca 70536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 1078773 - 1078661
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||  |||||| |||||| ||||||| |||| ||||||||  || |||||  | |||||||||||||||||||||||| |||    
T  1078773 tagaagtcgtagctcaactggtaaatgccgaaattgcaaggccggacgtcatgacccaggttcgaacccgggacctcacagttgtgtgtgagtttatttt 1078674  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  1078673 cagtggattacca 1078661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 6602643 - 6602531
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  6602643 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 6602544  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  6602543 cagtggattacca 6602531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 6678096 - 6677984
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  6678096 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 6677997  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  6677996 cagtggattacca 6677984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 32333117 - 32333229
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||    
T  32333117 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 32333216  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  32333217 cagtggattacca 32333229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 42192764 - 42192652
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| ||||||| | || |||||  | | |||||||||||||||||||||| |||    
T  42192764 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgagttcgaacccgggatctcacagttgtgtgtgagtttatttt 42192665  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  42192664 cagtggattacca 42192652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 28817254 - 28817371
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||| || |||||||||| |||||| |||||| ||||||| ||||| ||||||   || |||||  | | |||||||||||||||||||||    
T  28817254 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggatctcacagttgtgtgtgagttt 28817353  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  28817354 attttcagtggattacca 28817371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 299
Target Start/End: Original strand, 3822412 - 3822511
Alignment:
Q  200 tcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||| |||||| ||||||||||| || ||||| ||||||   || |||||  | | |||||||||||||||||||||||||| ||| ||||||||    
T  3822412 tcaactggcaaatgccgaaattgtaaggtcggacgttgtgacccgggttcgaacccaggatctcacagttgtgtgtgagtttaattttagtgaattacca 3822511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 217 - 299
Target Start/End: Complemental strand, 31532220 - 31532138
Alignment:
Q  217 aaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||| ||||||| ||||| ||||||   ||||||||  | ||||||||||||||||||||||||||||||||  |||||||    
T  31532220 aaattgcaaggccggacgttgtgacccggatttgaaccggggacctcacagttgtgtgtgagtttaatttcagtggattacca 31532138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 9292021 - 9292133
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||| | ||||||||| |||| ||||| |||||| | || ||||   | || ||||||||||||||||||||| |||    
T  9292021 tagaagtcctagctcaactggcaaatgtcgaaattgtaaagccggacgttgtgacccgaattcgaactcgggacttcacagttgtgtgtgagtttatttt 9292120  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  9292121 cagtggattacca 9292133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 4531107 - 4531004
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || ||||| |||| |||||| |||||| ||||| | |||| |||||||   || |||||  | ||||||||| ||||||||||||||||||    
T  4531107 tagaagtcctagctcaattggcaaatgccgaaattgcaaggctggacgtcatgacccgggttcgaacccgggacctcacagctgtgtgtgagtttaattt 4531008  T
Q  287 cagt 290  Q
    ||||    
T  4531007 cagt 4531004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 210 - 299
Target Start/End: Original strand, 5385364 - 5385453
Alignment:
Q  210 aatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||| |||||| ||||| | ||||  |||||||  || |||||  | |||||||||||||||||||||||||||||||| | ||||||    
T  5385364 aatgccgaaattgcaaggctggacgtcgtgacccaggttcgaacccgggacctcacagttgtgtgtgagtttaatttcagtgatttacca 5385453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 10963365 - 10963255
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||  ||||||||||||| ||| |||  || |||||  | ||||||||||||  |||||||||| |||    
T  10963365 tagaagtcctagctcaactggcaaatgccgaaattacaaggccgaacgttgtgatccaggttcgaacccgggacctcacagttg--tgtgagtttatttt 10963268  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  10963267 cagtggattacca 10963255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 202 - 299
Target Start/End: Original strand, 42885192 - 42885289
Alignment:
Q  202 aactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | | |||||||||||||||||||||| |||||||  |||||||    
T  42885192 aactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattacca 42885289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 45264764 - 45264653
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||||| |||||| |||||| | || |||||||  |||| |   || |||||  | ||||||||||| ||||||||||||||||    
T  45264764 tagaagtcctaactcaactggcaaatgccgaaattgca-ggtcgaacgtcgtgactcgggttcgaacccgggacctcacagttttgtgtgagtttaattt 45264666  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  45264665 cagtggattacca 45264653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Complemental strand, 41849286 - 41849253
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    ||||||||| ||||||||||||||||||||||||    
T  41849286 gaacctcactgttgtgtgtgagtttaatttcagt 41849253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 291
Target Start/End: Complemental strand, 42364752 - 42364723
Alignment:
Q  262 tcacagttgtgtgtgagtttaatttcagta 291  Q
    ||||||||||||||||||||||||||||||    
T  42364752 tcacagttgtgtgtgagtttaatttcagta 42364723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 7813397 - 7813437
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  7813397 acctcacagttgtgtgtgagtttattttcagtggattacca 7813437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 290
Target Start/End: Original strand, 13891156 - 13891196
Alignment:
Q  250 gaaccttgaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    |||||| | |||||||||||||||||||||||| |||||||    
T  13891156 gaacctaggacctcacagttgtgtgtgagtttattttcagt 13891196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 29425360 - 29425416
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgaccc 243  Q
    |||||||| || ||||| |||| ||||||||||||| ||||||| |||| |||||||    
T  29425360 tagaagtcctagctcaattggcaaatgccaaaattgcaaggccggacgtcatgaccc 29425416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 40058241 - 40058353
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||||| ||||||||||||| ||||||| ||||| ||||||   || |||||  | ||||||||||||||| |||||||| |||    
T  40058241 tagaagtcctaactcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtatgagtttatttt 40058340  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  40058341 cagtggattacca 40058353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 44083943 - 44084055
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| ||||||||||||| ||||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||    
T  44083943 tagaagtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 44084042  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  44084043 cagtggattacca 44084055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 31770663 - 31770545
Alignment:
Q  181 attgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtt 280  Q
    ||||| |||||||| || |||||||||| |||||| |||||| ||||||| | || |||||||   || |||||  | ||||||||||||||||||||||    
T  31770663 attgtctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggatgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtt 31770564  T
Q  281 taatttcagtaaattacca 299  Q
    || |||||||  |||||||    
T  31770563 tattttcagtggattacca 31770545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 8439076 - 8439193
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    ||||||||||||| ||  ||||||||| ||||||||||||| |||| || ||||| ||||||   || |||||  | ||||||||||||||||||| |||    
T  8439076 ttgtttagaagtcctagttcaactggcaaatgccaaaattgcaaggtcggacgttgtgacccggattcgaacccaggacctcacagttgtgtgtgaattt 8439175  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  8439176 attttcagtggattacca 8439193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 4106741 - 4106853
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || | |||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  4106741 tagaagtcctagcccaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 4106840  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  4106841 cagtggattacca 4106853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 25546400 - 25546297
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||  |||||| |||||| ||||||| |||| |||||||   || ||| |  | ||||||||||||||||||||||||||||    
T  25546400 tagaagtcctagctcaactggtaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaatccgggacctcacagttgtgtgtgagtttaattt 25546301  T
Q  287 cagt 290  Q
    ||||    
T  25546300 cagt 25546297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 47557784 - 47557887
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||||  |||||| |||||  |||| || |||| |||||||   || |||||  ||||||||||||||| ||||||||||||||    
T  47557784 tagaagtcctaactcaactggtaaatgccgaaattacaaggtcgcacgtcatgacccgggttcgaacccggaacctcacagttgtatgtgagtttaattt 47557883  T
Q  287 cagt 290  Q
    ||||    
T  47557884 cagt 47557887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 197 - 299
Target Start/End: Original strand, 4107322 - 4107424
Alignment:
Q  197 aactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaatta 296  Q
    |||||||||||| |||||| |||||| ||||||| |||| | |||||   || |||||  | |||||||||||||||||||||||| |||||||  ||||    
T  4107322 aactcaactggcaaatgccgaaattgcaaggccggacgtcacgacccgggttcgaacccgggacctcacagttgtgtgtgagtttattttcagtggatta 4107421  T
Q  297 cca 299  Q
    |||    
T  4107422 cca 4107424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 13887174 - 13887275
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||||||||||||||||| |||||| || ||| ||| ||| ||||  |||||||  || |||||  ||||||||||||  ||| ||||||||||||    
T  13887174 tagaagtcttaactcaactggcaaatgccgaacttgcaagaccggacgtcgtgacccaggttcgaacccggaacctcacagt--tgtatgagtttaattt 13887271  T
Q  287 cagt 290  Q
    ||||    
T  13887272 cagt 13887275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 47250376 - 47250264
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||| | | |||  ||||||||||||||||| |||    
T  47250376 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacctgggatctcttagttgtgtgtgagtttatttt 47250277  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  47250276 cagtggattacca 47250264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 290
Target Start/End: Complemental strand, 10220597 - 10220494
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||||| || |||||||||||||||| | |||| |||| |    || ||| |   |||||||||||| ||||||||||||||||    
T  10220597 tagaagtcctaactcaactggcaaaagccaaaattgtaaggcaggacgtcatgatctgggttcgaatccgaaacctcacagttttgtgtgagtttaattt 10220498  T
Q  287 cagt 290  Q
    ||||    
T  10220497 cagt 10220494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 23358183 - 23358300
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||| || |||||||||| ||| || |||||| ||||||| ||||  | ||||   || |||||  | |||||||||||||||||||||||    
T  23358183 ttgtctagaagtcctagctcaactggcaaataccgaaattgcaaggccggacgtcgtaacccgggttcgaacccgggacctcacagttgtgtgtgagttt 23358282  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  23358283 attttcagtggattacca 23358300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 46427433 - 46427466
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    ||||||||||||||||||||||||||||||||||    
T  46427433 gaacctcacagttgtgtgtgagtttaatttcagt 46427466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 5772873 - 5772841
Alignment:
Q  258 aacctcacagttgtgtgtgagtttaatttcagt 290  Q
    |||||||||||||||||||||||||||||||||    
T  5772873 aacctcacagttgtgtgtgagtttaatttcagt 5772841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 15635004 - 15634892
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || ||||||| || |||||| ||||||||| | || ||||  ||||||   || ||| |  |||| ||||||||||||||||||||| |||    
T  15635004 tagaagtcatagctcaactagcaaatgccgaaattgtaaagtcggacgtcgtgacccggattcgaaaccggaacttcacagttgtgtgtgagtttatttt 15634905  T
Q  287 cagtaaattacca 299  Q
    ||||| |||||||    
T  15634904 cagtagattacca 15634892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 34763517 - 34763557
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||||||||||||||||||||||||||  |||||||    
T  34763517 acctcacagttgtgtgtgagtttaatttcagtggattacca 34763557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 29484868 - 29484777
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    |||||||||| |||||| |||||| ||||||| |||| |||| |    ||||||||  | |||||||| |||| ||||||||||||||||||    
T  29484868 ctcaactggcaaatgccgaaattgcaaggccggacgtcatgatctgggtttgaacccgggacctcacaattgtatgtgagtttaatttcagt 29484777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 299
Target Start/End: Original strand, 11355900 - 11355938
Alignment:
Q  261 ctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  11355900 ctcacagttgtgtgtgagtttaatttcagtggattacca 11355938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 7162910 - 7162857
Alignment:
Q  190 aagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgaccc 243  Q
    ||||| || |||||||||| |||||| |||||||||||||| ||||| ||||||    
T  7162910 aagtcctagctcaactggcaaatgccgaaattgtaaggccggacgttgtgaccc 7162857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Complemental strand, 48444202 - 48444165
Alignment:
Q  262 tcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  48444202 tcacagttgtgtgtaagtttaatttcagtgaattacca 48444165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 38781261 - 38781221
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  38781261 acctcacagttgtgtgtgagtttattttcagtggattacca 38781221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 43753866 - 43753766
Alignment:
Q  200 tcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgag-tttaatttcagtaaattacc 298  Q
    ||||||||| |||||| |||||| ||||||| ||||  |||||    || |||||  ||||||||||||||| |||||| ||||||||||||  ||||||    
T  43753866 tcaactggcaaatgccgaaattgcaaggccggacgtcgtgacctgggttcgaacccggaacctcacagttgtatgtgagttttaatttcagtggattacc 43753767  T
Q  299 a 299  Q
    |    
T  43753766 a 43753766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 290
Target Start/End: Original strand, 33621492 - 33621600
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||    
T  33621492 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagttt 33621591  T
Q  282 aatttcagt 290  Q
    |||||||||    
T  33621592 aatttcagt 33621600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 33704219 - 33704331
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  33704219 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 33704318  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  33704319 cagtggattacca 33704331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 24619204 - 24619092
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| ||||||||||| | |||| |||||||||||||||||||||  |||||| | || || ||    |||||| | |||||||||||||||||||    
T  24619204 tagaagtcctaactcaactgacaaatgtcaaaattgtaaggccgaacgtcgtgacccgagttcgatcccgtgacctcataattgtgtgtgagtttaattt 24619105  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  24619104 cagtcgattacca 24619092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 361014 - 361117
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    ||||||||||| |||| ||||| ||||||||||||| |||||||||| |  |||| |   || |||||  ||||||||||||| | ||||||||||||||    
T  361014 tagaagtcttagctcatctggcaaatgccaaaattgcaaggccgaacatcgtgacacgggttcgaacccggaacctcacagttatatgtgagtttaattt 361113  T
Q  287 cagt 290  Q
    ||||    
T  361114 cagt 361117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 28322935 - 28323038
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||||||||||| |||| |||| ||   || |||||  | |||||||| ||||||||||||||| |||    
T  28322935 tagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgtcatgatccgggttcgaacccgggacctcacaattgtgtgtgagtttagttt 28323034  T
Q  287 cagt 290  Q
    ||||    
T  28323035 cagt 28323038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 299
Target Start/End: Complemental strand, 29009742 - 29009663
Alignment:
Q  220 ttgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||||| |||| ||||||| | || |||||| | |||||||||||||||||||||||| ||| ||| ||||||||    
T  29009742 ttgtaaggccggacgtcatgacccgaattcgaacctgggacctcacagttgtgtgtgagtttatttttagtgaattacca 29009663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 4464143 - 4464233
Alignment:
Q  200 tcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    ||||||| | |||||| |||||| ||||||| |||| |||| ||   || |||||| | ||||||||||||||||||||||||||||||||    
T  4464143 tcaactgacaaatgccgaaattgcaaggccggacgtcatgatccgggttcgaacctgggacctcacagttgtgtgtgagtttaatttcagt 4464233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 21037365 - 21037405
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| ||||||| ||||||||    
T  21037365 acctcacagttgtgtgtgagtttattttcagtgaattacca 21037405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 35218753 - 35218697
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgaccc 243  Q
    |||||||| || |||||||||| ||||||||||||| ||||||| ||||| ||||||    
T  35218753 tagaagtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgaccc 35218697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 287
Target Start/End: Original strand, 2959224 - 2959252
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttc 287  Q
    |||||||||||||||||||||||||||||    
T  2959224 acctcacagttgtgtgtgagtttaatttc 2959252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 274
Target Start/End: Original strand, 33255495 - 33255578
Alignment:
Q  190 aagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtg 274  Q
    ||||| || |||| ||||| ||||||||||||||||||| | ||||| |||||  | || |||||| | ||||||||||||||||    
T  33255495 aagtcctagctcagctggcaaatgccaaaattgtaaggctggacgtt-tgacctgagttcgaacctgggacctcacagttgtgtg 33255578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 35218693 - 35218653
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  35218693 acctcacagttgtgtgtgagtttattttcagtggattacca 35218653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 4601428 - 4601540
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  |||||||||||||||||||||||||| |||    
T  4601428 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccggaacctcacagttgtgtgtgagtttatttt 4601527  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  4601528 cagtggattacca 4601540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 52500841 - 52500953
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||| | |||||||||||||| |||| |||| ||   || ||||||  ||||||||||||||||||||||||| |||    
T  52500841 tagaagtcctagctcaactggcaaatgtcgaaattgtaaggccggacgtcatgatccgggttcgaacctgaaacctcacagttgtgtgtgagtttatttt 52500940  T
Q  287 cagtaaattacca 299  Q
    ||||| |||||||    
T  52500941 cagtagattacca 52500953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 7824585 - 7824467
Alignment:
Q  181 attgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtt 280  Q
    ||||| |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | ||||||||||||||||||||||    
T  7824585 attgtctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtt 7824486  T
Q  281 taatttcagtaaattacca 299  Q
    || |||||||  |||||||    
T  7824485 tattttcagtggattacca 7824467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 29689613 - 29689495
Alignment:
Q  181 attgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtt 280  Q
    ||||| |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | ||||||||||||||||||||||    
T  29689613 attgtctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtt 29689514  T
Q  281 taatttcagtaaattacca 299  Q
    || |||||||  |||||||    
T  29689513 tattttcagtggattacca 29689495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 181 - 299
Target Start/End: Complemental strand, 55018165 - 55018047
Alignment:
Q  181 attgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtt 280  Q
    ||||| |||||||| ||||||||||||| |||| |||||||| ||||||| ||||  ||||||   || |||||  | ||||||||||||||||||||||    
T  55018165 attgtctagaagtcctaactcaactggcaaatgtcaaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtt 55018066  T
Q  281 taatttcagtaaattacca 299  Q
    || |||||||  |||||||    
T  55018065 tattttcagtggattacca 55018047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 43247775 - 43247663
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| ||||||||||||| ||||||| ||||| |||||    || |||||  | |||||||||||||||||||||||| |||    
T  43247775 tagaagtcctagctcaactggcaaatgccaaaattgcaaggccggacgttgtgacctgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 43247676  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  43247675 cagtggattacca 43247663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 54151806 - 54151694
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | ||||||||||||||| |||||||| |||    
T  54151806 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtatgagtttatttt 54151707  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  54151706 cagtggattacca 54151694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 54158269 - 54158381
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||| ||   || |||||  | |||||||||||||||||||||||| |||    
T  54158269 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgatccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 54158368  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  54158369 cagtggattacca 54158381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 282
Target Start/End: Original strand, 28844519 - 28844602
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttta 282  Q
    |||||||| | |||||| |||||| ||||||| ||||| ||||||   || |||||| ||||||||||||||||||||||||||    
T  28844519 ctcaactgacaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacctggaacctcacagttgtgtgtgagttta 28844602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 296
Target Start/End: Original strand, 33334605 - 33334720
Alignment:
Q  181 attgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtt 280  Q
    ||||| |||||||| || ||||||| || |||||| |||||| || |||| ||||| |||||  | || ||| |  | ||||||||||||||||||||||    
T  33334605 attgtctagaagtcctagctcaacttgcaaatgccgaaattgcaaagccggacgttgtgacctgagttcgaatccgggacctcacagttgtgtgtgagtt 33334704  T
Q  281 taatttcagtaaatta 296  Q
    ||||||||||| ||||    
T  33334705 taatttcagtagatta 33334720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 448988 - 448888
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||| | |||| |||||||||||||||| ||||  ||| || | || |||||| | ||||||||||||| |||||||||||||| |||  ||||||    
T  448988 ctcaactgacaaatgtcaaaattgtaaggccggacgtcgtgatccgaattcgaacctaggacctcacagttgtttgtgagtttaattttagtggattacc 448889  T
Q  299 a 299  Q
    |    
T  448888 a 448888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 296
Target Start/End: Complemental strand, 35461592 - 35461495
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaatta 296  Q
    |||||||||| |||||| |||||| |||| || ||||| ||| ||   || |||||  |||||||||||||||||||||||||| |||| ||| ||||    
T  35461592 ctcaactggcaaatgccgaaattgcaaggtcggacgttgtgatccgggttcgaacccggaacctcacagttgtgtgtgagtttattttctgtagatta 35461495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 288
Target Start/End: Complemental strand, 36229107 - 36229018
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttca 288  Q
    |||||||||| |||||| |||||| ||||||| |||| |||| ||   || |||||  | |||||||||||||||||||||||| |||||    
T  36229107 ctcaactggcaaatgccgaaattgcaaggccggacgtcatgatccgggttcgaacccgggacctcacagttgtgtgtgagtttattttca 36229018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 240
Target Start/End: Original strand, 41377587 - 41377640
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatga 240  Q
    |||||||| || |||||||||| ||||||||||||||||||||| |||| ||||    
T  41377587 tagaagtcctagctcaactggcaaatgccaaaattgtaaggccggacgtcatga 41377640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 3113108 - 3113008
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||||| |||||| |||||| ||||||| ||||  | |||| | || |||||  | | |||||||||||||||||||||| |||||||  ||||||    
T  3113108 ctcaactggcaaatgccgaaattgcaaggccggacgtcgtaacccgagttcgaacccgggatctcacagttgtgtgtgagtttattttcagtggattacc 3113009  T
Q  299 a 299  Q
    |    
T  3113008 a 3113008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 10228960 - 10229015
Alignment:
Q  188 agaagtcttaactcaactggc-taatgccaaaattgtaaggccgaacgttatgacc 242  Q
    |||||||||||||||||||||  |||||||||||||| |||||||| || ||||||    
T  10228960 agaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatgacc 10229015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Complemental strand, 475335 - 475294
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||||||||||||||||||||| |||||| ||||||||    
T  475335 gaacctcacagttgtgtgtgagtttaa-ttcagtgaattacca 475294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 244
Target Start/End: Complemental strand, 45686157 - 45686095
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgaccca 244  Q
    |||||||||||||||| ||||||| || |||||| |||||| ||||||| ||||  |||||||    
T  45686157 ttgtttagaagtcttagctcaactagcaaatgccgaaattgaaaggccggacgtcgtgaccca 45686095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 299
Target Start/End: Original strand, 27230744 - 27230781
Alignment:
Q  262 tcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  27230744 tcacagttgtgtgtgaatttaatttcagtgaattacca 27230781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 9349729 - 9349689
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  9349729 acctcacagttgtgtgtgagtttattttcagtggattacca 9349689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 299
Target Start/End: Original strand, 28458725 - 28458777
Alignment:
Q  247 tttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||  |||||||||||||| |||| ||||||| |||| ||||||||||    
T  28458725 tttgaacccagaacctcacagttgcgtgtaagtttaacttcaataaattacca 28458777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 38257358 - 38257326
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcag 289  Q
    |||||||||| ||||||||||||||||||||||    
T  38257358 gaacctcacaattgtgtgtgagtttaatttcag 38257326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 40756780 - 40756748
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagta 291  Q
    |||||||||||| ||||||||||||||||||||    
T  40756780 acctcacagttgcgtgtgagtttaatttcagta 40756748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 41808205 - 41808317
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  |||||||||||||||||||||||||| |||    
T  41808205 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccggaacctcacagttgtgtgtgagtttatttt 41808304  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  41808305 cagtggattacca 41808317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 48660020 - 48660137
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||| || |||||||||| |||||| |||||| ||||||| ||||||||||||   || |||||  | | |||||||||||||||||||||    
T  48660020 ttgtctagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttatgacccgggttcgaacccgggatctcacagttgtgtgtgagttt 48660119  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  48660120 attttcagtggattacca 48660137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 28455877 - 28455989
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||    
T  28455877 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 28455976  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  28455977 cagtggattacca 28455989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 32007077 - 32007189
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  32007077 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 32007176  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  32007177 cagtggattacca 32007189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 7275684 - 7275787
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    ||||| |||||||||||||||| |||| | ||||||||||| || |||||||||| |   || |||||  |||| |||||||||||| ||||||||||||    
T  7275684 tagaaatcttaactcaactggcaaatgtcgaaattgtaaggtcggacgttatgactcggattcgaacccggaacttcacagttgtgtatgagtttaattt 7275783  T
Q  287 cagt 290  Q
    ||||    
T  7275784 cagt 7275787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 299
Target Start/End: Complemental strand, 41761541 - 41761424
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||| ||  ||||||||| |||||| |||||| ||||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||    
T  41761541 ttgtctagaagtcctagttcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccaggacctcacagttgtgtgtgagttt 41761442  T
Q  282 aatttcagtaaattacca 299  Q
    | |||||||  |||||||    
T  41761441 attttcagtggattacca 41761424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 5055913 - 5055801
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||| ||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  5055913 tagaagtcctagctcagctggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 5055814  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  5055813 cagtggattacca 5055801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 3716684 - 3716726
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  3716684 gaacctcacagttgtgtgtgagtttaattttagtaaattacca 3716726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 13109836 - 13109885
Alignment:
Q  250 gaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||| ||||||||||||||||||||||||||||||||||  |||||||    
T  13109836 gaacctagaacctcacagttgtgtgtgagtttaatttcagtggattacca 13109885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 247 - 299
Target Start/End: Complemental strand, 13183241 - 13183189
Alignment:
Q  247 tttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    ||||||||| |||||| |||||||| |||||||||||||||||| ||||||||    
T  13183241 tttgaacctagaaccttacagttgtatgtgagtttaatttcagtgaattacca 13183189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 183 - 295
Target Start/End: Complemental strand, 16770285 - 16770173
Alignment:
Q  183 tgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttta 282  Q
    |||||| |||||||| |||||||||| |||||| ||||||||||| || |||| |||   | | ||  || || | ||||||||||||||||||||||||    
T  16770285 tgtttataagtcttagctcaactggcaaatgccgaaattgtaaggtcggacgtcatggttcgagttcaaatctgggacctcacagttgtgtgtgagttta 16770186  T
Q  283 atttcagtaaatt 295  Q
     ||||||| ||||    
T  16770185 ttttcagtgaatt 16770173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 35945800 - 35945912
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||  |||||| |||||||||||| | ||||| |||||    || |||||  ||||||||||||||||||||| |||| |||    
T  35945800 tagaagtcctagctcaactggtaaatgccgaaattgtaaggctggacgttgtgacctgggttcgaacccggaacctcacagttgtgtgtgaatttatttt 35945899  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  35945900 cagtggattacca 35945912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 39276365 - 39276465
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||||| |||||| |||||| ||||||| ||||| ||||||   || |||||  | ||||||||||| |||||||||||| |||||||  ||||||    
T  39276365 ctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccgggttcgaacccgggacctcacagttatgtgtgagtttattttcagtggattacc 39276464  T
Q  299 a 299  Q
    |    
T  39276465 a 39276465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 289
Target Start/End: Original strand, 192418 - 192520
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||| | ||||| ||||||| ||||||| ||||| ||| ||   || |||||  | |||||||||||||||||||||||| |||    
T  192418 tagaagtcctagctcaactgacaaatgctaaaattgcaaggccggacgttgtgatccgtgttcgaacccaggacctcacagttgtgtgtgagtttatttt 192517  T
Q  287 cag 289  Q
    |||    
T  192518 cag 192520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 778640 - 778690
Alignment:
Q  250 gaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattaccaa 300  Q
    |||||| | |||| ||||||||||||||||||||||||||| |||||||||    
T  778640 gaacctaggacctgacagttgtgtgtgagtttaatttcagtgaattaccaa 778690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 290
Target Start/End: Original strand, 26032792 - 26032907
Alignment:
Q  178 attattgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccga---acgttatgacccaactttgaaccttgaacctcacagttgtgtg 274  Q
    ||||| || |||||||| ||| ||||||| | |||||| ||||||||||| ||    ||||  ||||||   || |||||| ||||||||||||| ||||    
T  26032792 attatcgtctagaagtcctaattcaactgacaaatgccgaaattgtaaggtcggcggacgtcgtgacccgggttcgaacctggaacctcacagttttgtg 26032891  T
Q  275 tgagtttaatttcagt 290  Q
    ||||||||||||||||    
T  26032892 tgagtttaatttcagt 26032907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Complemental strand, 26264590 - 26264560
Alignment:
Q  258 aacctcacagttgtgtgtgagtttaatttca 288  Q
    |||||||||||||||||||||||||||||||    
T  26264590 aacctcacagttgtgtgtgagtttaatttca 26264560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 7059542 - 7059582
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||||||| |||  |||||||    
T  7059542 acctcacagttgtgtgtgagtttaatttaagtggattacca 7059582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 41039356 - 41039316
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  41039356 acctcacagttgtgtgtgagtttattttcagtggattacca 41039316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 45813064 - 45813024
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  45813064 acctcacagttgtgtgtgagtttattttcagtggattacca 45813024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 987 - 875
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| |||| |||||||   || |||||  | |||||||||||||||||||||||| |||    
T  987 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcatgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 888  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  887 cagtggattacca 875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 21018226 - 21018338
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||||||||||  |||||| ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||    
T  21018226 tagaagtcctagctcaactggcaaatgccaaaattgcgaggccggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 21018325  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  21018326 cagtggattacca 21018338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 4825064 - 4824963
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| ||||| |||||||  ||  ||||  | |||||||||||||||||||||||| |||    
T  4825064 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgttgtgacccaggttcaaacccgggacctcacagttgtgtgtgagtttatttt 4824965  T
Q  287 ca 288  Q
    ||    
T  4824964 ca 4824963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 6020995 - 6021107
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| |||||||| |||| |||| |||||||| ||||||  ||||| ||||||   || |||||  | ||||| |||||||||||||||||| |||    
T  6020995 tagaagtcctaactcaattggcaaatgtcaaaattgcaaggcctgacgttgtgacccggattcgaacccgggacctctcagttgtgtgtgagtttatttt 6021094  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  6021095 cagtggattacca 6021107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 13203960 - 13204072
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| ||||||| ||||  ||||||   || |||||  | ||||||||||| |||||||||||| |||    
T  13203960 tagaagtcctagctcaactggcaaatgccgaaattgcaaggccggacgtcgtgacccgggttcgaacccgggacctcacagttatgtgtgagtttatttt 13204059  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  13204060 cagtggattacca 13204072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 35317822 - 35317710
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| |||| || |||||||||||     | |||||  | |||||||||||||||||||||||| |||    
T  35317822 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgttatgacctggggtcgaacccgggacctcacagttgtgtgtgagtttatttt 35317723  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  35317722 cagtggattacca 35317710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 9577086 - 9576985
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||  |||||| ||||||  |||| ||||||    || |||||  ||||||||||||||| ||||||||||||||    
T  9577086 tagaagtcctagctcaactggcaaatgctgaaattgcaaggccagacgtcatgacctgggttcgaacccagaacctcacagttgtatgtgagtttaattt 9576987  T
Q  287 ca 288  Q
    ||    
T  9576986 ca 9576985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 32143527 - 32143471
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgaccc 243  Q
    |||||||| || |||||||||| ||||||||||||| ||||||| ||||| ||||||    
T  32143527 tagaagtcatagctcaactggcaaatgccaaaattgcaaggccggacgttgtgaccc 32143471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 26802337 - 26802392
Alignment:
Q  188 agaagtcttaactcaactggc-taatgccaaaattgtaaggccgaacgttatgacc 242  Q
    |||||||||||||||||||||  |||||||||||||| |||||||| || ||||||    
T  26802337 agaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatgacc 26802392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 26809887 - 26809942
Alignment:
Q  188 agaagtcttaactcaactggc-taatgccaaaattgtaaggccgaacgttatgacc 242  Q
    |||||||||||||||||||||  |||||||||||||| |||||||| || ||||||    
T  26809887 agaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatgacc 26809942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 26824914 - 26824969
Alignment:
Q  188 agaagtcttaactcaactggc-taatgccaaaattgtaaggccgaacgttatgacc 242  Q
    |||||||||||||||||||||  |||||||||||||| |||||||| || ||||||    
T  26824914 agaagtcttaactcaactggcaaaatgccaaaattgttaggccgaatgtcatgacc 26824969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 286
Target Start/End: Complemental strand, 17984797 - 17984768
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaattt 286  Q
    ||||||||||||||||||||||||||||||    
T  17984797 gaacctcacagttgtgtgtgagtttaattt 17984768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 19181784 - 19181817
Alignment:
Q  257 gaacctcacagttgtgtgtgagtttaatttcagt 290  Q
    |||| |||||||||||||||||||||||||||||    
T  19181784 gaacatcacagttgtgtgtgagtttaatttcagt 19181817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 299
Target Start/End: Original strand, 23262610 - 23262659
Alignment:
Q  250 gaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||| |||||| ||||||||||||||||||| |||||||  |||||||    
T  23262610 gaacctagaaccttacagttgtgtgtgagtttattttcagtggattacca 23262659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 27721434 - 27721546
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||  |||||| |||||| || | || ||||  ||||||   ||||||||  | ||||||||||||| ||||| ||||||||    
T  27721434 tagaagtcctagctcaactggaaaatgccgaaattgcaaagtcggacgtcgtgacccgggtttgaacccgggacctcacagttgtatgtgaatttaattt 27721533  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  27721534 cagtggattacca 27721546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 29265950 - 29265990
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  29265950 acctcacagttgtgtgtgagtttattttcagtggattacca 29265990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 31909438 - 31909398
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  31909438 acctcacagttgtgtgtgagtttattttcagtggattacca 31909398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 32143467 - 32143427
Alignment:
Q  259 acctcacagttgtgtgtgagtttaatttcagtaaattacca 299  Q
    |||||||||||||||||||||||| |||||||  |||||||    
T  32143467 acctcacagttgtgtgtgagtttattttcagtggattacca 32143427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 35545931 - 35546035
Alignment:
Q  182 ttgtttagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagttt 281  Q
    |||| |||||||  ||||||||||| | |||||| |||||| ||  ||||||||  ||| || | || |||||| | ||||||||||||| |||| ||||    
T  35545931 ttgtctagaagttctaactcaactgacaaatgccgaaattgcaaaaccgaacgtcgtgatccgaattcgaacctgggacctcacagttgtatgtgggttt 35546030  T
Q  282 aattt 286  Q
    |||||    
T  35546031 aattt 35546035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 299
Target Start/End: Complemental strand, 9056 - 8956
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||||  |||||| |||||||||||| | |||||||||  |   || |||||| | |||||||||||||||||||||||||||||||| | |||||    
T  9056 ctcaactggtaaatgccgaaattgtaaggcgggacgttatgattcgggttcgaacctaggacctcacagttgtgtgtgagtttaatttcagtgatttacc 8957  T
Q  299 a 299  Q
    |    
T  8956 a 8956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 187 - 299
Target Start/End: Original strand, 56484 - 56596
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||| |||| || ||||| ||||||   || |||||  | |||||||||||||||||||||||| |||    
T  56484 tagaagtcctagctcaactggcaaatgccgaaattgcaaggtcggacgttgtgacccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 56583  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  56584 cagtggattacca 56596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 114255 - 114358
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| |||||| |||||||||||||| |||| |||| ||   || |||||  | |||||||| ||||||||||||||| |||    
T  114255 tagaagtcctagctcaactggcaaatgccgaaattgtaaggccggacgtcatgatccgggttcgaacccgggacctcacaattgtgtgtgagtttagttt 114354  T
Q  287 cagt 290  Q
    ||||    
T  114355 cagt 114358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 14076 - 13964
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| ||| || |||||| ||||||| ||||| ||| ||   || |||||  | |||||||||||||||||||||||| |||    
T  14076 tagaagtcctagctcaactggcaaataccgaaattgcaaggccggacgttgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 13977  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  13976 cagtggattacca 13964  T

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Target: scaffold0119; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 299
Target Start/End: Complemental strand, 19756 - 19644
Alignment:
Q  187 tagaagtcttaactcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaattt 286  Q
    |||||||| || |||||||||| ||| || |||||| ||||||| ||||| ||| ||   || |||||  | |||||||||||||||||||||||| |||    
T  19756 tagaagtcctagctcaactggcaaataccgaaattgcaaggccggacgttgtgatccgggttcgaacccgggacctcacagttgtgtgtgagtttatttt 19657  T
Q  287 cagtaaattacca 299  Q
    ||||  |||||||    
T  19656 cagtggattacca 19644  T

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Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 299
Target Start/End: Original strand, 22178 - 22278
Alignment:
Q  199 ctcaactggctaatgccaaaattgtaaggccgaacgttatgacccaactttgaaccttgaacctcacagttgtgtgtgagtttaatttcagtaaattacc 298  Q
    |||||||| | |||||| |||||||||||||| ||||  ||||||   || || ||  | |||||||||||| |||||||||||||||||||  ||||||    
T  22178 ctcaactgacaaatgccgaaattgtaaggccggacgtcgtgacccgggttcgagcccgggacctcacagttgcgtgtgagtttaatttcagtggattacc 22277  T
Q  299 a 299  Q
    |    
T  22278 a 22278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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