View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5020-Insertion-17 (Length: 364)
Name: NF5020-Insertion-17
Description: NF5020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5020-Insertion-17 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 267 - 364
Target Start/End: Complemental strand, 6031513 - 6031416
Alignment:
| Q |
267 |
tgtgttatatctcacaagccttgtcgtactgcacgattaagtcggccaaacttataatattgttaaacaatgaatccttattgaatatagaactcttg |
364 |
Q |
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| T |
6031513 |
tgtgttatatctcacaagccttgtcgtactgcacgattaagtcggtcaaatttataatattgttaaacaatgaatccttattgaatatagaactcttg |
6031416 |
T |
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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 6033710 - 6033628
Alignment:
| Q |
69 |
ggtataacgataaaaacaccaataacgaccaaatgccatggtagcttttgaggaga----ttagagaccgactctaatagtgta |
148 |
Q |
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| T |
6033710 |
ggtataatgataaaaacaccaa-aaggaccaaatgtcatggtaactttcgaggagggtgcttagagaccgactctaaaagtgta |
6033628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 6031336 - 6031388
Alignment:
| Q |
218 |
catgcaattcaaattgcacgtggacttgaagcatttgattgaattaaaatgtg |
270 |
Q |
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| T |
6031336 |
catgcaattcaactggcatgtggatgtgaaacatttgattgaattaaaatgtg |
6031388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 239 - 267
Target Start/End: Complemental strand, 6033180 - 6033152
Alignment:
| Q |
239 |
ggacttgaagcatttgattgaattaaaat |
267 |
Q |
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| T |
6033180 |
ggacttgaagcatttgattgaattaaaat |
6033152 |
T |
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